2024-07-27 14:06:14,104 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 14:06:14,454 Running on GPU
2024-07-27 14:06:18,212 Found 6 citations for tools or databases
2024-07-27 14:06:18,212 Query 1/1: SOX9_KLHL28 (length 1080)
2024-07-27 14:06:18,705 Sleeping for 9s. Reason: PENDING
2024-07-27 14:06:28,144 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:06:34,571 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:06:42,009 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:06:47,426 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:06:56,862 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:07:06,294 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:07:16,730 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:07:26,148 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:07:31,594 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:07:41,018 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:07:48,448 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:07:54,873 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:08:01,300 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:08:11,737 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:08:17,162 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:08:22,581 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:08:28,014 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:08:34,443 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:08:39,859 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:08:46,271 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:08:51,679 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:09:01,099 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:09:11,544 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:09:16,990 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:09:22,419 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:09:32,827 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:09:43,257 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:09:53,583 Sleeping for 9s. Reason: PENDING
2024-07-27 14:10:02,998 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:10:09,438 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:10:16,860 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:10:27,292 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:10:32,713 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:10:42,138 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:10:49,573 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:11:00,013 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:11:08,448 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:11:16,865 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:11:22,269 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:11:30,732 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:11:42,511 Setting max_seq=508, max_extra_seq=2048
2024-07-27 14:14:47,089 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=59.6 pTM=0.536 ipTM=0.386
2024-07-27 14:15:14,216 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.8 pTM=0.532 ipTM=0.39 tol=8.72
2024-07-27 14:15:41,408 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=59.8 pTM=0.53 ipTM=0.325 tol=4.43
2024-07-27 14:16:08,659 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=59.5 pTM=0.527 ipTM=0.29 tol=6.12
2024-07-27 14:16:35,955 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=59.1 pTM=0.525 ipTM=0.28 tol=5.07
2024-07-27 14:17:03,271 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=59.1 pTM=0.525 ipTM=0.249 tol=3.93
2024-07-27 14:17:30,599 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=59 pTM=0.524 ipTM=0.226 tol=2.45
2024-07-27 14:17:57,931 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=59.2 pTM=0.525 ipTM=0.206 tol=3.07
2024-07-27 14:18:25,252 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=59.1 pTM=0.524 ipTM=0.194 tol=3.04
2024-07-27 14:18:52,599 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=59.3 pTM=0.526 ipTM=0.181 tol=2.79
2024-07-27 14:19:19,939 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=59.3 pTM=0.527 ipTM=0.179 tol=2.36
2024-07-27 14:19:47,287 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=59.3 pTM=0.526 ipTM=0.188 tol=2.69
2024-07-27 14:20:14,616 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=59.1 pTM=0.525 ipTM=0.194 tol=2.18
