2024-07-28 00:52:15,659 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 00:52:16,045 Running on GPU
2024-07-28 00:52:19,858 Found 6 citations for tools or databases
2024-07-28 00:52:19,858 Query 1/1: TRIM11_FBXO17 (length 747)
2024-07-28 00:52:20,328 Sleeping for 5s. Reason: PENDING
2024-07-28 00:52:25,733 Sleeping for 7s. Reason: RUNNING
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2024-07-28 00:54:44,023 Sleeping for 9s. Reason: RUNNING
2024-07-28 00:54:55,331 Sleeping for 7s. Reason: PENDING
2024-07-28 00:55:02,748 Sleeping for 9s. Reason: RUNNING
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2024-07-28 00:55:31,027 Sleeping for 10s. Reason: RUNNING
2024-07-28 00:55:41,456 Sleeping for 5s. Reason: RUNNING
2024-07-28 00:55:46,897 Sleeping for 10s. Reason: RUNNING
2024-07-28 00:55:57,317 Sleeping for 6s. Reason: RUNNING
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2024-07-28 00:56:11,173 Sleeping for 7s. Reason: RUNNING
2024-07-28 00:56:22,617 Setting max_seq=508, max_extra_seq=2048
2024-07-28 01:00:15,506 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.5 pTM=0.44 ipTM=0.281
2024-07-28 01:00:30,306 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.3 pTM=0.425 ipTM=0.227 tol=32.7
2024-07-28 01:00:45,108 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.2 pTM=0.432 ipTM=0.246 tol=31.3
2024-07-28 01:00:59,915 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.8 pTM=0.48 ipTM=0.346 tol=2.57
2024-07-28 01:01:14,737 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82 pTM=0.49 ipTM=0.327 tol=5.28
2024-07-28 01:01:29,554 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82 pTM=0.498 ipTM=0.329 tol=1.58
2024-07-28 01:01:44,381 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=82.1 pTM=0.49 ipTM=0.304 tol=0.97
2024-07-28 01:01:59,212 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82.5 pTM=0.505 ipTM=0.326 tol=0.414
2024-07-28 01:01:59,212 alphafold2_multimer_v3_model_1_seed_000 took 329.8s (7 recycles)
2024-07-28 01:02:14,535 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.6 pTM=0.407 ipTM=0.195
2024-07-28 01:02:29,360 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=82.6 pTM=0.513 ipTM=0.298 tol=33.6
2024-07-28 01:02:44,206 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.6 pTM=0.485 ipTM=0.224 tol=6.37
2024-07-28 01:02:59,088 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.8 pTM=0.485 ipTM=0.223 tol=2.57
2024-07-28 01:03:13,965 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.8 pTM=0.481 ipTM=0.213 tol=1.03
2024-07-28 01:03:28,822 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.8 pTM=0.479 ipTM=0.212 tol=1.35
2024-07-28 01:03:43,710 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.7 pTM=0.48 ipTM=0.215 tol=0.987
2024-07-28 01:03:58,587 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.9 pTM=0.48 ipTM=0.215 tol=0.528
2024-07-28 01:04:13,447 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.9 pTM=0.479 ipTM=0.213 tol=0.93
2024-07-28 01:04:28,336 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=81.8 pTM=0.484 ipTM=0.225 tol=0.833
2024-07-28 01:04:43,217 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=81.8 pTM=0.479 ipTM=0.218 tol=1.38
2024-07-28 01:04:58,085 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.9 pTM=0.481 ipTM=0.225 tol=1.89
2024-07-28 01:05:12,966 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.8 pTM=0.48 ipTM=0.224 tol=0.609
2024-07-28 01:05:27,855 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81.7 pTM=0.483 ipTM=0.228 tol=2.38
2024-07-28 01:05:42,744 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=82 pTM=0.483 ipTM=0.227 tol=1.55
2024-07-28 01:05:57,640 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=81.9 pTM=0.486 ipTM=0.231 tol=1.58
2024-07-28 01:06:12,534 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=82 pTM=0.485 ipTM=0.229 tol=0.676
2024-07-28 01:06:27,406 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=81.9 pTM=0.487 ipTM=0.235 tol=1.64
2024-07-28 01:06:42,313 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=81.9 pTM=0.486 ipTM=0.237 tol=0.826
2024-07-28 01:06:57,186 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=81.7 pTM=0.485 ipTM=0.232 tol=0.765
2024-07-28 01:07:12,055 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=81.7 pTM=0.478 ipTM=0.214 tol=0.577
2024-07-28 01:07:26,948 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=81.9 pTM=0.483 ipTM=0.226 tol=1.39
2024-07-28 01:07:41,830 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=81.8 pTM=0.482 ipTM=0.224 tol=0.678
2024-07-28 01:07:56,713 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=82 pTM=0.488 ipTM=0.234 tol=0.749
