2024-07-28 02:55:28,360 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 02:55:28,687 Running on GPU
2024-07-28 02:55:32,256 Found 6 citations for tools or databases
2024-07-28 02:55:32,256 Query 1/1: TRIM35_FBXO44 (length 749)
2024-07-28 02:55:32,721 Sleeping for 6s. Reason: PENDING
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2024-07-28 02:58:13,554 Sleeping for 5s. Reason: PENDING
2024-07-28 02:58:18,978 Sleeping for 8s. Reason: RUNNING
2024-07-28 02:58:27,400 Sleeping for 7s. Reason: RUNNING
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2024-07-28 02:58:45,219 Sleeping for 5s. Reason: RUNNING
2024-07-28 02:58:50,639 Sleeping for 9s. Reason: RUNNING
2024-07-28 02:59:00,058 Sleeping for 6s. Reason: RUNNING
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2024-07-28 02:59:24,807 Sleeping for 7s. Reason: RUNNING
2024-07-28 02:59:35,054 Setting max_seq=508, max_extra_seq=2048
2024-07-28 03:03:03,414 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82.9 pTM=0.446 ipTM=0.118
2024-07-28 03:03:14,552 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=81.9 pTM=0.458 ipTM=0.111 tol=36.2
2024-07-28 03:03:25,717 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=81.1 pTM=0.451 ipTM=0.11 tol=5.34
2024-07-28 03:03:36,926 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.8 pTM=0.456 ipTM=0.106 tol=3.3
2024-07-28 03:03:48,149 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82.2 pTM=0.46 ipTM=0.108 tol=11.7
2024-07-28 03:03:59,392 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.8 pTM=0.455 ipTM=0.105 tol=11.1
2024-07-28 03:04:10,660 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=82.8 pTM=0.468 ipTM=0.114 tol=26.5
2024-07-28 03:04:21,916 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82.2 pTM=0.454 ipTM=0.108 tol=25.6
2024-07-28 03:04:33,196 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=82.6 pTM=0.461 ipTM=0.113 tol=20.1
2024-07-28 03:04:44,472 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=82.6 pTM=0.456 ipTM=0.106 tol=19.3
2024-07-28 03:04:55,772 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=82.7 pTM=0.459 ipTM=0.105 tol=9.23
2024-07-28 03:05:07,078 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=82.3 pTM=0.452 ipTM=0.107 tol=10.1
2024-07-28 03:05:18,386 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=82.4 pTM=0.46 ipTM=0.112 tol=21.2
2024-07-28 03:05:29,705 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=82.8 pTM=0.459 ipTM=0.109 tol=2.14
2024-07-28 03:05:41,026 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=82.5 pTM=0.458 ipTM=0.106 tol=7.25
2024-07-28 03:05:52,346 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=82.5 pTM=0.464 ipTM=0.114 tol=9.66
2024-07-28 03:06:03,665 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=82.7 pTM=0.461 ipTM=0.107 tol=8.24
2024-07-28 03:06:14,982 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=82.8 pTM=0.46 ipTM=0.109 tol=0.451
2024-07-28 03:06:14,983 alphafold2_multimer_v3_model_1_seed_000 took 395.2s (17 recycles)
2024-07-28 03:06:26,635 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.6 pTM=0.469 ipTM=0.16
2024-07-28 03:06:37,933 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.2 pTM=0.476 ipTM=0.139 tol=7.7
2024-07-28 03:06:49,225 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.9 pTM=0.484 ipTM=0.143 tol=1.39
2024-07-28 03:07:00,526 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.8 pTM=0.477 ipTM=0.132 tol=0.863
2024-07-28 03:07:11,828 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.4 pTM=0.482 ipTM=0.143 tol=1.25
2024-07-28 03:07:23,132 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.9 pTM=0.474 ipTM=0.132 tol=1.19
2024-07-28 03:07:34,440 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.6 pTM=0.476 ipTM=0.135 tol=1.22
2024-07-28 03:07:45,742 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=82.1 pTM=0.465 ipTM=0.122 tol=1.69
2024-07-28 03:07:57,045 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.4 pTM=0.475 ipTM=0.136 tol=0.691
2024-07-28 03:08:08,349 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=81.6 pTM=0.467 ipTM=0.127 tol=1.05
2024-07-28 03:08:19,661 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=81.4 pTM=0.476 ipTM=0.141 tol=1.08
2024-07-28 03:08:31,005 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.8 pTM=0.471 ipTM=0.129 tol=0.617
2024-07-28 03:08:42,313 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.6 pTM=0.472 ipTM=0.129 tol=0.608
2024-07-28 03:08:53,632 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81.8 pTM=0.468 ipTM=0.126 tol=0.688
2024-07-28 03:09:04,949 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=81.8 pTM=0.473 ipTM=0.131 tol=0.732
2024-07-28 03:09:16,279 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=81.8 pTM=0.469 ipTM=0.122 tol=0.819
