2024-07-27 03:17:15,780 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 03:17:16,136 Running on GPU
2024-07-27 03:17:19,860 Found 6 citations for tools or databases
2024-07-27 03:17:19,861 Query 1/1: NEIL3_KCTD1 (length 863)
2024-07-27 03:17:20,329 Sleeping for 8s. Reason: PENDING
2024-07-27 03:17:28,760 Sleeping for 8s. Reason: RUNNING
2024-07-27 03:17:37,211 Sleeping for 5s. Reason: RUNNING
2024-07-27 03:17:42,650 Sleeping for 9s. Reason: RUNNING
2024-07-27 03:17:52,109 Sleeping for 10s. Reason: RUNNING
2024-07-27 03:18:02,561 Sleeping for 10s. Reason: RUNNING
2024-07-27 03:18:12,971 Sleeping for 7s. Reason: RUNNING
2024-07-27 03:18:20,387 Sleeping for 7s. Reason: RUNNING
2024-07-27 03:18:27,812 Sleeping for 9s. Reason: RUNNING
2024-07-27 03:18:37,232 Sleeping for 10s. Reason: RUNNING
2024-07-27 03:18:49,313 Sleeping for 5s. Reason: PENDING
2024-07-27 03:18:54,752 Sleeping for 6s. Reason: RUNNING
2024-07-27 03:19:01,153 Sleeping for 8s. Reason: RUNNING
2024-07-27 03:19:09,563 Sleeping for 10s. Reason: RUNNING
2024-07-27 03:19:19,975 Sleeping for 10s. Reason: RUNNING
2024-07-27 03:19:33,529 Setting max_seq=508, max_extra_seq=2048
2024-07-27 03:23:30,323 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58.8 pTM=0.395 ipTM=0.161
2024-07-27 03:23:49,189 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=60.1 pTM=0.397 ipTM=0.162 tol=8.33
2024-07-27 03:24:08,077 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.7 pTM=0.399 ipTM=0.163 tol=8.22
2024-07-27 03:24:26,965 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=60.5 pTM=0.397 ipTM=0.165 tol=4.89
2024-07-27 03:24:45,874 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.2 pTM=0.4 ipTM=0.171 tol=2.79
2024-07-27 03:25:04,795 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=60.4 pTM=0.399 ipTM=0.17 tol=3.2
2024-07-27 03:25:23,773 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=60.7 pTM=0.398 ipTM=0.171 tol=2.21
2024-07-27 03:25:42,771 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=60.4 pTM=0.399 ipTM=0.169 tol=3.47
2024-07-27 03:26:01,774 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=60.4 pTM=0.401 ipTM=0.172 tol=3.32
2024-07-27 03:26:20,770 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.4 pTM=0.399 ipTM=0.167 tol=3.15
2024-07-27 03:26:39,756 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=60.4 pTM=0.4 ipTM=0.174 tol=2.91
2024-07-27 03:26:58,759 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=60.6 pTM=0.401 ipTM=0.174 tol=3.21
2024-07-27 03:27:17,757 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=60.5 pTM=0.399 ipTM=0.171 tol=1.25
2024-07-27 03:27:36,741 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=60.2 pTM=0.398 ipTM=0.167 tol=2.12
2024-07-27 03:27:55,745 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=60.5 pTM=0.401 ipTM=0.161 tol=3.3
2024-07-27 03:28:14,735 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=60.4 pTM=0.405 ipTM=0.154 tol=2.47
2024-07-27 03:28:33,720 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60.7 pTM=0.412 ipTM=0.155 tol=3.12
2024-07-27 03:28:52,714 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=60.7 pTM=0.409 ipTM=0.164 tol=3.01
2024-07-27 03:29:11,717 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=60.7 pTM=0.412 ipTM=0.169 tol=3.15
2024-07-27 03:29:30,705 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=61 pTM=0.414 ipTM=0.174 tol=2.33
2024-07-27 03:29:49,680 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=61 pTM=0.415 ipTM=0.171 tol=2.71
2024-07-27 03:30:08,645 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61 pTM=0.412 ipTM=0.18 tol=1.86
2024-07-27 03:30:27,632 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=61.2 pTM=0.414 ipTM=0.185 tol=1.93
2024-07-27 03:30:46,621 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=60.9 pTM=0.413 ipTM=0.184 tol=2.77
2024-07-27 03:31:05,599 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.9 pTM=0.411 ipTM=0.182 tol=2.08