2024-07-27 14:20:41,968 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=59.1 pTM=0.524 ipTM=0.191 tol=2.23
2024-07-27 14:21:09,326 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=59.2 pTM=0.526 ipTM=0.188 tol=2.35
2024-07-27 14:21:36,656 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=59.1 pTM=0.521 ipTM=0.188 tol=2.72
2024-07-27 14:22:04,000 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=59.2 pTM=0.521 ipTM=0.178 tol=1.94
2024-07-27 14:22:31,353 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=59.2 pTM=0.521 ipTM=0.179 tol=2.16
2024-07-27 14:22:58,700 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.9 pTM=0.519 ipTM=0.18 tol=2.63
2024-07-27 14:23:26,045 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=59 pTM=0.52 ipTM=0.175 tol=1.67
2024-07-27 14:23:53,381 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=59 pTM=0.521 ipTM=0.179 tol=2.67
2024-07-27 14:24:20,719 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=59 pTM=0.52 ipTM=0.18 tol=2.37
2024-07-27 14:24:48,043 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.9 pTM=0.519 ipTM=0.19 tol=2.07
2024-07-27 14:25:15,369 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.8 pTM=0.519 ipTM=0.18 tol=2.78
2024-07-27 14:25:42,708 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58.9 pTM=0.518 ipTM=0.189 tol=4.19
2024-07-27 14:26:10,043 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.9 pTM=0.52 ipTM=0.178 tol=3.94
2024-07-27 14:26:37,396 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=59 pTM=0.52 ipTM=0.183 tol=2.67
2024-07-27 14:27:04,743 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58.8 pTM=0.518 ipTM=0.181 tol=2.96
2024-07-27 14:27:32,090 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=58.9 pTM=0.521 ipTM=0.193 tol=2.14
2024-07-27 14:27:59,466 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=59 pTM=0.521 ipTM=0.193 tol=1.9
2024-07-27 14:28:26,812 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.9 pTM=0.519 ipTM=0.187 tol=1.79
2024-07-27 14:28:26,813 alphafold2_multimer_v3_model_1_seed_000 took 997.4s (30 recycles)
2024-07-27 14:28:55,195 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=59.6 pTM=0.504 ipTM=0.171
2024-07-27 14:29:22,611 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.2 pTM=0.521 ipTM=0.213 tol=14.5
2024-07-27 14:29:50,052 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=60.4 pTM=0.528 ipTM=0.202 tol=5.59
2024-07-27 14:30:17,517 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=60.5 pTM=0.526 ipTM=0.171 tol=6.32
2024-07-27 14:30:44,956 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.2 pTM=0.525 ipTM=0.168 tol=5.73
2024-07-27 14:31:12,419 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.3 pTM=0.526 ipTM=0.172 tol=5.47
2024-07-27 14:31:39,875 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.5 pTM=0.528 ipTM=0.173 tol=4.82
2024-07-27 14:32:07,322 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.7 pTM=0.528 ipTM=0.172 tol=4.66
2024-07-27 14:32:34,755 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=60.6 pTM=0.531 ipTM=0.174 tol=4.98
2024-07-27 14:33:02,259 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.8 pTM=0.531 ipTM=0.181 tol=3.69
2024-07-27 14:33:29,707 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.8 pTM=0.531 ipTM=0.186 tol=2.03
2024-07-27 14:33:57,140 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.8 pTM=0.531 ipTM=0.183 tol=1.79
2024-07-27 14:34:24,595 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.5 pTM=0.53 ipTM=0.177 tol=2.34
2024-07-27 14:34:52,072 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.6 pTM=0.531 ipTM=0.166 tol=2.21
2024-07-27 14:35:19,502 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.6 pTM=0.531 ipTM=0.192 tol=1.93
2024-07-27 14:35:46,980 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.7 pTM=0.531 ipTM=0.196 tol=2.88
2024-07-27 14:36:14,421 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.8 pTM=0.53 ipTM=0.182 tol=1.89
2024-07-27 14:36:41,881 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.8 pTM=0.533 ipTM=0.181 tol=2.21
2024-07-27 14:37:09,317 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.7 pTM=0.532 ipTM=0.183 tol=2.14
2024-07-27 14:37:36,766 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.5 pTM=0.53 ipTM=0.178 tol=1.58
