2024-07-27 16:12:18,302 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-27 16:12:18,620 Running on GPU
2024-07-27 16:12:22,229 Found 6 citations for tools or databases
2024-07-27 16:12:22,229 Query 1/1: TCEAL8_KBTBD13 (length 576)
2024-07-27 16:12:22,687 Sleeping for 9s. Reason: PENDING
2024-07-27 16:12:32,096 Sleeping for 8s. Reason: RUNNING
2024-07-27 16:12:40,516 Sleeping for 10s. Reason: RUNNING
2024-07-27 16:12:50,937 Sleeping for 10s. Reason: RUNNING
2024-07-27 16:13:01,354 Sleeping for 7s. Reason: RUNNING
2024-07-27 16:13:08,759 Sleeping for 10s. Reason: RUNNING
2024-07-27 16:13:19,170 Sleeping for 9s. Reason: RUNNING
2024-07-27 16:13:28,586 Sleeping for 8s. Reason: RUNNING
2024-07-27 16:13:37,008 Sleeping for 8s. Reason: RUNNING
2024-07-27 16:13:46,903 Sleeping for 9s. Reason: PENDING
2024-07-27 16:13:56,337 Sleeping for 9s. Reason: RUNNING
2024-07-27 16:14:05,794 Sleeping for 10s. Reason: RUNNING
2024-07-27 16:14:16,209 Sleeping for 9s. Reason: RUNNING
2024-07-27 16:14:25,625 Sleeping for 9s. Reason: RUNNING
2024-07-27 16:14:36,469 Setting max_seq=508, max_extra_seq=2048
2024-07-27 16:16:55,154 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.1 pTM=0.758 ipTM=0.259
2024-07-27 16:17:01,720 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.1 pTM=0.769 ipTM=0.305 tol=4.59
2024-07-27 16:17:08,374 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.9 pTM=0.768 ipTM=0.349 tol=17.9
2024-07-27 16:17:14,968 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.9 pTM=0.78 ipTM=0.497 tol=5.48
2024-07-27 16:17:21,578 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.4 pTM=0.79 ipTM=0.549 tol=9.04
2024-07-27 16:17:28,215 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.5 pTM=0.789 ipTM=0.568 tol=2.73
2024-07-27 16:17:34,833 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.1 pTM=0.793 ipTM=0.607 tol=1.16
2024-07-27 16:17:41,446 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=78.9 pTM=0.792 ipTM=0.6 tol=2.37
2024-07-27 16:17:48,104 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79 pTM=0.792 ipTM=0.604 tol=1.77
2024-07-27 16:17:54,721 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79 pTM=0.792 ipTM=0.61 tol=1.03
2024-07-27 16:18:01,339 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=78.9 pTM=0.791 ipTM=0.607 tol=1.63
2024-07-27 16:18:08,016 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=79 pTM=0.792 ipTM=0.603 tol=1.22
2024-07-27 16:18:14,652 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=79.1 pTM=0.793 ipTM=0.624 tol=2.07
2024-07-27 16:18:21,262 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=78.8 pTM=0.791 ipTM=0.597 tol=2.04
2024-07-27 16:18:27,892 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=79 pTM=0.793 ipTM=0.616 tol=1.22
2024-07-27 16:18:34,521 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=79.1 pTM=0.793 ipTM=0.617 tol=1.84
2024-07-27 16:18:41,131 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=78.9 pTM=0.792 ipTM=0.618 tol=1.6
2024-07-27 16:18:47,750 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=79 pTM=0.793 ipTM=0.62 tol=1.14
2024-07-27 16:18:54,366 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=79 pTM=0.792 ipTM=0.618 tol=1.17
2024-07-27 16:19:00,996 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=79 pTM=0.792 ipTM=0.613 tol=1.17
2024-07-27 16:19:07,670 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=78.9 pTM=0.792 ipTM=0.622 tol=0.542
2024-07-27 16:19:14,296 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=78.8 pTM=0.791 ipTM=0.594 tol=0.631
2024-07-27 16:19:20,932 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=78.9 pTM=0.792 ipTM=0.603 tol=1.26
2024-07-27 16:19:27,600 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=78.9 pTM=0.791 ipTM=0.608 tol=1.13
2024-07-27 16:19:34,237 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=78.9 pTM=0.792 ipTM=0.621 tol=0.45
2024-07-27 16:19:34,238 alphafold2_multimer_v3_model_1_seed_000 took 292.9s (24 recycles)
2024-07-27 16:19:41,063 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.3 pTM=0.753 ipTM=0.193
2024-07-27 16:19:47,729 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.4 pTM=0.794 ipTM=0.694 tol=17.2
2024-07-27 16:19:54,362 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.9 pTM=0.785 ipTM=0.541 tol=5.89
2024-07-27 16:20:01,003 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.1 pTM=0.787 ipTM=0.572 tol=1.52
2024-07-27 16:20:07,678 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.4 pTM=0.788 ipTM=0.549 tol=0.969
