2024-07-27 10:29:31,809 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 10:29:32,125 Running on GPU
2024-07-27 10:29:35,640 Found 6 citations for tools or databases
2024-07-27 10:29:35,640 Query 1/1: SCARB2_FBXO44 (length 733)
2024-07-27 10:29:36,083 Sleeping for 10s. Reason: PENDING
2024-07-27 10:29:46,510 Sleeping for 8s. Reason: RUNNING
2024-07-27 10:29:54,982 Sleeping for 6s. Reason: RUNNING
2024-07-27 10:30:01,386 Sleeping for 8s. Reason: RUNNING
2024-07-27 10:30:09,796 Sleeping for 8s. Reason: RUNNING
2024-07-27 10:30:18,212 Sleeping for 9s. Reason: RUNNING
2024-07-27 10:30:29,401 Sleeping for 8s. Reason: PENDING
2024-07-27 10:30:37,819 Sleeping for 8s. Reason: RUNNING
2024-07-27 10:30:46,252 Sleeping for 8s. Reason: RUNNING
2024-07-27 10:30:54,688 Sleeping for 7s. Reason: RUNNING
2024-07-27 10:31:04,680 Setting max_seq=508, max_extra_seq=2048
2024-07-27 10:33:59,600 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=83.8 pTM=0.589 ipTM=0.126
2024-07-27 10:34:10,169 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=86 pTM=0.626 ipTM=0.207 tol=8.7
2024-07-27 10:34:20,749 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=84.9 pTM=0.605 ipTM=0.144 tol=2.58
2024-07-27 10:34:31,351 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85.3 pTM=0.602 ipTM=0.14 tol=1.61
2024-07-27 10:34:41,977 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.8 pTM=0.614 ipTM=0.161 tol=1.05
2024-07-27 10:34:52,636 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.4 pTM=0.6 ipTM=0.133 tol=3.05
2024-07-27 10:35:03,301 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.3 pTM=0.6 ipTM=0.136 tol=1.21
2024-07-27 10:35:13,937 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=87.6 pTM=0.689 ipTM=0.451 tol=6.82
2024-07-27 10:35:24,586 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=88.3 pTM=0.727 ipTM=0.52 tol=2.26
2024-07-27 10:35:35,257 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=89.4 pTM=0.777 ipTM=0.63 tol=0.697
2024-07-27 10:35:45,922 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=89.1 pTM=0.781 ipTM=0.641 tol=0.44
2024-07-27 10:35:45,922 alphafold2_multimer_v3_model_1_seed_000 took 276.2s (10 recycles)
2024-07-27 10:35:56,954 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.1 pTM=0.594 ipTM=0.145
2024-07-27 10:36:07,674 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85.3 pTM=0.602 ipTM=0.144 tol=7.01
2024-07-27 10:36:18,380 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=85.3 pTM=0.594 ipTM=0.134 tol=3.73
2024-07-27 10:36:29,115 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=85.8 pTM=0.597 ipTM=0.139 tol=2.5
2024-07-27 10:36:39,867 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=85.8 pTM=0.598 ipTM=0.137 tol=16.8
2024-07-27 10:36:50,607 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=86.1 pTM=0.6 ipTM=0.137 tol=1.16
2024-07-27 10:37:01,344 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=85.9 pTM=0.598 ipTM=0.139 tol=0.867
2024-07-27 10:37:12,092 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=86.1 pTM=0.599 ipTM=0.141 tol=0.462
2024-07-27 10:37:12,093 alphafold2_multimer_v3_model_2_seed_000 took 85.8s (7 recycles)
2024-07-27 10:37:23,130 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.2 pTM=0.595 ipTM=0.135
2024-07-27 10:37:33,853 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.9 pTM=0.602 ipTM=0.127 tol=13.3
2024-07-27 10:37:44,585 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.8 pTM=0.602 ipTM=0.127 tol=2
2024-07-27 10:37:55,322 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=85.2 pTM=0.604 ipTM=0.135 tol=0.854
2024-07-27 10:38:06,027 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.4 pTM=0.604 ipTM=0.14 tol=1.91
2024-07-27 10:38:16,740 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.2 pTM=0.603 ipTM=0.139 tol=2.07
2024-07-27 10:38:27,463 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.1 pTM=0.601 ipTM=0.14 tol=2.22
2024-07-27 10:38:38,199 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85.2 pTM=0.602 ipTM=0.139 tol=2.53
2024-07-27 10:38:48,921 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=85.4 pTM=0.604 ipTM=0.14 tol=7.14
2024-07-27 10:38:59,643 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=85.5 pTM=0.606 ipTM=0.144 tol=1.97
2024-07-27 10:39:10,364 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=85.3 pTM=0.605 ipTM=0.144 tol=0.833
2024-07-27 10:39:21,071 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=85.5 pTM=0.607 ipTM=0.145 tol=1.8
2024-07-27 10:39:31,801 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=85.6 pTM=0.609 ipTM=0.149 tol=1.28
2024-07-27 10:39:42,510 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=85.6 pTM=0.607 ipTM=0.149 tol=0.914
2024-07-27 10:39:53,244 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=85.5 pTM=0.608 ipTM=0.149 tol=1.11
2024-07-27 10:40:03,978 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=85.6 pTM=0.61 ipTM=0.151 tol=0.621
2024-07-27 10:40:14,700 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=85.8 pTM=0.61 ipTM=0.15 tol=0.2
2024-07-27 10:40:14,700 alphafold2_multimer_v3_model_3_seed_000 took 182.3s (16 recycles)
2024-07-27 10:40:25,780 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.8 pTM=0.59 ipTM=0.133
2024-07-27 10:40:36,516 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84.8 pTM=0.602 ipTM=0.157 tol=16.1
2024-07-27 10:40:47,245 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=85 pTM=0.597 ipTM=0.13 tol=5.81