2024-07-27 03:31:24,591 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=61 pTM=0.411 ipTM=0.185 tol=1.35
2024-07-27 03:31:43,571 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.9 pTM=0.412 ipTM=0.184 tol=1.62
2024-07-27 03:32:02,553 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=60.8 pTM=0.413 ipTM=0.187 tol=1.87
2024-07-27 03:32:21,531 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=60.8 pTM=0.412 ipTM=0.183 tol=2.22
2024-07-27 03:32:40,534 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=61.1 pTM=0.411 ipTM=0.185 tol=2.67
2024-07-27 03:32:59,528 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=61 pTM=0.412 ipTM=0.184 tol=2.48
2024-07-27 03:32:59,529 alphafold2_multimer_v3_model_1_seed_000 took 800.5s (30 recycles)
2024-07-27 03:33:19,167 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=60.7 pTM=0.398 ipTM=0.154
2024-07-27 03:33:38,226 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=62.1 pTM=0.426 ipTM=0.16 tol=9.41
2024-07-27 03:33:57,291 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=61.6 pTM=0.413 ipTM=0.162 tol=6.48
2024-07-27 03:34:16,340 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=62.5 pTM=0.421 ipTM=0.151 tol=6.74
2024-07-27 03:34:35,412 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=61.9 pTM=0.418 ipTM=0.153 tol=5.57
2024-07-27 03:34:54,457 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62.2 pTM=0.42 ipTM=0.156 tol=3.79
2024-07-27 03:35:13,520 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=62.7 pTM=0.42 ipTM=0.152 tol=2.46
2024-07-27 03:35:32,593 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=62.7 pTM=0.421 ipTM=0.154 tol=3.21
2024-07-27 03:35:51,682 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=62.9 pTM=0.421 ipTM=0.151 tol=2.62
2024-07-27 03:36:10,760 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=62.8 pTM=0.418 ipTM=0.146 tol=1.98
2024-07-27 03:36:29,840 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=63.1 pTM=0.417 ipTM=0.144 tol=2.75
2024-07-27 03:36:48,932 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.1 pTM=0.418 ipTM=0.142 tol=2.73
2024-07-27 03:37:08,026 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=62.9 pTM=0.417 ipTM=0.145 tol=4.76
2024-07-27 03:37:27,101 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=62.9 pTM=0.418 ipTM=0.144 tol=4.88
2024-07-27 03:37:46,201 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.2 pTM=0.416 ipTM=0.146 tol=3.5
2024-07-27 03:38:05,300 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=62.9 pTM=0.415 ipTM=0.147 tol=3.58
2024-07-27 03:38:24,413 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=62.9 pTM=0.417 ipTM=0.149 tol=4.29
2024-07-27 03:38:43,540 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63.1 pTM=0.416 ipTM=0.149 tol=5.06
2024-07-27 03:39:02,653 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=63.1 pTM=0.416 ipTM=0.15 tol=3.15
2024-07-27 03:39:21,774 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.2 pTM=0.417 ipTM=0.151 tol=1.75
2024-07-27 03:39:40,895 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63.6 pTM=0.421 ipTM=0.15 tol=2.95
2024-07-27 03:39:59,989 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=63.1 pTM=0.417 ipTM=0.147 tol=1.81
2024-07-27 03:40:19,058 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=63.2 pTM=0.418 ipTM=0.149 tol=1.6
2024-07-27 03:40:38,142 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63 pTM=0.418 ipTM=0.15 tol=1.28
2024-07-27 03:40:57,225 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=63 pTM=0.415 ipTM=0.148 tol=1.18
2024-07-27 03:41:16,314 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=63.2 pTM=0.418 ipTM=0.15 tol=1.41
2024-07-27 03:41:35,404 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=62.9 pTM=0.416 ipTM=0.151 tol=1.02
2024-07-27 03:41:54,473 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=63.2 pTM=0.418 ipTM=0.149 tol=2.69
2024-07-27 03:42:13,562 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63 pTM=0.418 ipTM=0.151 tol=3.04
