2024-07-27 14:05:12,121 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 14:05:12,437 Running on GPU
2024-07-27 14:05:16,360 Found 6 citations for tools or databases
2024-07-27 14:05:16,360 Query 1/1: SOX9_KBTBD2 (length 1132)
2024-07-27 14:05:16,809 Sleeping for 8s. Reason: PENDING
2024-07-27 14:05:25,249 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:05:34,672 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:05:44,093 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:05:53,515 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:06:00,955 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:06:09,374 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:06:15,772 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:06:26,203 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:06:35,621 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:06:44,053 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:06:50,467 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:06:59,909 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:07:08,342 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:07:16,791 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:07:25,210 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:07:32,642 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:07:39,093 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:07:46,524 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:07:55,759 Sleeping for 6s. Reason: PENDING
2024-07-27 14:08:02,178 Sleeping for 10s. Reason: PENDING
2024-07-27 14:08:12,595 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:08:21,035 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:08:31,448 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:08:41,878 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:08:49,313 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:08:56,760 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:09:03,189 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:09:08,603 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:09:19,029 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:09:28,449 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:09:33,857 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:09:42,272 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:09:47,708 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:09:54,166 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:10:07,809 Setting max_seq=508, max_extra_seq=2048
2024-07-27 14:13:08,252 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=55.2 pTM=0.507 ipTM=0.164
2024-07-27 14:13:38,373 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=54.9 pTM=0.509 ipTM=0.154 tol=12.5
2024-07-27 14:14:08,651 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=55.6 pTM=0.509 ipTM=0.158 tol=8.12
2024-07-27 14:14:38,999 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=55 pTM=0.5 ipTM=0.155 tol=3.98
2024-07-27 14:15:09,406 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=55.4 pTM=0.5 ipTM=0.156 tol=5.17
2024-07-27 14:15:39,876 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=55 pTM=0.497 ipTM=0.159 tol=11
2024-07-27 14:16:10,385 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=55.4 pTM=0.498 ipTM=0.152 tol=7.25
2024-07-27 14:16:40,931 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=55.4 pTM=0.501 ipTM=0.154 tol=3.94
2024-07-27 14:17:11,451 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=55.2 pTM=0.5 ipTM=0.153 tol=4.46
2024-07-27 14:17:41,968 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=55.1 pTM=0.5 ipTM=0.154 tol=3.59
2024-07-27 14:18:12,491 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=55 pTM=0.5 ipTM=0.153 tol=3.61
2024-07-27 14:18:43,027 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=55.2 pTM=0.5 ipTM=0.159 tol=4.51
2024-07-27 14:19:13,585 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=55 pTM=0.5 ipTM=0.158 tol=5.48
2024-07-27 14:19:44,145 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=55.3 pTM=0.502 ipTM=0.158 tol=6.2
2024-07-27 14:20:14,693 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=55.2 pTM=0.501 ipTM=0.154 tol=4.15
