2024-07-28 02:29:29,857 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 02:29:30,173 Running on GPU
2024-07-28 02:29:33,607 Found 6 citations for tools or databases
2024-07-28 02:29:33,607 Query 1/1: TRIM35_COPS5 (length 828)
2024-07-28 02:29:34,030 Sleeping for 8s. Reason: PENDING
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2024-07-28 02:31:02,235 Sleeping for 8s. Reason: RUNNING
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2024-07-28 02:31:49,145 Sleeping for 9s. Reason: PENDING
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2024-07-28 02:33:01,258 Setting max_seq=508, max_extra_seq=2048
2024-07-28 02:35:42,225 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=68.9 pTM=0.45 ipTM=0.185
2024-07-28 02:35:56,059 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=71.1 pTM=0.475 ipTM=0.195 tol=6.68
2024-07-28 02:36:09,972 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=71.8 pTM=0.449 ipTM=0.137 tol=4.66
2024-07-28 02:36:23,917 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=70.9 pTM=0.453 ipTM=0.145 tol=4.3
2024-07-28 02:36:37,881 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=70.6 pTM=0.457 ipTM=0.155 tol=1.91
2024-07-28 02:36:51,867 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=70.3 pTM=0.452 ipTM=0.153 tol=2.14
2024-07-28 02:37:05,870 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=70.9 pTM=0.46 ipTM=0.166 tol=1.4
2024-07-28 02:37:19,893 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=70.7 pTM=0.457 ipTM=0.163 tol=0.923
2024-07-28 02:37:33,927 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=70.5 pTM=0.456 ipTM=0.163 tol=0.423
2024-07-28 02:37:33,928 alphafold2_multimer_v3_model_1_seed_000 took 268.3s (8 recycles)
2024-07-28 02:37:48,427 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=69.1 pTM=0.44 ipTM=0.159
2024-07-28 02:38:02,492 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.9 pTM=0.462 ipTM=0.155 tol=6.54
2024-07-28 02:38:16,538 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=70.4 pTM=0.469 ipTM=0.174 tol=2.88
2024-07-28 02:38:30,614 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.1 pTM=0.47 ipTM=0.179 tol=1.39
2024-07-28 02:38:44,694 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=71.3 pTM=0.466 ipTM=0.173 tol=1.19
2024-07-28 02:38:58,775 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=71 pTM=0.466 ipTM=0.175 tol=0.796
2024-07-28 02:39:12,860 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.2 pTM=0.467 ipTM=0.178 tol=0.751
2024-07-28 02:39:26,943 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.2 pTM=0.469 ipTM=0.178 tol=0.405
2024-07-28 02:39:26,944 alphafold2_multimer_v3_model_2_seed_000 took 112.6s (7 recycles)
2024-07-28 02:39:41,503 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=70.4 pTM=0.447 ipTM=0.135
2024-07-28 02:39:55,646 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.3 pTM=0.457 ipTM=0.137 tol=20.8
2024-07-28 02:40:09,743 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.2 pTM=0.454 ipTM=0.14 tol=30.1
2024-07-28 02:40:23,829 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69.6 pTM=0.459 ipTM=0.146 tol=7.57
2024-07-28 02:40:37,904 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.2 pTM=0.469 ipTM=0.151 tol=2.84
2024-07-28 02:40:51,972 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=69.3 pTM=0.469 ipTM=0.162 tol=1.85
2024-07-28 02:41:06,038 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=69.7 pTM=0.478 ipTM=0.172 tol=1.19
2024-07-28 02:41:20,100 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=69.4 pTM=0.48 ipTM=0.176 tol=0.979
2024-07-28 02:41:34,170 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=69.5 pTM=0.481 ipTM=0.179 tol=0.857
2024-07-28 02:41:48,237 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=69.2 pTM=0.483 ipTM=0.182 tol=1.21
2024-07-28 02:42:02,299 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=69.4 pTM=0.485 ipTM=0.184 tol=0.939
2024-07-28 02:42:16,364 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=69.2 pTM=0.483 ipTM=0.183 tol=2.35
2024-07-28 02:42:30,433 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=69.2 pTM=0.481 ipTM=0.181 tol=0.686
2024-07-28 02:42:44,506 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=69.5 pTM=0.484 ipTM=0.182 tol=0.676