2024-07-27 03:42:32,639 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.1 pTM=0.418 ipTM=0.153 tol=2.01
2024-07-27 03:42:51,710 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63.2 pTM=0.419 ipTM=0.148 tol=1.76
2024-07-27 03:42:51,711 alphafold2_multimer_v3_model_2_seed_000 took 591.6s (30 recycles)
2024-07-27 03:43:11,393 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=60.5 pTM=0.402 ipTM=0.164
2024-07-27 03:43:30,505 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=60.8 pTM=0.392 ipTM=0.139 tol=10.3
2024-07-27 03:43:49,574 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=61.5 pTM=0.397 ipTM=0.15 tol=8.59
2024-07-27 03:44:08,646 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=61.3 pTM=0.397 ipTM=0.151 tol=2.87
2024-07-27 03:44:27,713 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=61.2 pTM=0.398 ipTM=0.154 tol=3.26
2024-07-27 03:44:46,778 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=61.1 pTM=0.398 ipTM=0.158 tol=1.8
2024-07-27 03:45:05,861 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=61.5 pTM=0.399 ipTM=0.158 tol=1.58
2024-07-27 03:45:24,933 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=61.2 pTM=0.398 ipTM=0.154 tol=1.72
2024-07-27 03:45:43,992 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=61.3 pTM=0.399 ipTM=0.162 tol=1.27
2024-07-27 03:46:03,046 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=60.9 pTM=0.4 ipTM=0.161 tol=1.33
2024-07-27 03:46:22,091 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.5 pTM=0.406 ipTM=0.159 tol=4.74
2024-07-27 03:46:41,128 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60.6 pTM=0.414 ipTM=0.151 tol=3.41
2024-07-27 03:47:00,161 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.6 pTM=0.413 ipTM=0.148 tol=2.48
2024-07-27 03:47:19,215 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.8 pTM=0.417 ipTM=0.148 tol=2.39
2024-07-27 03:47:38,249 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61 pTM=0.417 ipTM=0.15 tol=2.47
2024-07-27 03:47:57,279 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=60.8 pTM=0.414 ipTM=0.152 tol=1.66
2024-07-27 03:48:16,316 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=60.8 pTM=0.414 ipTM=0.154 tol=1.79
2024-07-27 03:48:35,346 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=60.7 pTM=0.417 ipTM=0.158 tol=2.05
2024-07-27 03:48:54,376 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=60.8 pTM=0.422 ipTM=0.161 tol=2.3
2024-07-27 03:49:13,439 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=61.2 pTM=0.424 ipTM=0.161 tol=1.58
2024-07-27 03:49:32,490 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=61.2 pTM=0.425 ipTM=0.164 tol=1.79
2024-07-27 03:49:51,504 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=60.9 pTM=0.42 ipTM=0.163 tol=1.43
2024-07-27 03:50:10,550 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=60.8 pTM=0.418 ipTM=0.164 tol=1.49
2024-07-27 03:50:29,596 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61 pTM=0.42 ipTM=0.167 tol=1.41
2024-07-27 03:50:48,623 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=61 pTM=0.422 ipTM=0.167 tol=1.15
2024-07-27 03:51:07,658 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=61 pTM=0.419 ipTM=0.168 tol=1.56
2024-07-27 03:51:26,690 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=60.9 pTM=0.421 ipTM=0.168 tol=1.33
2024-07-27 03:51:45,715 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.7 pTM=0.419 ipTM=0.164 tol=1.44
2024-07-27 03:52:04,726 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=60.7 pTM=0.42 ipTM=0.169 tol=1.97
2024-07-27 03:52:23,758 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=60.8 pTM=0.418 ipTM=0.171 tol=1.14
2024-07-27 03:52:42,790 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=61.2 pTM=0.419 ipTM=0.169 tol=1.49
2024-07-27 03:52:42,791 alphafold2_multimer_v3_model_3_seed_000 took 590.5s (30 recycles)
2024-07-27 03:53:02,419 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=59.4 pTM=0.414 ipTM=0.18