2024-07-27 14:20:45,284 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=55 pTM=0.501 ipTM=0.155 tol=3.49
2024-07-27 14:21:15,869 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=55.1 pTM=0.5 ipTM=0.154 tol=3.15
2024-07-27 14:21:46,502 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=55.2 pTM=0.501 ipTM=0.157 tol=5.18
2024-07-27 14:22:17,111 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=55.2 pTM=0.501 ipTM=0.159 tol=2.88
2024-07-27 14:22:47,709 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=55 pTM=0.5 ipTM=0.157 tol=3.6
2024-07-27 14:23:18,329 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=55.1 pTM=0.5 ipTM=0.156 tol=1.89
2024-07-27 14:23:48,909 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=55 pTM=0.499 ipTM=0.16 tol=1.69
2024-07-27 14:24:19,461 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=55.2 pTM=0.499 ipTM=0.157 tol=3.81
2024-07-27 14:24:50,022 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=55 pTM=0.5 ipTM=0.161 tol=4.89
2024-07-27 14:25:20,584 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=55.3 pTM=0.5 ipTM=0.157 tol=6.11
2024-07-27 14:25:51,156 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=55 pTM=0.5 ipTM=0.16 tol=2.01
2024-07-27 14:26:21,717 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=55.5 pTM=0.498 ipTM=0.157 tol=2.67
2024-07-27 14:26:52,276 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=55 pTM=0.5 ipTM=0.165 tol=2.81
2024-07-27 14:27:22,825 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=55.2 pTM=0.496 ipTM=0.156 tol=2.61
2024-07-27 14:27:53,418 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=55.2 pTM=0.5 ipTM=0.159 tol=2.72
2024-07-27 14:28:24,033 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=55.7 pTM=0.5 ipTM=0.156 tol=1.95
2024-07-27 14:28:24,033 alphafold2_multimer_v3_model_1_seed_000 took 1091.3s (30 recycles)
2024-07-27 14:28:55,479 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=55.4 pTM=0.508 ipTM=0.16
2024-07-27 14:29:26,095 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=56.1 pTM=0.52 ipTM=0.196 tol=11.7
2024-07-27 14:29:56,724 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=55.9 pTM=0.518 ipTM=0.161 tol=7.76
2024-07-27 14:30:27,353 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=56.1 pTM=0.511 ipTM=0.151 tol=5.34
2024-07-27 14:30:58,002 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=56 pTM=0.511 ipTM=0.149 tol=4.09
2024-07-27 14:31:28,610 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55.9 pTM=0.508 ipTM=0.145 tol=3.29
2024-07-27 14:31:59,190 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=56.2 pTM=0.506 ipTM=0.142 tol=2.38
2024-07-27 14:32:29,784 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=56.1 pTM=0.505 ipTM=0.141 tol=2.73
2024-07-27 14:33:00,384 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=56.2 pTM=0.504 ipTM=0.14 tol=2.17
2024-07-27 14:33:31,019 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=56.1 pTM=0.502 ipTM=0.141 tol=3.54
2024-07-27 14:34:01,577 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=56.1 pTM=0.503 ipTM=0.14 tol=2.51
2024-07-27 14:34:32,141 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=55.8 pTM=0.503 ipTM=0.141 tol=5.55
2024-07-27 14:35:02,692 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=55.9 pTM=0.503 ipTM=0.141 tol=3.68
2024-07-27 14:35:33,245 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=56.1 pTM=0.503 ipTM=0.144 tol=10.4
2024-07-27 14:36:03,754 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=56.2 pTM=0.505 ipTM=0.14 tol=8.26
2024-07-27 14:36:34,298 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=56.1 pTM=0.504 ipTM=0.141 tol=4.4
2024-07-27 14:37:04,843 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=56 pTM=0.503 ipTM=0.144 tol=6.39
2024-07-27 14:37:35,407 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=56.1 pTM=0.503 ipTM=0.141 tol=5.43
2024-07-27 14:38:05,994 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=56.2 pTM=0.503 ipTM=0.142 tol=4.07
2024-07-27 14:38:36,573 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=56 pTM=0.502 ipTM=0.141 tol=3.4
2024-07-27 14:39:07,196 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=56.1 pTM=0.503 ipTM=0.137 tol=5.44