2024-07-27 16:20:14,289 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77.7 pTM=0.782 ipTM=0.544 tol=0.752
2024-07-27 16:20:20,914 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.2 pTM=0.785 ipTM=0.552 tol=0.493
2024-07-27 16:20:20,914 alphafold2_multimer_v3_model_2_seed_000 took 46.5s (6 recycles)
2024-07-27 16:20:27,713 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.6 pTM=0.749 ipTM=0.242
2024-07-27 16:20:34,382 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.4 pTM=0.795 ipTM=0.71 tol=14.2
2024-07-27 16:20:41,071 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.3 pTM=0.795 ipTM=0.673 tol=7.03
2024-07-27 16:20:47,755 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.5 pTM=0.793 ipTM=0.708 tol=1.36
2024-07-27 16:20:54,430 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.8 pTM=0.795 ipTM=0.714 tol=1.08
2024-07-27 16:21:01,134 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.8 pTM=0.793 ipTM=0.704 tol=0.443
2024-07-27 16:21:01,135 alphafold2_multimer_v3_model_3_seed_000 took 40.0s (5 recycles)
2024-07-27 16:21:07,995 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.1 pTM=0.762 ipTM=0.237
2024-07-27 16:21:14,722 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.1 pTM=0.8 ipTM=0.767 tol=4.62
2024-07-27 16:21:21,473 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.4 pTM=0.793 ipTM=0.733 tol=3.63
2024-07-27 16:21:28,178 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.8 pTM=0.796 ipTM=0.72 tol=3.9
2024-07-27 16:21:34,882 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.5 pTM=0.794 ipTM=0.717 tol=1.47
2024-07-27 16:21:41,627 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.5 pTM=0.795 ipTM=0.721 tol=5.93
2024-07-27 16:21:48,316 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.3 pTM=0.793 ipTM=0.704 tol=1.69
2024-07-27 16:21:55,013 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.5 pTM=0.793 ipTM=0.704 tol=5.48
2024-07-27 16:22:01,713 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.6 pTM=0.793 ipTM=0.693 tol=3.75
2024-07-27 16:22:08,416 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.8 pTM=0.796 ipTM=0.72 tol=5.21
2024-07-27 16:22:15,151 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.4 pTM=0.793 ipTM=0.698 tol=1.91
2024-07-27 16:22:21,875 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.2 pTM=0.791 ipTM=0.7 tol=6.9
2024-07-27 16:22:28,585 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.5 pTM=0.793 ipTM=0.69 tol=4.73
2024-07-27 16:22:35,310 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79 pTM=0.791 ipTM=0.687 tol=5.49
2024-07-27 16:22:42,043 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.3 pTM=0.792 ipTM=0.698 tol=1.79
2024-07-27 16:22:48,756 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.5 pTM=0.792 ipTM=0.707 tol=6.43
2024-07-27 16:22:55,442 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79 pTM=0.79 ipTM=0.682 tol=3.33
2024-07-27 16:23:02,138 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.4 pTM=0.793 ipTM=0.714 tol=5.17
2024-07-27 16:23:08,826 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.2 pTM=0.791 ipTM=0.711 tol=2.34
2024-07-27 16:23:15,527 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.2 pTM=0.791 ipTM=0.708 tol=7.44
2024-07-27 16:23:22,206 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79 pTM=0.789 ipTM=0.692 tol=5.18
2024-07-27 16:23:28,931 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=79.1 pTM=0.792 ipTM=0.705 tol=5.53
2024-07-27 16:23:35,682 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=79.1 pTM=0.79 ipTM=0.694 tol=1.48
2024-07-27 16:23:42,437 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=79.4 pTM=0.791 ipTM=0.707 tol=6.14
2024-07-27 16:23:49,165 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=79.1 pTM=0.79 ipTM=0.693 tol=4.18
2024-07-27 16:23:55,877 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=79.2 pTM=0.792 ipTM=0.713 tol=5.39
2024-07-27 16:24:02,627 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79.1 pTM=0.791 ipTM=0.706 tol=1.96
2024-07-27 16:24:09,370 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=78.8 pTM=0.788 ipTM=0.695 tol=1.72
2024-07-27 16:24:16,124 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=79.1 pTM=0.79 ipTM=0.697 tol=5.67
2024-07-27 16:24:22,867 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=79.2 pTM=0.791 ipTM=0.696 tol=2.35
2024-07-27 16:24:29,610 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=79.1 pTM=0.79 ipTM=0.685 tol=2.62