2024-07-27 14:38:04,222 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=60.6 pTM=0.531 ipTM=0.181 tol=2.27
2024-07-27 14:38:31,672 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.7 pTM=0.532 ipTM=0.183 tol=1.44
2024-07-27 14:38:59,113 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.7 pTM=0.532 ipTM=0.191 tol=1.25
2024-07-27 14:39:26,553 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.7 pTM=0.535 ipTM=0.186 tol=1.71
2024-07-27 14:39:54,019 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.8 pTM=0.531 ipTM=0.189 tol=1.69
2024-07-27 14:40:21,455 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.7 pTM=0.531 ipTM=0.186 tol=1.25
2024-07-27 14:40:48,882 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.7 pTM=0.531 ipTM=0.189 tol=1.83
2024-07-27 14:41:16,333 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.6 pTM=0.531 ipTM=0.185 tol=1.19
2024-07-27 14:41:43,781 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.6 pTM=0.532 ipTM=0.192 tol=2.31
2024-07-27 14:42:11,236 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.5 pTM=0.53 ipTM=0.179 tol=2.23
2024-07-27 14:42:38,694 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.5 pTM=0.53 ipTM=0.183 tol=1.21
2024-07-27 14:42:38,695 alphafold2_multimer_v3_model_2_seed_000 took 851.0s (30 recycles)
2024-07-27 14:43:07,200 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=60.2 pTM=0.566 ipTM=0.544
2024-07-27 14:43:34,752 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=62 pTM=0.56 ipTM=0.415 tol=15.3
2024-07-27 14:44:02,298 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=62.2 pTM=0.561 ipTM=0.491 tol=7.07
2024-07-27 14:44:29,807 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=63.2 pTM=0.581 ipTM=0.527 tol=5.91
2024-07-27 14:44:57,303 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=63 pTM=0.578 ipTM=0.503 tol=3.15
2024-07-27 14:45:24,787 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=62.9 pTM=0.576 ipTM=0.507 tol=4.25
2024-07-27 14:45:52,244 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=63.1 pTM=0.581 ipTM=0.536 tol=2.18
2024-07-27 14:46:19,706 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=63 pTM=0.577 ipTM=0.542 tol=2.01
2024-07-27 14:46:47,180 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=63 pTM=0.577 ipTM=0.554 tol=3.37
2024-07-27 14:47:14,639 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=63.2 pTM=0.583 ipTM=0.579 tol=2.27
2024-07-27 14:47:42,099 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=63.1 pTM=0.582 ipTM=0.588 tol=2.26
2024-07-27 14:48:09,557 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=63.2 pTM=0.582 ipTM=0.582 tol=1.74
2024-07-27 14:48:36,997 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=63.1 pTM=0.583 ipTM=0.582 tol=2.37
2024-07-27 14:49:04,443 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=63.2 pTM=0.582 ipTM=0.578 tol=3.98
2024-07-27 14:49:31,887 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=63.4 pTM=0.586 ipTM=0.598 tol=2.08
2024-07-27 14:49:59,331 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=63.4 pTM=0.585 ipTM=0.59 tol=3.13
2024-07-27 14:50:26,789 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=63.4 pTM=0.584 ipTM=0.593 tol=2.44
2024-07-27 14:50:54,247 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=63.8 pTM=0.589 ipTM=0.618 tol=2.44
2024-07-27 14:51:21,716 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=63.5 pTM=0.587 ipTM=0.602 tol=2.24
2024-07-27 14:51:49,169 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=63.4 pTM=0.586 ipTM=0.588 tol=1.73
2024-07-27 14:52:16,650 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=63.3 pTM=0.583 ipTM=0.584 tol=1.83
2024-07-27 14:52:44,141 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=63.3 pTM=0.582 ipTM=0.583 tol=2.45
2024-07-27 14:53:11,637 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=63.3 pTM=0.585 ipTM=0.587 tol=1.46
2024-07-27 14:53:39,133 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=63.4 pTM=0.586 ipTM=0.597 tol=3.53
2024-07-27 14:54:06,619 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=63.4 pTM=0.586 ipTM=0.6 tol=2.24
2024-07-27 14:54:34,101 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=63.4 pTM=0.586 ipTM=0.599 tol=1.43