2024-07-28 02:42:58,577 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=68.9 pTM=0.481 ipTM=0.184 tol=1.44
2024-07-28 02:43:12,648 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.8 pTM=0.481 ipTM=0.184 tol=3.66
2024-07-28 02:43:26,712 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=69.4 pTM=0.484 ipTM=0.186 tol=2.41
2024-07-28 02:43:40,790 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67.9 pTM=0.484 ipTM=0.185 tol=4.07
2024-07-28 02:43:54,856 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=69.2 pTM=0.485 ipTM=0.186 tol=2.93
2024-07-28 02:44:08,931 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=69.2 pTM=0.482 ipTM=0.18 tol=0.838
2024-07-28 02:44:23,008 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=69.2 pTM=0.483 ipTM=0.183 tol=1.14
2024-07-28 02:44:37,086 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=68.9 pTM=0.482 ipTM=0.184 tol=0.84
2024-07-28 02:44:51,154 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=69.2 pTM=0.486 ipTM=0.184 tol=1.14
2024-07-28 02:45:05,225 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=69.1 pTM=0.486 ipTM=0.188 tol=2.55
2024-07-28 02:45:19,323 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=68.9 pTM=0.484 ipTM=0.186 tol=3.17
2024-07-28 02:45:33,408 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=69 pTM=0.483 ipTM=0.188 tol=2.36
2024-07-28 02:45:47,503 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=68.7 pTM=0.485 ipTM=0.189 tol=3.19
2024-07-28 02:46:01,608 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=68.8 pTM=0.484 ipTM=0.189 tol=1.46
2024-07-28 02:46:15,714 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=68.8 pTM=0.484 ipTM=0.191 tol=1.56
2024-07-28 02:46:29,791 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=68.8 pTM=0.483 ipTM=0.19 tol=1.06
2024-07-28 02:46:43,866 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=68.8 pTM=0.481 ipTM=0.185 tol=1.19
2024-07-28 02:46:43,866 alphafold2_multimer_v3_model_3_seed_000 took 436.5s (30 recycles)
2024-07-28 02:46:58,409 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=67.1 pTM=0.447 ipTM=0.181
2024-07-28 02:47:12,508 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=68.7 pTM=0.489 ipTM=0.206 tol=10.2
2024-07-28 02:47:26,614 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=68.5 pTM=0.495 ipTM=0.214 tol=2.63
2024-07-28 02:47:40,701 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=68.9 pTM=0.499 ipTM=0.217 tol=2.58
2024-07-28 02:47:54,803 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69 pTM=0.502 ipTM=0.219 tol=2.05
2024-07-28 02:48:08,895 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=68.5 pTM=0.498 ipTM=0.226 tol=2.88
2024-07-28 02:48:23,014 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=69.1 pTM=0.502 ipTM=0.22 tol=3.79
2024-07-28 02:48:37,132 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=69.2 pTM=0.5 ipTM=0.223 tol=2.52
2024-07-28 02:48:51,233 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.1 pTM=0.5 ipTM=0.219 tol=1.36
2024-07-28 02:49:05,338 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=69.1 pTM=0.501 ipTM=0.222 tol=1.39
2024-07-28 02:49:19,433 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=69.2 pTM=0.5 ipTM=0.222 tol=0.93
2024-07-28 02:49:33,509 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69 pTM=0.499 ipTM=0.221 tol=1.43
2024-07-28 02:49:47,610 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=68.9 pTM=0.5 ipTM=0.217 tol=1.16
2024-07-28 02:50:01,708 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=69.2 pTM=0.5 ipTM=0.215 tol=1.37
2024-07-28 02:50:15,808 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=68.7 pTM=0.5 ipTM=0.218 tol=1.63
2024-07-28 02:50:29,910 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=68.9 pTM=0.499 ipTM=0.219 tol=1.19
2024-07-28 02:50:44,026 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=68.8 pTM=0.501 ipTM=0.219 tol=1.54
2024-07-28 02:50:58,136 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=68.7 pTM=0.5 ipTM=0.221 tol=1.37
2024-07-28 02:51:12,244 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=68.8 pTM=0.5 ipTM=0.217 tol=0.51
2024-07-28 02:51:26,358 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=68.7 pTM=0.5 ipTM=0.22 tol=0.857
2024-07-28 02:51:40,453 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=68.8 pTM=0.503 ipTM=0.219 tol=1.18