2024-07-27 16:24:29,611 alphafold2_multimer_v3_model_4_seed_000 took 208.3s (30 recycles)
2024-07-27 16:24:36,534 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74 pTM=0.766 ipTM=0.287
2024-07-27 16:24:43,303 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.7 pTM=0.804 ipTM=0.801 tol=9.89
2024-07-27 16:24:50,041 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.7 pTM=0.801 ipTM=0.752 tol=7.27
2024-07-27 16:24:56,767 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.6 pTM=0.797 ipTM=0.772 tol=4.96
2024-07-27 16:25:03,492 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.8 pTM=0.797 ipTM=0.772 tol=6.06
2024-07-27 16:25:10,232 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.9 pTM=0.797 ipTM=0.776 tol=1.77
2024-07-27 16:25:16,959 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.8 pTM=0.796 ipTM=0.773 tol=1.75
2024-07-27 16:25:23,725 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80 pTM=0.799 ipTM=0.783 tol=1.52
2024-07-27 16:25:30,471 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.8 pTM=0.796 ipTM=0.776 tol=7.65
2024-07-27 16:25:37,231 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.1 pTM=0.798 ipTM=0.776 tol=8.7
2024-07-27 16:25:43,990 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.8 pTM=0.797 ipTM=0.778 tol=1.11
2024-07-27 16:25:50,735 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.9 pTM=0.798 ipTM=0.784 tol=3.17
2024-07-27 16:25:57,495 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.9 pTM=0.797 ipTM=0.784 tol=4.32
2024-07-27 16:26:04,252 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.9 pTM=0.797 ipTM=0.779 tol=4.84
2024-07-27 16:26:11,000 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.1 pTM=0.798 ipTM=0.783 tol=1.26
2024-07-27 16:26:17,730 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.2 pTM=0.799 ipTM=0.785 tol=2.38
2024-07-27 16:26:24,479 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.9 pTM=0.796 ipTM=0.776 tol=6.21
2024-07-27 16:26:31,231 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80.1 pTM=0.798 ipTM=0.78 tol=5.24
2024-07-27 16:26:37,987 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.9 pTM=0.797 ipTM=0.782 tol=2.87
2024-07-27 16:26:44,721 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=80.1 pTM=0.798 ipTM=0.78 tol=2.99
2024-07-27 16:26:51,471 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80 pTM=0.798 ipTM=0.776 tol=3.74
2024-07-27 16:26:58,231 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80 pTM=0.797 ipTM=0.776 tol=3.4
2024-07-27 16:27:04,995 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.9 pTM=0.798 ipTM=0.775 tol=5.74
2024-07-27 16:27:11,735 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=80.1 pTM=0.799 ipTM=0.783 tol=5.11
2024-07-27 16:27:18,476 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=79.8 pTM=0.798 ipTM=0.778 tol=2.38
2024-07-27 16:27:25,209 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.8 pTM=0.797 ipTM=0.776 tol=3.67
2024-07-27 16:27:31,919 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=79.9 pTM=0.798 ipTM=0.776 tol=3.07
2024-07-27 16:27:38,603 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.9 pTM=0.797 ipTM=0.781 tol=3.35
2024-07-27 16:27:45,284 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.9 pTM=0.799 ipTM=0.781 tol=3.73
2024-07-27 16:27:51,965 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.9 pTM=0.797 ipTM=0.78 tol=4.38
2024-07-27 16:27:58,647 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=79.9 pTM=0.798 ipTM=0.777 tol=1.61
2024-07-27 16:27:58,648 alphafold2_multimer_v3_model_5_seed_000 took 208.8s (30 recycles)
2024-07-27 16:27:58,863 reranking models by 'multimer' metric
2024-07-27 16:28:01,385 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 16:28:18,740 Relaxation took 19.9s
2024-07-27 16:28:18,740 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.9 pTM=0.798 ipTM=0.777
2024-07-27 16:28:45,250 Relaxation took 26.5s
2024-07-27 16:28:45,251 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.8 pTM=0.793 ipTM=0.704
2024-07-27 16:29:06,086 Relaxation took 20.8s
2024-07-27 16:29:06,086 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.1 pTM=0.79 ipTM=0.685
2024-07-27 16:29:34,692 Relaxation took 28.6s
2024-07-27 16:29:34,692 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.9 pTM=0.792 ipTM=0.621
2024-07-27 16:30:03,733 Relaxation took 29.0s
2024-07-27 16:30:03,733 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.2 pTM=0.785 ipTM=0.552
2024-07-27 16:30:04,896 Done