2024-07-27 14:55:01,599 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=63.6 pTM=0.588 ipTM=0.609 tol=1.82
2024-07-27 14:55:29,107 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=63.5 pTM=0.587 ipTM=0.611 tol=2.18
2024-07-27 14:55:56,590 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=63.8 pTM=0.594 ipTM=0.623 tol=2.33
2024-07-27 14:56:24,076 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=63.6 pTM=0.59 ipTM=0.62 tol=2.02
2024-07-27 14:56:51,572 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=63.6 pTM=0.588 ipTM=0.611 tol=1.79
2024-07-27 14:56:51,573 alphafold2_multimer_v3_model_3_seed_000 took 852.0s (30 recycles)
2024-07-27 14:57:19,923 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=58.2 pTM=0.535 ipTM=0.255
2024-07-27 14:57:47,428 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=59.7 pTM=0.54 ipTM=0.256 tol=9.34
2024-07-27 14:58:14,932 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=59.6 pTM=0.53 ipTM=0.325 tol=5.88
2024-07-27 14:58:42,417 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=59.2 pTM=0.531 ipTM=0.227 tol=7.07
2024-07-27 14:59:09,910 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=59.5 pTM=0.532 ipTM=0.205 tol=4.63
2024-07-27 14:59:37,395 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=59 pTM=0.531 ipTM=0.185 tol=2.28
2024-07-27 15:00:04,874 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=59.3 pTM=0.529 ipTM=0.185 tol=4.54
2024-07-27 15:00:32,361 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=59.2 pTM=0.528 ipTM=0.229 tol=2.27
2024-07-27 15:00:59,854 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=59.4 pTM=0.53 ipTM=0.208 tol=5.16
2024-07-27 15:01:27,372 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=59.2 pTM=0.531 ipTM=0.197 tol=4.65
2024-07-27 15:01:54,876 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=59.4 pTM=0.53 ipTM=0.2 tol=3.15
2024-07-27 15:02:22,391 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=59.2 pTM=0.526 ipTM=0.216 tol=2.35
2024-07-27 15:02:49,883 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=59.1 pTM=0.527 ipTM=0.203 tol=2.12
2024-07-27 15:03:17,377 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=59.1 pTM=0.529 ipTM=0.2 tol=1.56
2024-07-27 15:03:44,873 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=59.2 pTM=0.532 ipTM=0.205 tol=2.5
2024-07-27 15:04:12,353 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=59.1 pTM=0.533 ipTM=0.234 tol=1.71
2024-07-27 15:04:39,846 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=59.2 pTM=0.531 ipTM=0.212 tol=2.59
2024-07-27 15:05:07,371 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=59.6 pTM=0.531 ipTM=0.215 tol=6.04
2024-07-27 15:05:34,864 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=59.3 pTM=0.534 ipTM=0.209 tol=7.37
2024-07-27 15:06:02,380 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=59.1 pTM=0.536 ipTM=0.211 tol=5.04
2024-07-27 15:06:29,882 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=59.3 pTM=0.536 ipTM=0.241 tol=2.8
2024-07-27 15:06:57,402 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=59.1 pTM=0.531 ipTM=0.198 tol=5.57
2024-07-27 15:07:24,902 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=59.3 pTM=0.535 ipTM=0.204 tol=5.72
2024-07-27 15:07:52,389 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=59.2 pTM=0.534 ipTM=0.232 tol=3.5
2024-07-27 15:08:19,896 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=59.3 pTM=0.541 ipTM=0.196 tol=2.58
2024-07-27 15:08:47,417 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=59.4 pTM=0.539 ipTM=0.177 tol=2.51
2024-07-27 15:09:14,930 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=59.4 pTM=0.541 ipTM=0.215 tol=3.21
2024-07-27 15:09:42,455 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=59.3 pTM=0.542 ipTM=0.229 tol=2.71
2024-07-27 15:10:09,956 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=59.4 pTM=0.543 ipTM=0.216 tol=6.62
2024-07-27 15:10:37,449 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=59.3 pTM=0.545 ipTM=0.227 tol=7.17
2024-07-27 15:11:04,973 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=59.5 pTM=0.544 ipTM=0.21 tol=3.61
2024-07-27 15:11:04,974 alphafold2_multimer_v3_model_4_seed_000 took 852.5s (30 recycles)
2024-07-27 15:11:33,505 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=59.8 pTM=0.52 ipTM=0.204
