2024-07-27 14:21:44,133 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 14:21:44,448 Running on GPU
2024-07-27 14:21:47,993 Found 6 citations for tools or databases
2024-07-27 14:21:47,993 Query 1/1: SOX9_TULP4 (length 2052)
2024-07-27 14:21:48,456 Sleeping for 9s. Reason: PENDING
2024-07-27 14:21:57,889 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:22:04,300 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:22:11,728 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:22:20,152 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:22:25,552 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:22:30,975 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:22:40,392 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:22:49,825 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:22:56,265 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:23:04,711 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:23:11,117 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:23:18,541 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:23:24,951 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:23:34,383 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:23:39,806 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:23:48,232 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:23:56,675 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:24:04,104 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:24:14,525 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:24:21,941 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:24:31,386 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:24:36,802 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:24:47,225 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:24:57,639 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:25:08,075 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:25:20,198 Sleeping for 7s. Reason: PENDING
2024-07-27 14:25:27,620 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:25:35,042 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:25:44,473 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:25:49,910 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:25:56,340 Sleeping for 7s. Reason: RUNNING
2024-07-27 14:26:03,766 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:26:13,201 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:26:23,625 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:26:34,049 Sleeping for 10s. Reason: RUNNING
2024-07-27 14:26:44,535 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:26:49,952 Sleeping for 5s. Reason: RUNNING
2024-07-27 14:26:55,381 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:27:03,817 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:27:10,241 Sleeping for 9s. Reason: RUNNING
2024-07-27 14:27:19,676 Sleeping for 6s. Reason: RUNNING
2024-07-27 14:27:26,094 Sleeping for 8s. Reason: RUNNING
2024-07-27 14:27:38,778 Setting max_seq=508, max_extra_seq=2048
2024-07-27 14:33:14,158 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=35.8 pTM=0.412 ipTM=0.222
2024-07-27 14:36:01,746 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=38.5 pTM=0.429 ipTM=0.22 tol=24.2
2024-07-27 14:38:49,407 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=38.6 pTM=0.422 ipTM=0.244 tol=12.5
2024-07-27 14:41:37,137 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=38.9 pTM=0.42 ipTM=0.217 tol=8.4
2024-07-27 14:44:24,917 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=39.1 pTM=0.421 ipTM=0.234 tol=11.9
2024-07-27 14:47:12,668 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=39.1 pTM=0.422 ipTM=0.212 tol=7.91
2024-07-27 14:50:00,484 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=39.1 pTM=0.421 ipTM=0.229 tol=7.18
2024-07-27 14:52:48,278 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=39.3 pTM=0.423 ipTM=0.242 tol=5.78
2024-07-27 14:55:36,084 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=39.3 pTM=0.422 ipTM=0.232 tol=6.74
2024-07-27 14:58:23,968 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=39.3 pTM=0.422 ipTM=0.22 tol=5.79
2024-07-27 15:01:11,808 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=39.3 pTM=0.421 ipTM=0.214 tol=6.52
2024-07-27 15:03:59,590 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=39.4 pTM=0.423 ipTM=0.231 tol=5.96
