2024-07-27 11:56:03,377 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 11:56:03,708 Running on GPU
2024-07-27 11:56:07,107 Found 6 citations for tools or databases
2024-07-27 11:56:07,108 Query 1/1: SLC29A3_FBXL18 (length 1193)
2024-07-27 11:56:07,555 Sleeping for 5s. Reason: PENDING
2024-07-27 11:56:12,998 Sleeping for 5s. Reason: RUNNING
2024-07-27 11:56:18,410 Sleeping for 9s. Reason: RUNNING
2024-07-27 11:56:27,825 Sleeping for 9s. Reason: RUNNING
2024-07-27 11:56:37,230 Sleeping for 6s. Reason: RUNNING
2024-07-27 11:56:43,662 Sleeping for 10s. Reason: RUNNING
2024-07-27 11:56:54,073 Sleeping for 9s. Reason: RUNNING
2024-07-27 11:57:03,488 Sleeping for 10s. Reason: RUNNING
2024-07-27 11:57:13,910 Sleeping for 6s. Reason: RUNNING
2024-07-27 11:57:21,830 Sleeping for 7s. Reason: PENDING
2024-07-27 11:57:29,271 Sleeping for 6s. Reason: RUNNING
2024-07-27 11:57:35,708 Sleeping for 5s. Reason: RUNNING
2024-07-27 11:57:41,122 Sleeping for 7s. Reason: RUNNING
2024-07-27 11:57:48,556 Sleeping for 9s. Reason: RUNNING
2024-07-27 11:57:58,007 Sleeping for 8s. Reason: RUNNING
2024-07-27 11:58:08,553 Setting max_seq=508, max_extra_seq=2048
2024-07-27 12:02:01,238 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.2 pTM=0.604 ipTM=0.242
2024-07-27 12:02:35,975 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.9 pTM=0.611 ipTM=0.256 tol=6.89
2024-07-27 12:03:10,960 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.3 pTM=0.595 ipTM=0.215 tol=2.12
2024-07-27 12:03:46,070 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.2 pTM=0.591 ipTM=0.208 tol=1.26
2024-07-27 12:04:21,272 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.2 pTM=0.59 ipTM=0.207 tol=0.926
2024-07-27 12:04:56,537 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.4 pTM=0.594 ipTM=0.22 tol=0.764
2024-07-27 12:05:31,808 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.2 pTM=0.592 ipTM=0.219 tol=0.45
2024-07-27 12:05:31,809 alphafold2_multimer_v3_model_1_seed_000 took 438.5s (6 recycles)
2024-07-27 12:06:07,972 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.8 pTM=0.57 ipTM=0.17
2024-07-27 12:06:43,321 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.9 pTM=0.58 ipTM=0.181 tol=16.1
2024-07-27 12:07:18,617 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.4 pTM=0.609 ipTM=0.255 tol=4.13
2024-07-27 12:07:53,881 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.2 pTM=0.609 ipTM=0.259 tol=4.94
2024-07-27 12:08:29,121 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.9 pTM=0.621 ipTM=0.287 tol=5.07
2024-07-27 12:09:04,370 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.8 pTM=0.619 ipTM=0.286 tol=1.76
2024-07-27 12:09:39,601 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.6 pTM=0.622 ipTM=0.291 tol=0.878
2024-07-27 12:10:14,852 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.9 pTM=0.622 ipTM=0.29 tol=0.828
2024-07-27 12:10:50,112 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=79.1 pTM=0.621 ipTM=0.287 tol=0.555
2024-07-27 12:11:25,360 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.9 pTM=0.625 ipTM=0.299 tol=0.469
2024-07-27 12:11:25,361 alphafold2_multimer_v3_model_2_seed_000 took 352.7s (9 recycles)
2024-07-27 12:12:01,437 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.5 pTM=0.628 ipTM=0.265
2024-07-27 12:12:36,642 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.6 pTM=0.706 ipTM=0.448 tol=4.23
2024-07-27 12:13:11,875 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.7 pTM=0.684 ipTM=0.394 tol=4.85
2024-07-27 12:13:47,083 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.1 pTM=0.71 ipTM=0.461 tol=3.52
2024-07-27 12:14:22,311 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.9 pTM=0.683 ipTM=0.395 tol=1.45
2024-07-27 12:14:57,535 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.4 pTM=0.712 ipTM=0.468 tol=0.761
2024-07-27 12:15:32,732 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.9 pTM=0.688 ipTM=0.408 tol=0.702
2024-07-27 12:16:07,950 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.6 pTM=0.718 ipTM=0.482 tol=0.571