2024-07-28 03:09:27,586 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=81.6 pTM=0.475 ipTM=0.137 tol=0.911
2024-07-28 03:09:38,889 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=81.5 pTM=0.475 ipTM=0.134 tol=0.384
2024-07-28 03:09:38,890 alphafold2_multimer_v3_model_2_seed_000 took 203.5s (17 recycles)
2024-07-28 03:09:50,610 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.8 pTM=0.455 ipTM=0.115
2024-07-28 03:10:01,918 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.9 pTM=0.471 ipTM=0.13 tol=22.5
2024-07-28 03:10:13,246 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.1 pTM=0.471 ipTM=0.113 tol=6.29
2024-07-28 03:10:24,563 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.7 pTM=0.478 ipTM=0.126 tol=12.9
2024-07-28 03:10:35,884 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.4 pTM=0.469 ipTM=0.114 tol=32.1
2024-07-28 03:10:47,207 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.7 pTM=0.467 ipTM=0.108 tol=8.93
2024-07-28 03:10:58,521 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.4 pTM=0.471 ipTM=0.117 tol=8.69
2024-07-28 03:11:09,860 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.1 pTM=0.472 ipTM=0.112 tol=16.2
2024-07-28 03:11:21,187 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.3 pTM=0.473 ipTM=0.112 tol=13.8
2024-07-28 03:11:32,530 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.6 pTM=0.469 ipTM=0.108 tol=3.94
2024-07-28 03:11:43,841 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.6 pTM=0.472 ipTM=0.132 tol=12
2024-07-28 03:11:55,150 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.2 pTM=0.464 ipTM=0.113 tol=3.67
2024-07-28 03:12:06,450 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.2 pTM=0.465 ipTM=0.123 tol=0.989
2024-07-28 03:12:17,773 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.9 pTM=0.469 ipTM=0.114 tol=19.6
2024-07-28 03:12:29,093 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.5 pTM=0.469 ipTM=0.112 tol=15.2
2024-07-28 03:12:40,425 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80.4 pTM=0.474 ipTM=0.119 tol=19.4
2024-07-28 03:12:51,751 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=80.2 pTM=0.469 ipTM=0.112 tol=20.6
2024-07-28 03:13:03,082 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=80.7 pTM=0.47 ipTM=0.11 tol=13.8
2024-07-28 03:13:14,425 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.9 pTM=0.473 ipTM=0.111 tol=5.41
2024-07-28 03:13:25,745 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=81.1 pTM=0.476 ipTM=0.117 tol=4.8
2024-07-28 03:13:37,084 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.9 pTM=0.475 ipTM=0.106 tol=5.1
2024-07-28 03:13:48,412 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=80.8 pTM=0.472 ipTM=0.115 tol=2.46
2024-07-28 03:13:59,743 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80.2 pTM=0.467 ipTM=0.107 tol=15.2
2024-07-28 03:14:11,069 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.9 pTM=0.474 ipTM=0.117 tol=14.2
2024-07-28 03:14:22,386 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=80.9 pTM=0.474 ipTM=0.107 tol=6.45
2024-07-28 03:14:33,701 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=81.2 pTM=0.475 ipTM=0.112 tol=2.67
2024-07-28 03:14:44,999 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80 pTM=0.473 ipTM=0.12 tol=16.4
2024-07-28 03:14:56,316 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=81 pTM=0.471 ipTM=0.111 tol=14.4
2024-07-28 03:15:07,627 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=80.5 pTM=0.474 ipTM=0.11 tol=5.94
2024-07-28 03:15:18,933 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=81 pTM=0.477 ipTM=0.12 tol=14.9
2024-07-28 03:15:30,264 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=80.6 pTM=0.474 ipTM=0.109 tol=6.83
2024-07-28 03:15:30,265 alphafold2_multimer_v3_model_3_seed_000 took 351.0s (30 recycles)
2024-07-28 03:15:41,969 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.9 pTM=0.409 ipTM=0.128
2024-07-28 03:15:53,284 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=83 pTM=0.473 ipTM=0.16 tol=14.6
2024-07-28 03:16:04,596 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83 pTM=0.48 ipTM=0.161 tol=5.85
2024-07-28 03:16:15,917 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.1 pTM=0.485 ipTM=0.131 tol=7.64
2024-07-28 03:16:27,248 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.1 pTM=0.484 ipTM=0.152 tol=3.32
2024-07-28 03:16:38,569 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.2 pTM=0.483 ipTM=0.145 tol=1.61
2024-07-28 03:16:49,897 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.4 pTM=0.49 ipTM=0.135 tol=1.71
2024-07-28 03:17:01,213 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83 pTM=0.483 ipTM=0.137 tol=1.02
2024-07-28 03:17:12,566 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=82.8 pTM=0.483 ipTM=0.135 tol=0.948
2024-07-28 03:17:23,891 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.2 pTM=0.485 ipTM=0.141 tol=1.27