2024-07-28 02:51:54,548 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=68.8 pTM=0.501 ipTM=0.219 tol=0.929
2024-07-28 02:52:08,640 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=68.8 pTM=0.502 ipTM=0.216 tol=1.04
2024-07-28 02:52:22,733 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=68.4 pTM=0.501 ipTM=0.222 tol=0.891
2024-07-28 02:52:36,829 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=68.6 pTM=0.505 ipTM=0.222 tol=1.04
2024-07-28 02:52:50,917 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=68.8 pTM=0.502 ipTM=0.221 tol=0.744
2024-07-28 02:53:05,018 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=68.6 pTM=0.502 ipTM=0.22 tol=0.596
2024-07-28 02:53:19,095 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=68.6 pTM=0.502 ipTM=0.221 tol=0.947
2024-07-28 02:53:33,168 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=68.5 pTM=0.501 ipTM=0.222 tol=1.15
2024-07-28 02:53:47,248 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=68.4 pTM=0.498 ipTM=0.221 tol=1.13
2024-07-28 02:54:01,335 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=68.4 pTM=0.5 ipTM=0.22 tol=1.24
2024-07-28 02:54:01,335 alphafold2_multimer_v3_model_4_seed_000 took 437.0s (30 recycles)
2024-07-28 02:54:15,875 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.2 pTM=0.436 ipTM=0.133
2024-07-28 02:54:29,983 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.2 pTM=0.461 ipTM=0.14 tol=12.1
2024-07-28 02:54:44,071 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.7 pTM=0.475 ipTM=0.178 tol=3.05
2024-07-28 02:54:58,176 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=68.8 pTM=0.473 ipTM=0.173 tol=2.35
2024-07-28 02:55:12,261 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69 pTM=0.48 ipTM=0.183 tol=2.18
2024-07-28 02:55:26,354 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=68.8 pTM=0.483 ipTM=0.194 tol=1.98
2024-07-28 02:55:40,447 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=69.1 pTM=0.487 ipTM=0.192 tol=1.44
2024-07-28 02:55:54,535 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=68.9 pTM=0.488 ipTM=0.2 tol=0.943
2024-07-28 02:56:08,616 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=69 pTM=0.488 ipTM=0.195 tol=0.508
2024-07-28 02:56:22,703 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=68.7 pTM=0.49 ipTM=0.201 tol=0.953
2024-07-28 02:56:36,790 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=68.8 pTM=0.488 ipTM=0.193 tol=0.69
2024-07-28 02:56:50,877 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=68.8 pTM=0.49 ipTM=0.201 tol=0.917
2024-07-28 02:57:04,954 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=68.8 pTM=0.488 ipTM=0.191 tol=0.778
2024-07-28 02:57:19,035 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=69 pTM=0.489 ipTM=0.197 tol=0.689
2024-07-28 02:57:33,127 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=68.9 pTM=0.49 ipTM=0.198 tol=0.717
2024-07-28 02:57:47,204 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=68.8 pTM=0.492 ipTM=0.205 tol=0.781
2024-07-28 02:58:01,280 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=68.8 pTM=0.49 ipTM=0.199 tol=0.69
2024-07-28 02:58:15,352 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=68.9 pTM=0.492 ipTM=0.201 tol=0.475
2024-07-28 02:58:15,353 alphafold2_multimer_v3_model_5_seed_000 took 253.6s (17 recycles)
2024-07-28 02:58:15,795 reranking models by 'multimer' metric
2024-07-28 02:58:17,946 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 02:59:34,756 Relaxation took 79.0s
2024-07-28 02:59:34,756 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=68.4 pTM=0.5 ipTM=0.22
2024-07-28 03:01:10,655 Relaxation took 95.9s
2024-07-28 03:01:10,655 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=68.9 pTM=0.492 ipTM=0.201
2024-07-28 03:02:45,656 Relaxation took 95.0s
2024-07-28 03:02:45,656 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=68.8 pTM=0.481 ipTM=0.185
2024-07-28 03:03:59,255 Relaxation took 73.6s
2024-07-28 03:03:59,255 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=71.2 pTM=0.469 ipTM=0.178
2024-07-28 03:04:37,053 Relaxation took 37.8s
2024-07-28 03:04:37,053 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=70.5 pTM=0.456 ipTM=0.163
2024-07-28 03:04:38,845 Done