2024-07-27 14:39:37,793 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55.9 pTM=0.503 ipTM=0.136 tol=4
2024-07-27 14:40:08,406 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=56.1 pTM=0.504 ipTM=0.14 tol=8.12
2024-07-27 14:40:39,015 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=56.1 pTM=0.506 ipTM=0.136 tol=4.07
2024-07-27 14:41:09,625 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=56.1 pTM=0.506 ipTM=0.134 tol=2.89
2024-07-27 14:41:40,218 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.8 pTM=0.504 ipTM=0.134 tol=2.52
2024-07-27 14:42:10,832 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55.9 pTM=0.502 ipTM=0.134 tol=2.25
2024-07-27 14:42:41,432 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=55.9 pTM=0.505 ipTM=0.134 tol=2.9
2024-07-27 14:43:12,083 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.9 pTM=0.503 ipTM=0.133 tol=2.55
2024-07-27 14:43:42,752 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.9 pTM=0.504 ipTM=0.136 tol=5.41
2024-07-27 14:44:13,399 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=56.3 pTM=0.504 ipTM=0.136 tol=5.11
2024-07-27 14:44:13,400 alphafold2_multimer_v3_model_2_seed_000 took 948.6s (30 recycles)
2024-07-27 14:44:44,840 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=55.6 pTM=0.5 ipTM=0.153
2024-07-27 14:45:15,413 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=56.1 pTM=0.502 ipTM=0.194 tol=22.6
2024-07-27 14:45:46,000 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=55.1 pTM=0.492 ipTM=0.16 tol=10.2
2024-07-27 14:46:16,642 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=55.2 pTM=0.494 ipTM=0.159 tol=10.4
2024-07-27 14:46:47,317 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=55.3 pTM=0.493 ipTM=0.159 tol=11.9
2024-07-27 14:47:17,963 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.4 pTM=0.492 ipTM=0.157 tol=5.71
2024-07-27 14:47:48,661 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.7 pTM=0.492 ipTM=0.149 tol=7
2024-07-27 14:48:19,307 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.4 pTM=0.492 ipTM=0.158 tol=15.6
2024-07-27 14:48:50,054 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=56.2 pTM=0.496 ipTM=0.156 tol=8.23
2024-07-27 14:49:20,810 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.3 pTM=0.494 ipTM=0.149 tol=14.5
2024-07-27 14:49:51,598 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.8 pTM=0.495 ipTM=0.143 tol=10.2
2024-07-27 14:50:22,351 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.5 pTM=0.493 ipTM=0.141 tol=7.57
2024-07-27 14:50:53,113 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=56.1 pTM=0.499 ipTM=0.174 tol=11.7
2024-07-27 14:51:23,808 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.9 pTM=0.494 ipTM=0.149 tol=5.7
2024-07-27 14:51:54,457 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.8 pTM=0.494 ipTM=0.164 tol=4.46
2024-07-27 14:52:25,107 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=56.1 pTM=0.5 ipTM=0.187 tol=3.94
2024-07-27 14:52:55,773 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=56.1 pTM=0.496 ipTM=0.174 tol=2.68
2024-07-27 14:53:26,424 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.5 pTM=0.495 ipTM=0.174 tol=2.65
2024-07-27 14:53:57,094 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=56.1 pTM=0.495 ipTM=0.166 tol=2.1
2024-07-27 14:54:27,812 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.2 pTM=0.491 ipTM=0.143 tol=12.2
2024-07-27 14:54:58,548 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=55.9 pTM=0.5 ipTM=0.192 tol=14
2024-07-27 14:55:29,300 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=56.1 pTM=0.495 ipTM=0.181 tol=3.79
2024-07-27 14:56:00,052 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.9 pTM=0.493 ipTM=0.148 tol=4.96
2024-07-27 14:56:30,816 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.5 pTM=0.491 ipTM=0.142 tol=8.64
2024-07-27 14:57:01,595 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.4 pTM=0.491 ipTM=0.15 tol=11
2024-07-27 14:57:32,381 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.6 pTM=0.489 ipTM=0.142 tol=7.39
2024-07-27 14:58:03,134 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=56 pTM=0.494 ipTM=0.193 tol=8.7
2024-07-27 14:58:33,878 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=56.1 pTM=0.488 ipTM=0.158 tol=3.95