2024-07-28 03:17:35,231 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82.9 pTM=0.487 ipTM=0.136 tol=1.51
2024-07-28 03:17:46,571 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.1 pTM=0.486 ipTM=0.147 tol=0.555
2024-07-28 03:17:57,911 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=82.9 pTM=0.484 ipTM=0.139 tol=0.452
2024-07-28 03:17:57,911 alphafold2_multimer_v3_model_4_seed_000 took 147.3s (12 recycles)
2024-07-28 03:18:09,596 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79 pTM=0.489 ipTM=0.223
2024-07-28 03:18:20,900 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.3 pTM=0.492 ipTM=0.162 tol=9.17
2024-07-28 03:18:32,217 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.8 pTM=0.492 ipTM=0.154 tol=2.68
2024-07-28 03:18:43,535 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.4 pTM=0.49 ipTM=0.152 tol=1.79
2024-07-28 03:18:54,848 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.4 pTM=0.489 ipTM=0.146 tol=1.91
2024-07-28 03:19:06,163 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.4 pTM=0.494 ipTM=0.153 tol=1.54
2024-07-28 03:19:17,477 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.6 pTM=0.491 ipTM=0.142 tol=5.11
2024-07-28 03:19:28,791 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.6 pTM=0.496 ipTM=0.157 tol=3.56
2024-07-28 03:19:40,092 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79 pTM=0.498 ipTM=0.158 tol=1.61
2024-07-28 03:19:51,401 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.4 pTM=0.493 ipTM=0.15 tol=2.64
2024-07-28 03:20:02,711 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.4 pTM=0.494 ipTM=0.153 tol=0.741
2024-07-28 03:20:14,017 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.2 pTM=0.495 ipTM=0.153 tol=1.72
2024-07-28 03:20:25,316 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.4 pTM=0.49 ipTM=0.145 tol=1.69
2024-07-28 03:20:36,616 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80 pTM=0.489 ipTM=0.141 tol=1.82
2024-07-28 03:20:47,922 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.4 pTM=0.496 ipTM=0.153 tol=1.79
2024-07-28 03:20:59,228 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.2 pTM=0.496 ipTM=0.15 tol=1.19
2024-07-28 03:21:10,536 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.2 pTM=0.493 ipTM=0.15 tol=1.24
2024-07-28 03:21:21,853 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=79.5 pTM=0.492 ipTM=0.145 tol=1.69
2024-07-28 03:21:33,151 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.6 pTM=0.496 ipTM=0.151 tol=0.811
2024-07-28 03:21:44,452 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79.4 pTM=0.489 ipTM=0.139 tol=1.11
2024-07-28 03:21:55,746 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=79.5 pTM=0.499 ipTM=0.158 tol=0.76
2024-07-28 03:22:07,055 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.4 pTM=0.491 ipTM=0.146 tol=1.47
2024-07-28 03:22:18,344 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.5 pTM=0.498 ipTM=0.155 tol=1.31
2024-07-28 03:22:29,640 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.2 pTM=0.493 ipTM=0.15 tol=1.4
2024-07-28 03:22:40,952 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=79.6 pTM=0.497 ipTM=0.152 tol=2.51
2024-07-28 03:22:52,259 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.6 pTM=0.501 ipTM=0.158 tol=1.52
2024-07-28 03:23:03,551 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=79.4 pTM=0.505 ipTM=0.175 tol=1.47
2024-07-28 03:23:14,839 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.4 pTM=0.496 ipTM=0.153 tol=1.15
2024-07-28 03:23:26,136 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.6 pTM=0.497 ipTM=0.156 tol=1.2
2024-07-28 03:23:37,445 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.6 pTM=0.491 ipTM=0.142 tol=1.13
2024-07-28 03:23:48,745 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=79.4 pTM=0.492 ipTM=0.148 tol=0.93
2024-07-28 03:23:48,746 alphafold2_multimer_v3_model_5_seed_000 took 350.5s (30 recycles)
2024-07-28 03:23:49,106 reranking models by 'multimer' metric
2024-07-28 03:23:50,204 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 03:25:05,911 Relaxation took 76.8s
2024-07-28 03:25:05,911 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.4 pTM=0.492 ipTM=0.148
2024-07-28 03:25:32,076 Relaxation took 26.2s
2024-07-28 03:25:32,076 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.9 pTM=0.484 ipTM=0.139
2024-07-28 03:26:03,057 Relaxation took 31.0s
2024-07-28 03:26:03,057 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.5 pTM=0.475 ipTM=0.134
2024-07-28 03:26:27,451 Relaxation took 24.4s
2024-07-28 03:26:27,452 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.6 pTM=0.474 ipTM=0.109
2024-07-28 03:26:54,007 Relaxation took 26.6s
2024-07-28 03:26:54,007 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.8 pTM=0.46 ipTM=0.109
2024-07-28 03:26:55,352 Done