2024-07-27 12:16:43,147 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.2 pTM=0.7 ipTM=0.435 tol=0.521
2024-07-27 12:17:18,337 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.7 pTM=0.723 ipTM=0.492 tol=0.404
2024-07-27 12:17:18,338 alphafold2_multimer_v3_model_3_seed_000 took 352.1s (9 recycles)
2024-07-27 12:17:54,405 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.9 pTM=0.572 ipTM=0.171
2024-07-27 12:18:29,679 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.5 pTM=0.584 ipTM=0.167 tol=14.3
2024-07-27 12:19:04,959 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.6 pTM=0.604 ipTM=0.205 tol=5.02
2024-07-27 12:19:40,142 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.2 pTM=0.608 ipTM=0.218 tol=1.27
2024-07-27 12:20:15,329 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.7 pTM=0.612 ipTM=0.227 tol=0.767
2024-07-27 12:20:50,507 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.4 pTM=0.611 ipTM=0.222 tol=1.3
2024-07-27 12:21:25,715 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.6 pTM=0.616 ipTM=0.239 tol=1.03
2024-07-27 12:22:00,955 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.8 pTM=0.617 ipTM=0.236 tol=1.44
2024-07-27 12:22:36,149 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.8 pTM=0.616 ipTM=0.233 tol=2.22
2024-07-27 12:23:11,418 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.8 pTM=0.619 ipTM=0.244 tol=1.84
2024-07-27 12:23:46,736 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80 pTM=0.625 ipTM=0.256 tol=1.29
2024-07-27 12:24:22,041 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.9 pTM=0.622 ipTM=0.244 tol=0.858
2024-07-27 12:24:57,348 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80.2 pTM=0.622 ipTM=0.25 tol=2.44
2024-07-27 12:25:32,634 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.2 pTM=0.623 ipTM=0.247 tol=1.4
2024-07-27 12:26:07,882 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80.2 pTM=0.625 ipTM=0.254 tol=0.697
2024-07-27 12:26:43,087 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.8 pTM=0.618 ipTM=0.239 tol=1.71
2024-07-27 12:27:18,291 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.1 pTM=0.625 ipTM=0.257 tol=2.39
2024-07-27 12:27:53,497 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.9 pTM=0.622 ipTM=0.248 tol=2.01
2024-07-27 12:28:28,792 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=80.2 pTM=0.626 ipTM=0.263 tol=2.01
2024-07-27 12:29:04,085 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.1 pTM=0.62 ipTM=0.243 tol=2.71
2024-07-27 12:29:39,367 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80.2 pTM=0.624 ipTM=0.253 tol=2.31
2024-07-27 12:30:14,625 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80 pTM=0.623 ipTM=0.25 tol=2.68
2024-07-27 12:30:49,905 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.2 pTM=0.624 ipTM=0.252 tol=3.26
2024-07-27 12:31:25,168 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80.1 pTM=0.623 ipTM=0.251 tol=3.37
2024-07-27 12:32:00,472 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80.3 pTM=0.627 ipTM=0.261 tol=2.33
2024-07-27 12:32:35,744 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=79.9 pTM=0.621 ipTM=0.246 tol=2.06
2024-07-27 12:33:11,013 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.1 pTM=0.625 ipTM=0.257 tol=2.36
2024-07-27 12:33:46,266 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.1 pTM=0.627 ipTM=0.263 tol=2.71
2024-07-27 12:34:21,515 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80 pTM=0.629 ipTM=0.271 tol=3.16
2024-07-27 12:34:56,747 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.1 pTM=0.621 ipTM=0.248 tol=1.38
2024-07-27 12:35:32,022 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=80.2 pTM=0.626 ipTM=0.261 tol=1.4
2024-07-27 12:35:32,023 alphafold2_multimer_v3_model_4_seed_000 took 1092.8s (30 recycles)
2024-07-27 12:36:08,106 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.9 pTM=0.572 ipTM=0.153
2024-07-27 12:36:43,395 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.7 pTM=0.622 ipTM=0.241 tol=16.8
2024-07-27 12:37:18,674 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.1 pTM=0.654 ipTM=0.314 tol=2.16