2024-07-27 15:06:47,414 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=39.4 pTM=0.424 ipTM=0.236 tol=5.85
2024-07-27 15:09:35,268 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=39.2 pTM=0.422 ipTM=0.23 tol=5.66
2024-07-27 15:12:23,155 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=39.3 pTM=0.422 ipTM=0.216 tol=6.33
2024-07-27 15:15:10,999 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=39.3 pTM=0.421 ipTM=0.216 tol=5.35
2024-07-27 15:17:58,853 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=39.3 pTM=0.423 ipTM=0.214 tol=7.25
2024-07-27 15:20:46,705 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=39.3 pTM=0.422 ipTM=0.238 tol=7.36
2024-07-27 15:23:34,548 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=39.2 pTM=0.422 ipTM=0.224 tol=7.73
2024-07-27 15:26:22,351 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=39.2 pTM=0.423 ipTM=0.216 tol=8.95
2024-07-27 15:29:10,174 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=39.2 pTM=0.423 ipTM=0.214 tol=6.7
2024-07-27 15:31:58,005 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=39.3 pTM=0.422 ipTM=0.216 tol=10
2024-07-27 15:34:45,755 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=39.2 pTM=0.422 ipTM=0.231 tol=7.44
2024-07-27 15:37:33,471 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=39.2 pTM=0.422 ipTM=0.226 tol=8.19
2024-07-27 15:40:21,186 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=39.1 pTM=0.423 ipTM=0.231 tol=6.43
2024-07-27 15:43:08,929 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=39.2 pTM=0.422 ipTM=0.224 tol=9.7
2024-07-27 15:45:56,687 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=39.2 pTM=0.423 ipTM=0.22 tol=12.4
2024-07-27 15:48:44,452 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=39.2 pTM=0.422 ipTM=0.223 tol=10.2
2024-07-27 15:51:32,300 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=39.2 pTM=0.422 ipTM=0.221 tol=7.35
2024-07-27 15:54:20,128 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=39.2 pTM=0.422 ipTM=0.218 tol=7.85
2024-07-27 15:57:07,954 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=39.2 pTM=0.422 ipTM=0.221 tol=9.02
2024-07-27 15:57:07,957 alphafold2_multimer_v3_model_1_seed_000 took 5364.0s (30 recycles)
2024-07-27 15:59:58,361 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=37.7 pTM=0.425 ipTM=0.211
2024-07-27 16:02:46,510 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=39.2 pTM=0.427 ipTM=0.214 tol=18.5
2024-07-27 16:05:34,665 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=39.8 pTM=0.432 ipTM=0.219 tol=13
2024-07-27 16:08:22,808 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=40 pTM=0.431 ipTM=0.218 tol=11
2024-07-27 16:11:10,940 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=40.2 pTM=0.432 ipTM=0.224 tol=7.37
2024-07-27 16:13:59,148 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=40.2 pTM=0.433 ipTM=0.223 tol=8.62
2024-07-27 16:16:47,328 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=40.3 pTM=0.431 ipTM=0.221 tol=6.42
2024-07-27 16:19:35,553 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=40.4 pTM=0.432 ipTM=0.22 tol=5.4
2024-07-27 16:22:23,809 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=40.4 pTM=0.432 ipTM=0.223 tol=4.89
2024-07-27 16:25:12,010 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=40.3 pTM=0.433 ipTM=0.221 tol=5.39
2024-07-27 16:28:00,223 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=40.3 pTM=0.432 ipTM=0.22 tol=6.16
2024-07-27 16:30:48,416 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=40.5 pTM=0.433 ipTM=0.226 tol=4.85
2024-07-27 16:33:36,622 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=40.3 pTM=0.433 ipTM=0.223 tol=5.15
2024-07-27 16:36:24,865 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=40.3 pTM=0.432 ipTM=0.225 tol=4.23
2024-07-27 16:39:13,132 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=40.3 pTM=0.432 ipTM=0.219 tol=4.59
2024-07-27 16:42:01,348 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=40.4 pTM=0.432 ipTM=0.218 tol=4.2
2024-07-27 16:44:49,582 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=40.4 pTM=0.432 ipTM=0.22 tol=3.21
2024-07-27 16:47:37,806 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=40.4 pTM=0.431 ipTM=0.219 tol=4.41
2024-07-27 16:50:26,024 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=40.2 pTM=0.431 ipTM=0.226 tol=3.91