2024-07-28 01:08:11,605 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=81.9 pTM=0.486 ipTM=0.231 tol=1.1
2024-07-28 01:08:26,471 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=82.1 pTM=0.489 ipTM=0.232 tol=0.803
2024-07-28 01:08:41,363 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=81.6 pTM=0.478 ipTM=0.221 tol=0.779
2024-07-28 01:08:56,259 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=81.9 pTM=0.488 ipTM=0.234 tol=0.452
2024-07-28 01:08:56,260 alphafold2_multimer_v3_model_2_seed_000 took 416.6s (27 recycles)
2024-07-28 01:09:11,618 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.6 pTM=0.414 ipTM=0.189
2024-07-28 01:09:26,507 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.5 pTM=0.406 ipTM=0.162 tol=28.8
2024-07-28 01:09:41,405 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.5 pTM=0.413 ipTM=0.18 tol=29.4
2024-07-28 01:09:56,291 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.9 pTM=0.438 ipTM=0.195 tol=33.2
2024-07-28 01:10:11,163 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.1 pTM=0.474 ipTM=0.214 tol=2.62
2024-07-28 01:10:26,035 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.2 pTM=0.479 ipTM=0.212 tol=1.34
2024-07-28 01:10:40,905 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.2 pTM=0.483 ipTM=0.22 tol=1.5
2024-07-28 01:10:55,774 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.4 pTM=0.485 ipTM=0.217 tol=1.03
2024-07-28 01:11:10,646 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.3 pTM=0.484 ipTM=0.214 tol=2.1
2024-07-28 01:11:25,487 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.3 pTM=0.489 ipTM=0.226 tol=1.98
2024-07-28 01:11:40,365 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.6 pTM=0.48 ipTM=0.208 tol=0.968
2024-07-28 01:11:55,225 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.6 pTM=0.488 ipTM=0.228 tol=1.53
2024-07-28 01:12:10,072 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.5 pTM=0.484 ipTM=0.216 tol=1.88
2024-07-28 01:12:24,938 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.4 pTM=0.491 ipTM=0.228 tol=1.95
2024-07-28 01:12:39,805 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.6 pTM=0.485 ipTM=0.215 tol=1.92
2024-07-28 01:12:54,647 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80.6 pTM=0.489 ipTM=0.225 tol=1.77
2024-07-28 01:13:09,524 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=80.8 pTM=0.484 ipTM=0.214 tol=1.45
2024-07-28 01:13:24,384 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=80.4 pTM=0.488 ipTM=0.224 tol=1.94
2024-07-28 01:13:39,230 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.5 pTM=0.481 ipTM=0.21 tol=1.37
2024-07-28 01:13:54,087 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=80.2 pTM=0.482 ipTM=0.215 tol=1.54
2024-07-28 01:14:08,965 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.4 pTM=0.479 ipTM=0.205 tol=1.93
2024-07-28 01:14:23,830 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=80.5 pTM=0.486 ipTM=0.22 tol=0.99
2024-07-28 01:14:38,697 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80.5 pTM=0.481 ipTM=0.208 tol=1.07
2024-07-28 01:14:53,574 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.6 pTM=0.487 ipTM=0.22 tol=1.27
2024-07-28 01:15:08,441 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=80.7 pTM=0.482 ipTM=0.21 tol=1.64
2024-07-28 01:15:23,298 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=80.6 pTM=0.489 ipTM=0.225 tol=3.23
2024-07-28 01:15:38,163 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80.7 pTM=0.477 ipTM=0.204 tol=2.24
2024-07-28 01:15:53,031 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=80.4 pTM=0.483 ipTM=0.22 tol=1.25
2024-07-28 01:16:07,890 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=80.4 pTM=0.482 ipTM=0.214 tol=1.44
2024-07-28 01:16:22,759 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=80.3 pTM=0.483 ipTM=0.216 tol=1.25
2024-07-28 01:16:37,631 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=80.4 pTM=0.485 ipTM=0.216 tol=1.33
2024-07-28 01:16:37,631 alphafold2_multimer_v3_model_3_seed_000 took 460.9s (30 recycles)
2024-07-28 01:16:52,951 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73.4 pTM=0.464 ipTM=0.297
2024-07-28 01:17:07,815 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.1 pTM=0.453 ipTM=0.29 tol=39.8
2024-07-28 01:17:22,655 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.2 pTM=0.555 ipTM=0.502 tol=3.04
2024-07-28 01:17:37,509 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.2 pTM=0.557 ipTM=0.465 tol=0.815
2024-07-28 01:17:52,368 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.1 pTM=0.552 ipTM=0.442 tol=1.66
2024-07-28 01:18:07,223 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.4 pTM=0.564 ipTM=0.48 tol=0.885