2024-07-27 14:59:04,649 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55.4 pTM=0.49 ipTM=0.164 tol=18.2
2024-07-27 14:59:35,406 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.5 pTM=0.487 ipTM=0.149 tol=6.65
2024-07-27 15:00:06,164 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.6 pTM=0.49 ipTM=0.177 tol=16.4
2024-07-27 15:00:06,165 alphafold2_multimer_v3_model_3_seed_000 took 952.0s (30 recycles)
2024-07-27 15:00:37,682 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=55 pTM=0.532 ipTM=0.294
2024-07-27 15:01:08,368 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=55.1 pTM=0.515 ipTM=0.163 tol=15
2024-07-27 15:01:38,998 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=55.9 pTM=0.523 ipTM=0.221 tol=11.5
2024-07-27 15:02:09,667 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=56.3 pTM=0.522 ipTM=0.221 tol=6.44
2024-07-27 15:02:40,348 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55.9 pTM=0.516 ipTM=0.214 tol=7.18
2024-07-27 15:03:11,081 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.6 pTM=0.513 ipTM=0.183 tol=6.26
2024-07-27 15:03:41,801 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=55.2 pTM=0.506 ipTM=0.172 tol=7.96
2024-07-27 15:04:12,546 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.7 pTM=0.508 ipTM=0.17 tol=7.64
2024-07-27 15:04:43,290 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=55.5 pTM=0.504 ipTM=0.16 tol=12.6
2024-07-27 15:05:14,025 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=55.1 pTM=0.506 ipTM=0.16 tol=11.8
2024-07-27 15:05:44,757 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=54.9 pTM=0.505 ipTM=0.162 tol=8.57
2024-07-27 15:06:15,466 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.1 pTM=0.502 ipTM=0.158 tol=9.88
2024-07-27 15:06:46,157 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=54.8 pTM=0.505 ipTM=0.162 tol=9.49
2024-07-27 15:07:16,848 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=55.4 pTM=0.506 ipTM=0.162 tol=8.16
2024-07-27 15:07:47,530 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=55.4 pTM=0.508 ipTM=0.161 tol=7.52
2024-07-27 15:08:18,255 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.3 pTM=0.507 ipTM=0.165 tol=5.53
2024-07-27 15:08:49,022 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=55 pTM=0.503 ipTM=0.162 tol=11.1
2024-07-27 15:09:19,791 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55.4 pTM=0.506 ipTM=0.163 tol=7.7
2024-07-27 15:09:50,542 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=54.9 pTM=0.502 ipTM=0.16 tol=10.6
2024-07-27 15:10:21,288 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55 pTM=0.502 ipTM=0.155 tol=7.59
2024-07-27 15:10:52,036 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55 pTM=0.504 ipTM=0.162 tol=7.43
2024-07-27 15:11:22,776 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.1 pTM=0.505 ipTM=0.164 tol=8.08
2024-07-27 15:11:53,505 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=55.4 pTM=0.508 ipTM=0.177 tol=9.2
2024-07-27 15:12:24,233 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55 pTM=0.503 ipTM=0.155 tol=16.3
2024-07-27 15:12:54,989 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=55.1 pTM=0.506 ipTM=0.168 tol=14.6
2024-07-27 15:13:25,732 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55 pTM=0.501 ipTM=0.16 tol=8.3
2024-07-27 15:13:56,454 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=55.2 pTM=0.507 ipTM=0.196 tol=13.1
2024-07-27 15:14:27,191 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.5 pTM=0.507 ipTM=0.19 tol=7.85
2024-07-27 15:14:57,915 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=54.7 pTM=0.501 ipTM=0.161 tol=8.02
2024-07-27 15:15:28,612 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=54.8 pTM=0.501 ipTM=0.155 tol=7.34
2024-07-27 15:15:59,313 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55.2 pTM=0.504 ipTM=0.159 tol=8.23
2024-07-27 15:15:59,314 alphafold2_multimer_v3_model_4_seed_000 took 952.4s (30 recycles)
2024-07-27 15:16:30,855 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55.5 pTM=0.521 ipTM=0.154
2024-07-27 15:17:01,611 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=56.4 pTM=0.512 ipTM=0.163 tol=20.2
