2024-07-27 05:21:28,259 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 05:21:28,589 Running on GPU
2024-07-27 05:21:32,726 Found 6 citations for tools or databases
2024-07-27 05:21:32,727 Query 1/1: PARS2_FBXO22 (length 878)
2024-07-27 05:21:33,175 Sleeping for 6s. Reason: PENDING
2024-07-27 05:21:39,586 Sleeping for 6s. Reason: RUNNING
2024-07-27 05:21:46,019 Sleeping for 6s. Reason: RUNNING
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2024-07-27 05:22:16,723 Sleeping for 8s. Reason: RUNNING
2024-07-27 05:22:25,134 Sleeping for 9s. Reason: RUNNING
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2024-07-27 05:22:51,408 Sleeping for 9s. Reason: RUNNING
2024-07-27 05:23:00,833 Sleeping for 7s. Reason: RUNNING
2024-07-27 05:23:08,262 Sleeping for 6s. Reason: RUNNING
2024-07-27 05:23:14,691 Sleeping for 5s. Reason: RUNNING
2024-07-27 05:23:21,955 Sleeping for 7s. Reason: PENDING
2024-07-27 05:23:29,391 Sleeping for 6s. Reason: RUNNING
2024-07-27 05:23:35,824 Sleeping for 9s. Reason: RUNNING
2024-07-27 05:23:45,241 Sleeping for 8s. Reason: RUNNING
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2024-07-27 05:24:03,076 Sleeping for 6s. Reason: RUNNING
2024-07-27 05:24:09,505 Sleeping for 8s. Reason: RUNNING
2024-07-27 05:24:17,952 Sleeping for 9s. Reason: RUNNING
2024-07-27 05:24:30,150 Setting max_seq=508, max_extra_seq=2048
2024-07-27 05:27:38,174 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79 pTM=0.55 ipTM=0.165
2024-07-27 05:27:54,154 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=82.6 pTM=0.748 ipTM=0.595 tol=6.26
2024-07-27 05:28:10,165 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.7 pTM=0.788 ipTM=0.69 tol=1.5
2024-07-27 05:28:26,237 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.8 pTM=0.78 ipTM=0.677 tol=0.982
2024-07-27 05:28:42,329 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.9 pTM=0.783 ipTM=0.682 tol=0.778
2024-07-27 05:28:58,443 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.2 pTM=0.782 ipTM=0.681 tol=3.21
2024-07-27 05:29:14,532 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.5 pTM=0.755 ipTM=0.628 tol=3.38
2024-07-27 05:29:30,670 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.8 pTM=0.772 ipTM=0.659 tol=0.846
2024-07-27 05:29:46,775 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83.8 pTM=0.774 ipTM=0.666 tol=0.592
2024-07-27 05:30:02,896 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83.9 pTM=0.775 ipTM=0.669 tol=0.548
2024-07-27 05:30:19,034 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83.8 pTM=0.772 ipTM=0.665 tol=0.43
2024-07-27 05:30:19,035 alphafold2_multimer_v3_model_1_seed_000 took 343.8s (10 recycles)
2024-07-27 05:30:35,634 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80.2 pTM=0.581 ipTM=0.244
2024-07-27 05:30:51,810 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.6 pTM=0.819 ipTM=0.772 tol=3.73
2024-07-27 05:31:08,002 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.3 pTM=0.817 ipTM=0.757 tol=1.02
2024-07-27 05:31:24,157 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.5 pTM=0.818 ipTM=0.753 tol=1.26
2024-07-27 05:31:40,311 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.4 pTM=0.815 ipTM=0.746 tol=1.07
2024-07-27 05:31:56,482 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.5 pTM=0.814 ipTM=0.745 tol=0.506
2024-07-27 05:32:12,648 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.4 pTM=0.81 ipTM=0.735 tol=0.389
2024-07-27 05:32:12,649 alphafold2_multimer_v3_model_2_seed_000 took 113.1s (6 recycles)
2024-07-27 05:32:29,239 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.1 pTM=0.644 ipTM=0.388
2024-07-27 05:32:45,405 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=82.3 pTM=0.759 ipTM=0.637 tol=2.61
2024-07-27 05:33:01,573 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=82.6 pTM=0.76 ipTM=0.648 tol=1.97
2024-07-27 05:33:17,741 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=82.8 pTM=0.759 ipTM=0.646 tol=1.11
2024-07-27 05:33:33,926 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.8 pTM=0.759 ipTM=0.645 tol=2.27
2024-07-27 05:33:50,102 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83 pTM=0.766 ipTM=0.655 tol=1.02
2024-07-27 05:34:06,276 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=82.8 pTM=0.751 ipTM=0.628 tol=0.702
2024-07-27 05:34:22,477 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=82.8 pTM=0.754 ipTM=0.632 tol=1.17
2024-07-27 05:34:38,665 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=82.7 pTM=0.751 ipTM=0.626 tol=1.11