2024-07-28 01:18:22,073 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.4 pTM=0.563 ipTM=0.466 tol=0.484
2024-07-28 01:18:22,073 alphafold2_multimer_v3_model_4_seed_000 took 104.0s (6 recycles)
2024-07-28 01:18:37,399 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.3 pTM=0.413 ipTM=0.231
2024-07-28 01:18:52,295 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.3 pTM=0.466 ipTM=0.223 tol=7.07
2024-07-28 01:19:07,187 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.1 pTM=0.474 ipTM=0.222 tol=8.49
2024-07-28 01:19:22,067 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.7 pTM=0.474 ipTM=0.21 tol=0.957
2024-07-28 01:19:36,977 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.1 pTM=0.477 ipTM=0.207 tol=1.21
2024-07-28 01:19:51,856 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.9 pTM=0.473 ipTM=0.204 tol=1.53
2024-07-28 01:20:06,726 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.1 pTM=0.48 ipTM=0.22 tol=1.13
2024-07-28 01:20:21,629 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.1 pTM=0.475 ipTM=0.205 tol=0.912
2024-07-28 01:20:36,502 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.1 pTM=0.475 ipTM=0.212 tol=1.17
2024-07-28 01:20:51,379 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.1 pTM=0.475 ipTM=0.212 tol=1.25
2024-07-28 01:21:06,270 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.4 pTM=0.478 ipTM=0.215 tol=3.13
2024-07-28 01:21:21,173 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.2 pTM=0.475 ipTM=0.214 tol=1.77
2024-07-28 01:21:36,066 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.2 pTM=0.477 ipTM=0.218 tol=0.884
2024-07-28 01:21:50,961 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.9 pTM=0.477 ipTM=0.217 tol=2.27
2024-07-28 01:22:05,858 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.1 pTM=0.478 ipTM=0.22 tol=2.52
2024-07-28 01:22:20,788 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.1 pTM=0.475 ipTM=0.21 tol=1.63
2024-07-28 01:22:35,684 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=80.1 pTM=0.479 ipTM=0.225 tol=1.47
2024-07-28 01:22:50,586 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80 pTM=0.475 ipTM=0.212 tol=1.98
2024-07-28 01:23:05,482 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=80 pTM=0.479 ipTM=0.226 tol=1.69
2024-07-28 01:23:20,383 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79.7 pTM=0.472 ipTM=0.211 tol=0.961
2024-07-28 01:23:35,277 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80 pTM=0.474 ipTM=0.214 tol=1.16
2024-07-28 01:23:50,170 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80.1 pTM=0.472 ipTM=0.207 tol=2.14
2024-07-28 01:24:05,060 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=80.1 pTM=0.476 ipTM=0.218 tol=1.77
2024-07-28 01:24:19,958 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=80.2 pTM=0.478 ipTM=0.212 tol=1.12
2024-07-28 01:24:34,864 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=80.2 pTM=0.479 ipTM=0.221 tol=3.24
2024-07-28 01:24:49,763 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=80.2 pTM=0.479 ipTM=0.215 tol=2.35
2024-07-28 01:25:04,649 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=80.1 pTM=0.474 ipTM=0.212 tol=1.72
2024-07-28 01:25:19,545 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.9 pTM=0.475 ipTM=0.214 tol=1.86
2024-07-28 01:25:34,450 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=80.2 pTM=0.478 ipTM=0.224 tol=1.81
2024-07-28 01:25:49,346 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=80.1 pTM=0.473 ipTM=0.212 tol=1.98
2024-07-28 01:26:04,237 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=80.1 pTM=0.477 ipTM=0.216 tol=2.6
2024-07-28 01:26:04,238 alphafold2_multimer_v3_model_5_seed_000 took 461.7s (30 recycles)
2024-07-28 01:26:04,693 reranking models by 'multimer' metric
2024-07-28 01:26:05,822 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 01:27:04,306 Relaxation took 59.6s
2024-07-28 01:27:04,306 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.4 pTM=0.563 ipTM=0.466
2024-07-28 01:27:46,918 Relaxation took 42.6s
2024-07-28 01:27:46,919 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.5 pTM=0.505 ipTM=0.326
2024-07-28 01:29:02,464 Relaxation took 75.5s
2024-07-28 01:29:02,464 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.9 pTM=0.488 ipTM=0.234
2024-07-28 01:30:26,802 Relaxation took 84.3s
2024-07-28 01:30:26,802 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.4 pTM=0.485 ipTM=0.216
2024-07-28 01:31:33,091 Relaxation took 66.3s
2024-07-28 01:31:33,092 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.1 pTM=0.477 ipTM=0.216
2024-07-28 01:31:34,782 Done