2024-07-27 16:53:14,251 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=40.3 pTM=0.432 ipTM=0.222 tol=3.62
2024-07-27 16:56:02,466 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=40.2 pTM=0.432 ipTM=0.22 tol=3.54
2024-07-27 16:58:50,695 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=40.4 pTM=0.431 ipTM=0.227 tol=5.47
2024-07-27 17:01:38,934 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=40.3 pTM=0.431 ipTM=0.218 tol=6.62
2024-07-27 17:04:27,151 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=40.3 pTM=0.431 ipTM=0.217 tol=6.25
2024-07-27 17:07:15,363 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=40.3 pTM=0.432 ipTM=0.222 tol=5.66
2024-07-27 17:10:03,582 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=40.3 pTM=0.431 ipTM=0.219 tol=6.14
2024-07-27 17:12:51,815 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=40.3 pTM=0.431 ipTM=0.221 tol=8.16
2024-07-27 17:15:40,042 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=40.4 pTM=0.432 ipTM=0.219 tol=5.62
2024-07-27 17:18:28,289 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=40.4 pTM=0.433 ipTM=0.22 tol=5.57
2024-07-27 17:21:16,522 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=40.5 pTM=0.433 ipTM=0.22 tol=4.78
2024-07-27 17:24:04,807 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=40.3 pTM=0.434 ipTM=0.219 tol=4.49
2024-07-27 17:24:04,809 alphafold2_multimer_v3_model_2_seed_000 took 5214.4s (30 recycles)
2024-07-27 17:26:56,005 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=36.4 pTM=0.407 ipTM=0.199
2024-07-27 17:29:44,687 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=37.3 pTM=0.415 ipTM=0.243 tol=26
2024-07-27 17:32:33,383 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=39.1 pTM=0.425 ipTM=0.22 tol=19.2
2024-07-27 17:35:22,174 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=39.4 pTM=0.423 ipTM=0.223 tol=10.5
2024-07-27 17:38:10,989 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=39.4 pTM=0.422 ipTM=0.223 tol=9.52
2024-07-27 17:40:59,678 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=39.4 pTM=0.423 ipTM=0.227 tol=7.88
2024-07-27 17:43:48,509 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=39.3 pTM=0.421 ipTM=0.207 tol=7.33
2024-07-27 17:46:37,280 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=39.5 pTM=0.423 ipTM=0.214 tol=6.87
2024-07-27 17:49:26,076 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=39.5 pTM=0.421 ipTM=0.209 tol=5.97
2024-07-27 17:52:14,820 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=39.5 pTM=0.42 ipTM=0.204 tol=7.42
2024-07-27 17:55:03,616 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=39.5 pTM=0.422 ipTM=0.237 tol=6
2024-07-27 17:57:52,371 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=39.4 pTM=0.421 ipTM=0.232 tol=5.59
2024-07-27 18:00:41,109 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=39.5 pTM=0.423 ipTM=0.21 tol=5.48
2024-07-27 18:03:29,865 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=39.4 pTM=0.421 ipTM=0.212 tol=5.16
2024-07-27 18:06:18,658 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=39.6 pTM=0.423 ipTM=0.208 tol=4.4
2024-07-27 18:09:07,448 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=39.5 pTM=0.421 ipTM=0.209 tol=4.83
2024-07-27 18:11:56,239 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=39.6 pTM=0.423 ipTM=0.214 tol=5.25
2024-07-27 18:14:45,144 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=39.6 pTM=0.422 ipTM=0.211 tol=6.32
2024-07-27 18:17:33,988 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=39.6 pTM=0.423 ipTM=0.219 tol=6.42
2024-07-27 18:20:22,818 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=39.6 pTM=0.424 ipTM=0.216 tol=6.42
2024-07-27 18:23:11,664 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=39.5 pTM=0.422 ipTM=0.211 tol=5.94
2024-07-27 18:26:00,504 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=39.6 pTM=0.422 ipTM=0.204 tol=7.18
2024-07-27 18:28:49,324 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=39.5 pTM=0.422 ipTM=0.209 tol=5.72
2024-07-27 18:31:38,152 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=39.6 pTM=0.423 ipTM=0.211 tol=5.21
2024-07-27 18:34:26,975 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=39.5 pTM=0.422 ipTM=0.207 tol=6.73
2024-07-27 18:37:15,812 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=39.5 pTM=0.423 ipTM=0.224 tol=4.12