2024-07-27 12:37:53,902 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.3 pTM=0.649 ipTM=0.303 tol=1.03
2024-07-27 12:38:29,126 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.2 pTM=0.653 ipTM=0.312 tol=1.23
2024-07-27 12:39:04,350 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.4 pTM=0.648 ipTM=0.3 tol=0.921
2024-07-27 12:39:39,584 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.1 pTM=0.651 ipTM=0.31 tol=1.59
2024-07-27 12:40:14,863 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.5 pTM=0.648 ipTM=0.299 tol=1.88
2024-07-27 12:40:50,135 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.4 pTM=0.651 ipTM=0.306 tol=0.586
2024-07-27 12:41:25,428 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.4 pTM=0.653 ipTM=0.31 tol=0.746
2024-07-27 12:42:00,736 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.5 pTM=0.653 ipTM=0.31 tol=0.81
2024-07-27 12:42:36,049 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.5 pTM=0.643 ipTM=0.285 tol=0.694
2024-07-27 12:43:11,337 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.4 pTM=0.642 ipTM=0.284 tol=1.53
2024-07-27 12:43:46,635 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.7 pTM=0.643 ipTM=0.287 tol=1.49
2024-07-27 12:44:21,917 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.6 pTM=0.648 ipTM=0.299 tol=1.53
2024-07-27 12:44:57,194 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.3 pTM=0.64 ipTM=0.28 tol=1.59
2024-07-27 12:45:32,487 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.4 pTM=0.653 ipTM=0.314 tol=1.41
2024-07-27 12:46:07,767 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=79.5 pTM=0.65 ipTM=0.308 tol=1.32
2024-07-27 12:46:43,037 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.4 pTM=0.651 ipTM=0.311 tol=0.991
2024-07-27 12:47:18,315 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79.6 pTM=0.636 ipTM=0.271 tol=0.719
2024-07-27 12:47:53,580 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=79.2 pTM=0.629 ipTM=0.256 tol=0.639
2024-07-27 12:48:28,862 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.1 pTM=0.619 ipTM=0.233 tol=0.725
2024-07-27 12:49:04,139 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.2 pTM=0.625 ipTM=0.249 tol=0.953
2024-07-27 12:49:39,412 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.2 pTM=0.632 ipTM=0.263 tol=0.857
2024-07-27 12:50:14,689 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=79.4 pTM=0.622 ipTM=0.242 tol=1.12
2024-07-27 12:50:49,968 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.1 pTM=0.613 ipTM=0.222 tol=1.95
2024-07-27 12:51:25,234 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=79.2 pTM=0.627 ipTM=0.254 tol=2.19
2024-07-27 12:52:00,495 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.1 pTM=0.639 ipTM=0.281 tol=1.52
2024-07-27 12:52:35,733 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.1 pTM=0.631 ipTM=0.262 tol=1.58
2024-07-27 12:53:11,015 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.2 pTM=0.616 ipTM=0.231 tol=1.87
2024-07-27 12:53:46,269 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=79 pTM=0.615 ipTM=0.229 tol=1.7
2024-07-27 12:53:46,270 alphafold2_multimer_v3_model_5_seed_000 took 1093.4s (30 recycles)
2024-07-27 12:53:47,121 reranking models by 'multimer' metric
2024-07-27 12:53:50,480 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 12:54:50,755 Relaxation took 63.6s
2024-07-27 12:54:50,755 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.7 pTM=0.723 ipTM=0.492
2024-07-27 12:56:25,248 Relaxation took 94.5s
2024-07-27 12:56:25,248 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.9 pTM=0.625 ipTM=0.299
2024-07-27 12:57:12,831 Relaxation took 47.6s
2024-07-27 12:57:12,831 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.2 pTM=0.626 ipTM=0.261
2024-07-27 12:59:03,457 Relaxation took 110.6s
2024-07-27 12:59:03,457 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79 pTM=0.615 ipTM=0.229
2024-07-27 12:59:42,104 Relaxation took 38.6s
2024-07-27 12:59:42,105 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.2 pTM=0.592 ipTM=0.219
2024-07-27 12:59:44,489 Done