2024-07-27 05:34:54,852 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=82.9 pTM=0.755 ipTM=0.633 tol=1.32
2024-07-27 05:35:11,038 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=82.9 pTM=0.749 ipTM=0.611 tol=1.62
2024-07-27 05:35:27,213 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=82.7 pTM=0.739 ipTM=0.594 tol=1.36
2024-07-27 05:35:43,370 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=82.4 pTM=0.739 ipTM=0.592 tol=1.47
2024-07-27 05:35:59,540 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=82.4 pTM=0.733 ipTM=0.585 tol=1.32
2024-07-27 05:36:15,706 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=82.3 pTM=0.739 ipTM=0.595 tol=0.58
2024-07-27 05:36:31,874 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=82.4 pTM=0.74 ipTM=0.597 tol=1.07
2024-07-27 05:36:48,025 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=82.6 pTM=0.736 ipTM=0.59 tol=1.6
2024-07-27 05:37:04,179 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=82.5 pTM=0.747 ipTM=0.614 tol=0.894
2024-07-27 05:37:20,343 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=82.4 pTM=0.746 ipTM=0.608 tol=0.885
2024-07-27 05:37:36,494 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=82.5 pTM=0.748 ipTM=0.615 tol=1.05
2024-07-27 05:37:52,659 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=82.4 pTM=0.744 ipTM=0.609 tol=0.513
2024-07-27 05:38:08,804 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=82.5 pTM=0.737 ipTM=0.596 tol=0.859
2024-07-27 05:38:24,953 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=82.4 pTM=0.749 ipTM=0.621 tol=0.569
2024-07-27 05:38:41,123 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=82.6 pTM=0.748 ipTM=0.617 tol=0.714
2024-07-27 05:38:57,297 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=82.4 pTM=0.743 ipTM=0.607 tol=1.08
2024-07-27 05:39:13,436 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=82.5 pTM=0.744 ipTM=0.604 tol=0.864
2024-07-27 05:39:29,601 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=82.4 pTM=0.741 ipTM=0.602 tol=0.71
2024-07-27 05:39:45,759 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=82.3 pTM=0.741 ipTM=0.602 tol=0.75
2024-07-27 05:40:01,923 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=82.3 pTM=0.74 ipTM=0.602 tol=0.538
2024-07-27 05:40:18,070 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=82.4 pTM=0.739 ipTM=0.597 tol=1.23
2024-07-27 05:40:34,232 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=82.4 pTM=0.747 ipTM=0.613 tol=0.687
2024-07-27 05:40:34,233 alphafold2_multimer_v3_model_3_seed_000 took 501.1s (30 recycles)
2024-07-27 05:40:50,872 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.8 pTM=0.554 ipTM=0.178
2024-07-27 05:41:07,079 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.7 pTM=0.549 ipTM=0.171 tol=6.04
2024-07-27 05:41:23,270 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80 pTM=0.558 ipTM=0.191 tol=4.41
2024-07-27 05:41:39,434 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.7 pTM=0.567 ipTM=0.196 tol=4.7
2024-07-27 05:41:55,601 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.5 pTM=0.578 ipTM=0.235 tol=2.92
2024-07-27 05:42:11,762 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.9 pTM=0.577 ipTM=0.216 tol=3.53
2024-07-27 05:42:27,912 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.5 pTM=0.577 ipTM=0.229 tol=2.22
2024-07-27 05:42:44,081 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.2 pTM=0.57 ipTM=0.203 tol=1.21
2024-07-27 05:43:00,238 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.4 pTM=0.576 ipTM=0.226 tol=1.27
2024-07-27 05:43:16,407 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.5 pTM=0.572 ipTM=0.207 tol=1.08
2024-07-27 05:43:32,593 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.4 pTM=0.575 ipTM=0.224 tol=1.63
2024-07-27 05:43:48,772 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80.5 pTM=0.578 ipTM=0.222 tol=1.65
2024-07-27 05:44:04,935 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80.2 pTM=0.574 ipTM=0.22 tol=0.849
2024-07-27 05:44:21,094 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.2 pTM=0.576 ipTM=0.218 tol=1.51
2024-07-27 05:44:37,262 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80.3 pTM=0.574 ipTM=0.216 tol=0.947
2024-07-27 05:44:53,432 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80.1 pTM=0.572 ipTM=0.214 tol=0.69
2024-07-27 05:45:09,603 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.1 pTM=0.571 ipTM=0.21 tol=0.54
2024-07-27 05:45:25,769 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.1 pTM=0.571 ipTM=0.215 tol=0.337