2024-07-27 15:17:32,347 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=56 pTM=0.515 ipTM=0.158 tol=6.81
2024-07-27 15:18:03,107 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=56.2 pTM=0.508 ipTM=0.155 tol=5.61
2024-07-27 15:18:33,905 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=56.1 pTM=0.512 ipTM=0.149 tol=4.79
2024-07-27 15:19:04,683 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=56.2 pTM=0.515 ipTM=0.162 tol=5.73
2024-07-27 15:19:35,426 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=56.3 pTM=0.512 ipTM=0.152 tol=4.1
2024-07-27 15:20:06,201 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=56.3 pTM=0.514 ipTM=0.149 tol=4.94
2024-07-27 15:20:36,954 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=56.5 pTM=0.516 ipTM=0.158 tol=4.04
2024-07-27 15:21:07,691 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=56.2 pTM=0.516 ipTM=0.151 tol=4.04
2024-07-27 15:21:38,436 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=56.2 pTM=0.518 ipTM=0.151 tol=8.86
2024-07-27 15:22:09,188 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=56.3 pTM=0.517 ipTM=0.155 tol=8.4
2024-07-27 15:22:39,982 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=56.2 pTM=0.519 ipTM=0.15 tol=7.99
2024-07-27 15:23:10,735 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=56.3 pTM=0.518 ipTM=0.155 tol=8.84
2024-07-27 15:23:41,477 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=56.3 pTM=0.52 ipTM=0.15 tol=8.63
2024-07-27 15:24:12,213 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=56.5 pTM=0.52 ipTM=0.154 tol=4.47
2024-07-27 15:24:42,945 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=56.4 pTM=0.521 ipTM=0.15 tol=7.1
2024-07-27 15:25:13,658 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=56.5 pTM=0.52 ipTM=0.154 tol=7.49
2024-07-27 15:25:44,376 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=56.2 pTM=0.518 ipTM=0.151 tol=8.19
2024-07-27 15:26:15,078 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=56.3 pTM=0.518 ipTM=0.152 tol=5.81
2024-07-27 15:26:45,774 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=56.4 pTM=0.52 ipTM=0.152 tol=8.7
2024-07-27 15:27:16,467 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=56.5 pTM=0.518 ipTM=0.154 tol=6.28
2024-07-27 15:27:47,204 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=56.3 pTM=0.521 ipTM=0.152 tol=5.86
2024-07-27 15:28:17,922 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=56.3 pTM=0.519 ipTM=0.155 tol=5.2
2024-07-27 15:28:48,648 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=56.3 pTM=0.519 ipTM=0.151 tol=4.14
2024-07-27 15:29:19,348 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=56.2 pTM=0.518 ipTM=0.153 tol=4.13
2024-07-27 15:29:50,050 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=56.2 pTM=0.514 ipTM=0.151 tol=4.67
2024-07-27 15:30:20,787 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=56.1 pTM=0.515 ipTM=0.152 tol=6.81
2024-07-27 15:30:51,491 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=56.2 pTM=0.516 ipTM=0.15 tol=5.3
2024-07-27 15:31:22,198 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=56.2 pTM=0.517 ipTM=0.154 tol=2.87
2024-07-27 15:31:52,953 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=56.2 pTM=0.517 ipTM=0.15 tol=3.91
2024-07-27 15:31:52,954 alphafold2_multimer_v3_model_5_seed_000 took 952.9s (30 recycles)
2024-07-27 15:31:53,727 reranking models by 'multimer' metric
2024-07-27 15:31:54,931 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 15:34:36,696 Relaxation took 163.0s
2024-07-27 15:34:36,696 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.6 pTM=0.49 ipTM=0.177
2024-07-27 15:36:12,210 Relaxation took 95.5s
2024-07-27 15:36:12,210 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55.2 pTM=0.504 ipTM=0.159
2024-07-27 15:38:12,672 Relaxation took 120.5s
2024-07-27 15:38:12,672 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=55.7 pTM=0.5 ipTM=0.156
2024-07-27 15:39:54,511 Relaxation took 101.8s
2024-07-27 15:39:54,512 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=56.2 pTM=0.517 ipTM=0.15
2024-07-27 15:42:08,881 Relaxation took 134.4s
2024-07-27 15:42:08,881 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=56.3 pTM=0.504 ipTM=0.136
2024-07-27 15:42:11,090 Done