2024-07-27 18:40:04,604 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=39.5 pTM=0.423 ipTM=0.208 tol=4.26
2024-07-27 18:42:53,403 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=39.5 pTM=0.422 ipTM=0.212 tol=5.43
2024-07-27 18:45:42,195 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=39.5 pTM=0.423 ipTM=0.213 tol=4.48
2024-07-27 18:48:30,952 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=39.4 pTM=0.422 ipTM=0.213 tol=4.46
2024-07-27 18:51:19,764 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=39.6 pTM=0.422 ipTM=0.223 tol=4.65
2024-07-27 18:51:19,767 alphafold2_multimer_v3_model_3_seed_000 took 5232.5s (30 recycles)
2024-07-27 18:54:11,174 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=36.5 pTM=0.414 ipTM=0.24
2024-07-27 18:57:00,071 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=37.8 pTM=0.42 ipTM=0.308 tol=21.7
2024-07-27 18:59:49,095 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=38.2 pTM=0.415 ipTM=0.209 tol=13.5
2024-07-27 19:02:38,131 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=38.2 pTM=0.413 ipTM=0.201 tol=16.7
2024-07-27 19:05:27,158 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=38.4 pTM=0.415 ipTM=0.216 tol=13.6
2024-07-27 19:08:16,040 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=38.5 pTM=0.417 ipTM=0.215 tol=9.59
2024-07-27 19:11:05,045 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=38.5 pTM=0.417 ipTM=0.274 tol=8.94
2024-07-27 19:13:54,020 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=38.4 pTM=0.417 ipTM=0.228 tol=7.47
2024-07-27 19:16:43,072 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=38.5 pTM=0.418 ipTM=0.223 tol=6.67
2024-07-27 19:19:32,118 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=38.5 pTM=0.416 ipTM=0.199 tol=8.2
2024-07-27 19:22:21,232 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=38.4 pTM=0.417 ipTM=0.213 tol=6.81
2024-07-27 19:25:10,272 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=38.4 pTM=0.418 ipTM=0.211 tol=8.34
2024-07-27 19:27:59,270 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=38.6 pTM=0.418 ipTM=0.221 tol=8.54
2024-07-27 19:30:48,292 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=38.3 pTM=0.416 ipTM=0.199 tol=5.27
2024-07-27 19:33:37,307 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=38.6 pTM=0.417 ipTM=0.214 tol=5.79
2024-07-27 19:36:26,327 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=38.3 pTM=0.416 ipTM=0.198 tol=6.28
2024-07-27 19:39:15,351 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=38.5 pTM=0.416 ipTM=0.195 tol=7.07
2024-07-27 19:42:04,322 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=38.4 pTM=0.416 ipTM=0.204 tol=6.72
2024-07-27 19:44:53,347 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=38.4 pTM=0.417 ipTM=0.217 tol=6.42
2024-07-27 19:47:42,251 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=38.3 pTM=0.416 ipTM=0.205 tol=6.27
2024-07-27 19:50:31,244 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=38.5 pTM=0.417 ipTM=0.217 tol=6.64
2024-07-27 19:53:20,340 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=38.4 pTM=0.415 ipTM=0.209 tol=5.6
2024-07-27 19:56:09,260 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=38.5 pTM=0.417 ipTM=0.222 tol=6.7
2024-07-27 19:58:58,231 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=38.4 pTM=0.416 ipTM=0.208 tol=6.11
2024-07-27 20:01:47,225 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=38.5 pTM=0.419 ipTM=0.281 tol=8.25
2024-07-27 20:04:36,193 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=38.4 pTM=0.417 ipTM=0.212 tol=5.27
2024-07-27 20:07:25,146 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=38.5 pTM=0.417 ipTM=0.226 tol=5.37
2024-07-27 20:10:14,170 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=38.5 pTM=0.417 ipTM=0.207 tol=6.62
2024-07-27 20:13:03,035 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=38.6 pTM=0.42 ipTM=0.271 tol=5.93
2024-07-27 20:15:51,964 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=38.4 pTM=0.417 ipTM=0.216 tol=5.62
2024-07-27 20:18:40,869 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=38.6 pTM=0.418 ipTM=0.222 tol=6.09
2024-07-27 20:18:40,871 alphafold2_multimer_v3_model_4_seed_000 took 5238.7s (30 recycles)
2024-07-27 20:21:32,121 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=36.4 pTM=0.414 ipTM=0.242