2024-07-27 10:40:57,998 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.2 pTM=0.596 ipTM=0.136 tol=5.16
2024-07-27 10:41:08,743 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=85.2 pTM=0.598 ipTM=0.14 tol=2.71
2024-07-27 10:41:19,482 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.9 pTM=0.596 ipTM=0.138 tol=1.84
2024-07-27 10:41:30,220 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.9 pTM=0.597 ipTM=0.14 tol=1.46
2024-07-27 10:41:40,970 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=85.1 pTM=0.597 ipTM=0.14 tol=1.65
2024-07-27 10:41:51,702 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=85.1 pTM=0.597 ipTM=0.14 tol=0.965
2024-07-27 10:42:02,441 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=85.4 pTM=0.595 ipTM=0.137 tol=2.93
2024-07-27 10:42:13,179 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=85.5 pTM=0.596 ipTM=0.132 tol=2.49
2024-07-27 10:42:23,913 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=85.8 pTM=0.598 ipTM=0.133 tol=0.813
2024-07-27 10:42:34,650 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=85.6 pTM=0.599 ipTM=0.134 tol=3.44
2024-07-27 10:42:45,373 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=85.1 pTM=0.598 ipTM=0.136 tol=0.827
2024-07-27 10:42:56,119 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=85.6 pTM=0.6 ipTM=0.135 tol=0.743
2024-07-27 10:43:06,864 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=85.5 pTM=0.6 ipTM=0.134 tol=1.63
2024-07-27 10:43:17,612 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=86.3 pTM=0.601 ipTM=0.131 tol=2.77
2024-07-27 10:43:28,348 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=85.3 pTM=0.598 ipTM=0.135 tol=4.57
2024-07-27 10:43:39,088 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=85.4 pTM=0.599 ipTM=0.138 tol=0.719
2024-07-27 10:43:49,831 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=85.7 pTM=0.6 ipTM=0.136 tol=1.67
2024-07-27 10:44:00,595 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=85.7 pTM=0.597 ipTM=0.135 tol=4
2024-07-27 10:44:11,350 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=85.6 pTM=0.595 ipTM=0.131 tol=2.9
2024-07-27 10:44:22,108 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=85.4 pTM=0.596 ipTM=0.135 tol=3.05
2024-07-27 10:44:32,838 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=85.4 pTM=0.596 ipTM=0.136 tol=2.47
2024-07-27 10:44:43,567 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=85.2 pTM=0.595 ipTM=0.137 tol=0.391
2024-07-27 10:44:43,567 alphafold2_multimer_v3_model_4_seed_000 took 268.5s (24 recycles)
2024-07-27 10:44:54,651 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.7 pTM=0.588 ipTM=0.133
2024-07-27 10:45:05,422 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=83.4 pTM=0.587 ipTM=0.135 tol=3.95
2024-07-27 10:45:16,186 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83.9 pTM=0.593 ipTM=0.136 tol=3.15
2024-07-27 10:45:26,923 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.6 pTM=0.597 ipTM=0.142 tol=2
2024-07-27 10:45:37,668 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.8 pTM=0.597 ipTM=0.141 tol=1.22
2024-07-27 10:45:48,432 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=84.8 pTM=0.601 ipTM=0.142 tol=1.84
2024-07-27 10:45:59,186 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=84.8 pTM=0.599 ipTM=0.149 tol=0.702
2024-07-27 10:46:09,938 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84.9 pTM=0.597 ipTM=0.141 tol=0.998
2024-07-27 10:46:20,673 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=85.1 pTM=0.612 ipTM=0.17 tol=2.06
2024-07-27 10:46:31,410 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=85.7 pTM=0.608 ipTM=0.157 tol=0.802
2024-07-27 10:46:42,151 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=85 pTM=0.601 ipTM=0.147 tol=1.29
2024-07-27 10:46:52,903 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=85.1 pTM=0.601 ipTM=0.146 tol=0.987
2024-07-27 10:47:03,652 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=85.1 pTM=0.602 ipTM=0.144 tol=1.82
2024-07-27 10:47:14,395 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=84.9 pTM=0.601 ipTM=0.15 tol=1.79
2024-07-27 10:47:25,141 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=85.3 pTM=0.603 ipTM=0.146 tol=1.57
2024-07-27 10:47:35,890 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=85.2 pTM=0.603 ipTM=0.146 tol=0.593
2024-07-27 10:47:46,636 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=85.1 pTM=0.604 ipTM=0.147 tol=0.41
2024-07-27 10:47:46,637 alphafold2_multimer_v3_model_5_seed_000 took 182.7s (16 recycles)
2024-07-27 10:47:46,974 reranking models by 'multimer' metric
2024-07-27 10:47:50,350 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 10:48:11,573 Relaxation took 24.6s
2024-07-27 10:48:11,573 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=89.1 pTM=0.781 ipTM=0.641
2024-07-27 10:48:59,309 Relaxation took 47.7s
2024-07-27 10:48:59,309 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.8 pTM=0.61 ipTM=0.15
2024-07-27 10:49:40,273 Relaxation took 41.0s
2024-07-27 10:49:40,273 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.1 pTM=0.604 ipTM=0.147
2024-07-27 10:50:32,686 Relaxation took 52.4s
2024-07-27 10:50:32,686 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=86.1 pTM=0.599 ipTM=0.141
2024-07-27 10:51:18,962 Relaxation took 46.3s
2024-07-27 10:51:18,962 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=85.2 pTM=0.595 ipTM=0.137
2024-07-27 10:51:20,387 Done