2024-07-27 03:53:21,430 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=60.4 pTM=0.411 ipTM=0.176 tol=16.6
2024-07-27 03:53:40,453 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.9 pTM=0.413 ipTM=0.173 tol=5.25
2024-07-27 03:53:59,477 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=60.6 pTM=0.419 ipTM=0.185 tol=4.91
2024-07-27 03:54:18,492 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=60.1 pTM=0.413 ipTM=0.175 tol=5.16
2024-07-27 03:54:37,527 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=60.2 pTM=0.418 ipTM=0.19 tol=3.17
2024-07-27 03:54:56,556 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=60.6 pTM=0.413 ipTM=0.177 tol=2.15
2024-07-27 03:55:15,606 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=60.4 pTM=0.419 ipTM=0.187 tol=1.71
2024-07-27 03:55:34,622 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=60.1 pTM=0.416 ipTM=0.183 tol=3.73
2024-07-27 03:55:53,639 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=60 pTM=0.418 ipTM=0.187 tol=4.2
2024-07-27 03:56:12,664 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=60 pTM=0.416 ipTM=0.183 tol=3.01
2024-07-27 03:56:31,688 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=60.2 pTM=0.419 ipTM=0.188 tol=1.95
2024-07-27 03:56:50,703 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=59.9 pTM=0.414 ipTM=0.18 tol=3.88
2024-07-27 03:57:09,732 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=60.1 pTM=0.418 ipTM=0.188 tol=3.8
2024-07-27 03:57:28,760 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=60.2 pTM=0.412 ipTM=0.177 tol=2.56
2024-07-27 03:57:47,795 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=60.3 pTM=0.415 ipTM=0.185 tol=2.08
2024-07-27 03:58:06,817 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=59.8 pTM=0.415 ipTM=0.183 tol=8.52
2024-07-27 03:58:25,833 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=60 pTM=0.418 ipTM=0.19 tol=7.29
2024-07-27 03:58:44,866 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=59.9 pTM=0.414 ipTM=0.184 tol=4.12
2024-07-27 03:59:03,880 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=60.6 pTM=0.42 ipTM=0.187 tol=2.11
2024-07-27 03:59:22,905 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=60.7 pTM=0.417 ipTM=0.18 tol=2.07
2024-07-27 03:59:41,921 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=60.1 pTM=0.418 ipTM=0.188 tol=1.83
2024-07-27 04:00:00,944 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=60.1 pTM=0.413 ipTM=0.18 tol=1.12
2024-07-27 04:00:19,953 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=60.2 pTM=0.421 ipTM=0.191 tol=2.11
2024-07-27 04:00:38,965 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=59.7 pTM=0.412 ipTM=0.177 tol=3.59
2024-07-27 04:00:57,985 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=60.3 pTM=0.415 ipTM=0.187 tol=2.49
2024-07-27 04:01:16,983 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=60.1 pTM=0.413 ipTM=0.179 tol=7.35
2024-07-27 04:01:35,997 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=59.8 pTM=0.414 ipTM=0.182 tol=7.44
2024-07-27 04:01:55,012 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=59.9 pTM=0.414 ipTM=0.18 tol=1.28
2024-07-27 04:02:14,031 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.1 pTM=0.417 ipTM=0.187 tol=1.38
2024-07-27 04:02:33,045 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=60.1 pTM=0.413 ipTM=0.18 tol=1.76
2024-07-27 04:02:33,046 alphafold2_multimer_v3_model_4_seed_000 took 589.7s (30 recycles)
2024-07-27 04:02:52,690 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=59.5 pTM=0.398 ipTM=0.228
2024-07-27 04:03:11,771 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=60.8 pTM=0.395 ipTM=0.154 tol=13.7
2024-07-27 04:03:30,886 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=62 pTM=0.395 ipTM=0.156 tol=8.78
2024-07-27 04:03:49,985 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=61.6 pTM=0.398 ipTM=0.165 tol=5.98
2024-07-27 04:04:09,082 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=61.8 pTM=0.397 ipTM=0.155 tol=4.64