2024-07-27 20:24:21,003 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=38.2 pTM=0.422 ipTM=0.201 tol=24.2
2024-07-27 20:27:09,846 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=39 pTM=0.427 ipTM=0.239 tol=16
2024-07-27 20:29:58,762 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=39.1 pTM=0.425 ipTM=0.207 tol=14.4
2024-07-27 20:32:47,689 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=39.1 pTM=0.424 ipTM=0.203 tol=11.4
2024-07-27 20:35:36,622 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=39.7 pTM=0.429 ipTM=0.204 tol=8.12
2024-07-27 20:38:25,493 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=39.7 pTM=0.428 ipTM=0.2 tol=8.25
2024-07-27 20:41:14,404 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=39.8 pTM=0.429 ipTM=0.208 tol=13.7
2024-07-27 20:44:03,336 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=40 pTM=0.428 ipTM=0.203 tol=17.2
2024-07-27 20:46:52,225 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=40 pTM=0.429 ipTM=0.216 tol=12.6
2024-07-27 20:49:41,145 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=39.9 pTM=0.429 ipTM=0.213 tol=12.8
2024-07-27 20:52:30,119 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=39.9 pTM=0.43 ipTM=0.218 tol=13.6
2024-07-27 20:55:19,002 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=39.9 pTM=0.429 ipTM=0.214 tol=10.6
2024-07-27 20:58:07,960 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=39.8 pTM=0.431 ipTM=0.229 tol=9.76
2024-07-27 21:00:56,962 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=39.9 pTM=0.429 ipTM=0.22 tol=15.3
2024-07-27 21:03:45,959 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=39.9 pTM=0.429 ipTM=0.22 tol=9.9
2024-07-27 21:06:34,962 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=40 pTM=0.43 ipTM=0.24 tol=14.2
2024-07-27 21:09:23,939 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=39.9 pTM=0.429 ipTM=0.232 tol=13.8
2024-07-27 21:12:12,957 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=39.8 pTM=0.428 ipTM=0.227 tol=11
2024-07-27 21:15:01,975 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=39.7 pTM=0.428 ipTM=0.206 tol=17.4
2024-07-27 21:17:50,963 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=39.9 pTM=0.429 ipTM=0.21 tol=14.5
2024-07-27 21:20:39,986 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=39.8 pTM=0.43 ipTM=0.232 tol=11.4
2024-07-27 21:23:28,971 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=39.9 pTM=0.428 ipTM=0.212 tol=9.69
2024-07-27 21:26:17,920 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=39.8 pTM=0.428 ipTM=0.221 tol=10.2
2024-07-27 21:29:06,862 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=39.7 pTM=0.428 ipTM=0.224 tol=10.3
2024-07-27 21:31:55,692 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=39.7 pTM=0.428 ipTM=0.227 tol=10.6
2024-07-27 21:34:44,605 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=39.8 pTM=0.429 ipTM=0.24 tol=11
2024-07-27 21:37:33,515 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=39.8 pTM=0.428 ipTM=0.216 tol=10.1
2024-07-27 21:40:22,403 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=39.8 pTM=0.43 ipTM=0.214 tol=14.4
2024-07-27 21:43:11,297 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=39.8 pTM=0.428 ipTM=0.216 tol=10.5
2024-07-27 21:46:00,186 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=39.8 pTM=0.428 ipTM=0.211 tol=10.8
2024-07-27 21:46:00,188 alphafold2_multimer_v3_model_5_seed_000 took 5236.9s (30 recycles)
2024-07-27 21:46:02,623 reranking models by 'multimer' metric
2024-07-27 21:46:06,683 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 21:55:15,566 Relaxation took 552.9s
2024-07-27 21:55:15,566 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=39.6 pTM=0.422 ipTM=0.223
2024-07-27 22:00:06,324 Relaxation took 290.8s
2024-07-27 22:00:06,324 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=40.3 pTM=0.434 ipTM=0.219
2024-07-27 22:09:33,344 Relaxation took 567.0s
2024-07-27 22:09:33,345 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=38.6 pTM=0.418 ipTM=0.222
2024-07-27 22:16:29,475 Relaxation took 416.1s
2024-07-27 22:16:29,475 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=39.2 pTM=0.422 ipTM=0.221
2024-07-27 22:24:34,391 Relaxation took 484.9s
2024-07-27 22:24:34,392 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=39.8 pTM=0.428 ipTM=0.211
2024-07-27 22:24:39,766 Done