2024-07-27 15:12:01,140 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59.6 pTM=0.538 ipTM=0.215 tol=17.7
2024-07-27 15:12:28,663 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.3 pTM=0.56 ipTM=0.554 tol=14.4
2024-07-27 15:12:56,204 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=62.3 pTM=0.577 ipTM=0.543 tol=7.39
2024-07-27 15:13:23,737 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=62.4 pTM=0.577 ipTM=0.559 tol=4.36
2024-07-27 15:13:51,267 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.4 pTM=0.578 ipTM=0.536 tol=3.93
2024-07-27 15:14:18,786 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=62.6 pTM=0.581 ipTM=0.547 tol=2.84
2024-07-27 15:14:46,301 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=62.8 pTM=0.581 ipTM=0.558 tol=2.66
2024-07-27 15:15:13,818 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=62.8 pTM=0.581 ipTM=0.545 tol=2.6
2024-07-27 15:15:41,328 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.9 pTM=0.585 ipTM=0.578 tol=1.69
2024-07-27 15:16:08,860 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=63 pTM=0.586 ipTM=0.578 tol=1.93
2024-07-27 15:16:36,377 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.8 pTM=0.58 ipTM=0.546 tol=3.2
2024-07-27 15:17:03,906 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62.7 pTM=0.58 ipTM=0.547 tol=2.44
2024-07-27 15:17:31,437 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.7 pTM=0.583 ipTM=0.544 tol=0.777
2024-07-27 15:17:58,967 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.8 pTM=0.581 ipTM=0.54 tol=2.27
2024-07-27 15:18:26,489 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.6 pTM=0.578 ipTM=0.517 tol=0.88
2024-07-27 15:18:54,010 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.5 pTM=0.576 ipTM=0.516 tol=2.18
2024-07-27 15:19:21,536 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.7 pTM=0.58 ipTM=0.54 tol=1.51
2024-07-27 15:19:49,076 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.5 pTM=0.578 ipTM=0.523 tol=3.93
2024-07-27 15:20:16,617 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.2 pTM=0.573 ipTM=0.473 tol=3.53
2024-07-27 15:20:44,171 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.1 pTM=0.567 ipTM=0.441 tol=3.38
2024-07-27 15:21:11,707 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=61.9 pTM=0.564 ipTM=0.439 tol=2.41
2024-07-27 15:21:39,248 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=61.7 pTM=0.567 ipTM=0.443 tol=6.82
2024-07-27 15:22:06,781 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62.1 pTM=0.568 ipTM=0.462 tol=4.96
2024-07-27 15:22:34,318 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=62.1 pTM=0.57 ipTM=0.475 tol=5.19
2024-07-27 15:23:01,844 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62 pTM=0.567 ipTM=0.464 tol=2.81
2024-07-27 15:23:29,366 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.1 pTM=0.568 ipTM=0.478 tol=1.91
2024-07-27 15:23:56,906 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.2 pTM=0.573 ipTM=0.513 tol=2.37
2024-07-27 15:24:24,480 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.4 pTM=0.576 ipTM=0.516 tol=1.41
2024-07-27 15:24:52,043 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.4 pTM=0.576 ipTM=0.521 tol=1.02
2024-07-27 15:25:19,558 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.5 pTM=0.577 ipTM=0.517 tol=0.958
2024-07-27 15:25:19,559 alphafold2_multimer_v3_model_5_seed_000 took 853.7s (30 recycles)
2024-07-27 15:25:20,459 reranking models by 'multimer' metric
2024-07-27 15:25:21,814 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 15:27:20,059 Relaxation took 119.6s
2024-07-27 15:27:20,059 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=63.6 pTM=0.588 ipTM=0.611
2024-07-27 15:29:21,206 Relaxation took 121.1s
2024-07-27 15:29:21,206 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.5 pTM=0.577 ipTM=0.517
2024-07-27 15:33:11,404 Relaxation took 230.2s
2024-07-27 15:33:11,404 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=59.5 pTM=0.544 ipTM=0.21
2024-07-27 15:36:57,858 Relaxation took 226.5s
2024-07-27 15:36:57,858 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.9 pTM=0.519 ipTM=0.187
2024-07-27 16:02:33,889 Relaxation took 1536.0s
2024-07-27 16:02:33,889 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.5 pTM=0.53 ipTM=0.183
2024-07-27 16:02:36,391 Done