2024-07-27 04:04:28,172 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61.5 pTM=0.395 ipTM=0.152 tol=5.38
2024-07-27 04:04:47,285 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=62.1 pTM=0.396 ipTM=0.153 tol=2.54
2024-07-27 04:05:06,387 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=61.6 pTM=0.395 ipTM=0.156 tol=2.97
2024-07-27 04:05:25,495 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=61.6 pTM=0.396 ipTM=0.154 tol=5.52
2024-07-27 04:05:44,612 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.3 pTM=0.395 ipTM=0.153 tol=6.77
2024-07-27 04:06:03,728 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=61.3 pTM=0.396 ipTM=0.153 tol=4.6
2024-07-27 04:06:22,841 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=61.4 pTM=0.396 ipTM=0.153 tol=4.89
2024-07-27 04:06:41,942 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=61.5 pTM=0.395 ipTM=0.152 tol=3.45
2024-07-27 04:07:01,055 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=61.6 pTM=0.395 ipTM=0.151 tol=5.05
2024-07-27 04:07:20,182 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=61.8 pTM=0.394 ipTM=0.152 tol=6.43
2024-07-27 04:07:39,303 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=61.5 pTM=0.393 ipTM=0.149 tol=4.48
2024-07-27 04:07:58,428 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=61.4 pTM=0.394 ipTM=0.153 tol=5.12
2024-07-27 04:08:17,547 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=61.4 pTM=0.394 ipTM=0.151 tol=7.14
2024-07-27 04:08:36,667 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=61.4 pTM=0.394 ipTM=0.151 tol=4.69
2024-07-27 04:08:55,798 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61.6 pTM=0.394 ipTM=0.15 tol=4.13
2024-07-27 04:09:14,925 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=61.6 pTM=0.394 ipTM=0.15 tol=8.2
2024-07-27 04:09:34,050 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=61.4 pTM=0.394 ipTM=0.15 tol=2.3
2024-07-27 04:09:53,169 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=61.3 pTM=0.394 ipTM=0.152 tol=6.81
2024-07-27 04:10:12,298 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=61.4 pTM=0.395 ipTM=0.151 tol=7.66
2024-07-27 04:10:31,421 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.4 pTM=0.394 ipTM=0.152 tol=2.45
2024-07-27 04:10:50,518 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=61.4 pTM=0.394 ipTM=0.152 tol=7.1
2024-07-27 04:11:09,612 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=61.4 pTM=0.394 ipTM=0.152 tol=7.1
2024-07-27 04:11:28,705 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=61.2 pTM=0.395 ipTM=0.153 tol=2.99
2024-07-27 04:11:47,823 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=61.3 pTM=0.394 ipTM=0.153 tol=6.01
2024-07-27 04:12:06,936 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=61.1 pTM=0.394 ipTM=0.156 tol=7.4
2024-07-27 04:12:26,068 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=61.5 pTM=0.395 ipTM=0.155 tol=3.91
2024-07-27 04:12:26,069 alphafold2_multimer_v3_model_5_seed_000 took 592.4s (30 recycles)
2024-07-27 04:12:26,670 reranking models by 'multimer' metric
2024-07-27 04:12:29,848 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 04:14:38,156 Relaxation took 131.5s
2024-07-27 04:14:38,156 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=61 pTM=0.412 ipTM=0.184
2024-07-27 04:16:10,181 Relaxation took 92.0s
2024-07-27 04:16:10,182 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=60.1 pTM=0.413 ipTM=0.18
2024-07-27 04:17:41,582 Relaxation took 91.4s
2024-07-27 04:17:41,583 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=61.2 pTM=0.419 ipTM=0.169
2024-07-27 04:29:51,016 Relaxation took 729.4s
2024-07-27 04:29:51,016 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=61.5 pTM=0.395 ipTM=0.155
2024-07-27 04:31:20,650 Relaxation took 89.6s
2024-07-27 04:31:20,650 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63.2 pTM=0.419 ipTM=0.148
2024-07-27 04:31:22,554 Done