2024-07-27 05:45:25,770 alphafold2_multimer_v3_model_4_seed_000 took 291.1s (17 recycles)
2024-07-27 05:45:42,371 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.7 pTM=0.561 ipTM=0.203
2024-07-27 05:45:58,544 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.3 pTM=0.547 ipTM=0.178 tol=6.5
2024-07-27 05:46:14,710 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.9 pTM=0.547 ipTM=0.175 tol=1.75
2024-07-27 05:46:30,878 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.2 pTM=0.553 ipTM=0.183 tol=1.48
2024-07-27 05:46:47,042 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.4 pTM=0.552 ipTM=0.178 tol=1.65
2024-07-27 05:47:03,197 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.4 pTM=0.557 ipTM=0.188 tol=0.956
2024-07-27 05:47:19,366 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.4 pTM=0.556 ipTM=0.183 tol=0.663
2024-07-27 05:47:35,538 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.4 pTM=0.55 ipTM=0.176 tol=0.903
2024-07-27 05:47:51,704 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.3 pTM=0.557 ipTM=0.184 tol=0.668
2024-07-27 05:48:07,875 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.4 pTM=0.552 ipTM=0.176 tol=0.882
2024-07-27 05:48:24,056 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.2 pTM=0.556 ipTM=0.181 tol=1.27
2024-07-27 05:48:40,227 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.4 pTM=0.554 ipTM=0.179 tol=1.23
2024-07-27 05:48:56,396 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.1 pTM=0.556 ipTM=0.183 tol=0.91
2024-07-27 05:49:12,562 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80.2 pTM=0.556 ipTM=0.186 tol=1.11
2024-07-27 05:49:28,730 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.1 pTM=0.557 ipTM=0.184 tol=1.32
2024-07-27 05:49:44,904 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.2 pTM=0.551 ipTM=0.175 tol=1.88
2024-07-27 05:50:01,072 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=80.1 pTM=0.554 ipTM=0.18 tol=1.1
2024-07-27 05:50:17,241 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80.2 pTM=0.554 ipTM=0.179 tol=0.711
2024-07-27 05:50:33,400 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=80.1 pTM=0.555 ipTM=0.179 tol=1.37
2024-07-27 05:50:49,558 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=80.1 pTM=0.552 ipTM=0.178 tol=1.15
2024-07-27 05:51:05,730 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80.1 pTM=0.558 ipTM=0.186 tol=0.995
2024-07-27 05:51:21,897 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80 pTM=0.554 ipTM=0.181 tol=0.748
2024-07-27 05:51:38,066 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.9 pTM=0.553 ipTM=0.179 tol=0.895
2024-07-27 05:51:54,245 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=80 pTM=0.558 ipTM=0.185 tol=0.7
2024-07-27 05:52:10,416 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=80 pTM=0.556 ipTM=0.184 tol=0.59
2024-07-27 05:52:26,574 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.8 pTM=0.558 ipTM=0.188 tol=1.11
2024-07-27 05:52:42,734 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=79.9 pTM=0.556 ipTM=0.183 tol=0.889
2024-07-27 05:52:58,904 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.8 pTM=0.559 ipTM=0.187 tol=0.777
2024-07-27 05:53:15,055 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.8 pTM=0.556 ipTM=0.185 tol=0.798
2024-07-27 05:53:31,208 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.9 pTM=0.558 ipTM=0.186 tol=0.672
2024-07-27 05:53:47,382 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=80 pTM=0.557 ipTM=0.183 tol=0.797
2024-07-27 05:53:47,382 alphafold2_multimer_v3_model_5_seed_000 took 501.1s (30 recycles)
2024-07-27 05:53:47,861 reranking models by 'multimer' metric
2024-07-27 05:53:51,012 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 05:54:20,561 Relaxation took 32.7s
2024-07-27 05:54:20,561 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.4 pTM=0.81 ipTM=0.735
2024-07-27 05:55:02,052 Relaxation took 41.5s
2024-07-27 05:55:02,052 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.8 pTM=0.772 ipTM=0.665
2024-07-27 05:56:10,275 Relaxation took 68.2s
2024-07-27 05:56:10,275 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.4 pTM=0.747 ipTM=0.613
2024-07-27 05:57:07,836 Relaxation took 57.6s
2024-07-27 05:57:07,836 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.1 pTM=0.571 ipTM=0.215
2024-07-27 05:57:34,347 Relaxation took 26.5s
2024-07-27 05:57:34,347 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80 pTM=0.557 ipTM=0.183
2024-07-27 05:57:36,024 Done