2024-07-28 06:11:24,909 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 06:11:25,239 Running on GPU
2024-07-28 06:11:28,636 Found 6 citations for tools or databases
2024-07-28 06:11:28,637 Query 1/1: UBE2W_ASB6 (length 583)
2024-07-28 06:11:29,084 Sleeping for 7s. Reason: PENDING
2024-07-28 06:11:36,525 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:11:43,964 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:11:52,407 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:11:58,818 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:12:04,241 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:12:14,668 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:12:21,120 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:12:27,524 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:12:34,942 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:12:45,378 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:12:55,406 Sleeping for 7s. Reason: PENDING
2024-07-28 06:13:02,857 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:13:09,269 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:13:16,686 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:13:22,126 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:13:30,543 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:13:39,929 Setting max_seq=508, max_extra_seq=2048
2024-07-28 06:16:50,519 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.5 pTM=0.684 ipTM=0.326
2024-07-28 06:16:57,557 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.1 pTM=0.669 ipTM=0.241 tol=5.21
2024-07-28 06:17:04,590 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.8 pTM=0.668 ipTM=0.249 tol=2.33
2024-07-28 06:17:11,636 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.8 pTM=0.667 ipTM=0.244 tol=0.99
2024-07-28 06:17:18,684 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=74.5 pTM=0.668 ipTM=0.254 tol=0.827
2024-07-28 06:17:25,722 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.5 pTM=0.667 ipTM=0.256 tol=1.21
2024-07-28 06:17:32,776 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=74.2 pTM=0.664 ipTM=0.254 tol=0.708
2024-07-28 06:17:39,831 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=74.3 pTM=0.666 ipTM=0.254 tol=0.663
2024-07-28 06:17:46,905 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=74.4 pTM=0.666 ipTM=0.252 tol=0.999
2024-07-28 06:17:53,971 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=74.4 pTM=0.665 ipTM=0.253 tol=0.871
2024-07-28 06:18:01,046 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=74.4 pTM=0.665 ipTM=0.25 tol=0.686
2024-07-28 06:18:08,121 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=74.3 pTM=0.667 ipTM=0.256 tol=0.656
2024-07-28 06:18:15,192 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=74.3 pTM=0.664 ipTM=0.251 tol=0.955
2024-07-28 06:18:22,257 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=74.5 pTM=0.668 ipTM=0.255 tol=1
2024-07-28 06:18:29,348 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=74.2 pTM=0.664 ipTM=0.249 tol=0.368
2024-07-28 06:18:29,349 alphafold2_multimer_v3_model_1_seed_000 took 284.3s (14 recycles)
2024-07-28 06:18:36,654 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.2 pTM=0.669 ipTM=0.267
2024-07-28 06:18:43,750 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.3 pTM=0.667 ipTM=0.246 tol=3.81
2024-07-28 06:18:50,841 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.1 pTM=0.672 ipTM=0.242 tol=2.08
2024-07-28 06:18:57,923 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.8 pTM=0.673 ipTM=0.25 tol=2.32
2024-07-28 06:19:04,999 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.4 pTM=0.682 ipTM=0.251 tol=0.411
2024-07-28 06:19:05,000 alphafold2_multimer_v3_model_2_seed_000 took 35.4s (4 recycles)
2024-07-28 06:19:12,298 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.3 pTM=0.669 ipTM=0.243
2024-07-28 06:19:19,381 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.6 pTM=0.675 ipTM=0.265 tol=2.35
2024-07-28 06:19:26,466 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.4 pTM=0.664 ipTM=0.224 tol=2.77
2024-07-28 06:19:33,544 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=77.8 pTM=0.674 ipTM=0.241 tol=2.2
2024-07-28 06:19:40,619 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.3 pTM=0.674 ipTM=0.238 tol=1.39
2024-07-28 06:19:47,676 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.9 pTM=0.674 ipTM=0.24 tol=1.48
2024-07-28 06:19:54,753 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=77.9 pTM=0.668 ipTM=0.222 tol=2.91
2024-07-28 06:20:01,828 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=77.9 pTM=0.678 ipTM=0.246 tol=2.35
2024-07-28 06:20:08,915 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.4 pTM=0.67 ipTM=0.221 tol=2.83
2024-07-28 06:20:16,000 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=78.1 pTM=0.676 ipTM=0.241 tol=2.6
2024-07-28 06:20:23,080 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78.2 pTM=0.674 ipTM=0.232 tol=1.97
2024-07-28 06:20:30,162 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=77.9 pTM=0.674 ipTM=0.238 tol=2.03
2024-07-28 06:20:37,239 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=77.9 pTM=0.672 ipTM=0.233 tol=4.57
2024-07-28 06:20:44,324 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=77.8 pTM=0.676 ipTM=0.245 tol=4.21
2024-07-28 06:20:51,420 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.6 pTM=0.673 ipTM=0.234 tol=3.07
2024-07-28 06:20:58,495 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.4 pTM=0.676 ipTM=0.24 tol=3.52
2024-07-28 06:21:05,570 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.2 pTM=0.672 ipTM=0.229 tol=4.73
2024-07-28 06:21:12,636 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.2 pTM=0.677 ipTM=0.241 tol=4.11
2024-07-28 06:21:19,729 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=78.7 pTM=0.675 ipTM=0.232 tol=3.42
2024-07-28 06:21:26,826 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=78.6 pTM=0.678 ipTM=0.236 tol=3.97
2024-07-28 06:21:33,903 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=78.2 pTM=0.675 ipTM=0.232 tol=5
2024-07-28 06:21:40,984 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=78.2 pTM=0.678 ipTM=0.245 tol=4.55
2024-07-28 06:21:48,058 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=78.4 pTM=0.676 ipTM=0.232 tol=4.2
2024-07-28 06:21:55,146 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=78.3 pTM=0.679 ipTM=0.247 tol=4.75
2024-07-28 06:22:02,232 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=78.7 pTM=0.679 ipTM=0.236 tol=4.57
2024-07-28 06:22:09,315 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=78.6 pTM=0.675 ipTM=0.234 tol=4.29
2024-07-28 06:22:16,387 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=78.6 pTM=0.678 ipTM=0.234 tol=4.05
2024-07-28 06:22:23,461 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=78 pTM=0.675 ipTM=0.241 tol=4.15
2024-07-28 06:22:30,552 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=78.4 pTM=0.678 ipTM=0.229 tol=3.44
2024-07-28 06:22:37,638 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=77.9 pTM=0.678 ipTM=0.247 tol=3.44
2024-07-28 06:22:44,726 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=78.6 pTM=0.68 ipTM=0.234 tol=5.92
2024-07-28 06:22:44,727 alphafold2_multimer_v3_model_3_seed_000 took 219.5s (30 recycles)
2024-07-28 06:22:52,042 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.1 pTM=0.691 ipTM=0.326
2024-07-28 06:22:59,148 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.1 pTM=0.68 ipTM=0.28 tol=2.33
2024-07-28 06:23:06,242 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.8 pTM=0.673 ipTM=0.268 tol=2.73
2024-07-28 06:23:13,334 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.4 pTM=0.671 ipTM=0.271 tol=1.2
2024-07-28 06:23:20,419 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.6 pTM=0.683 ipTM=0.285 tol=2.41
2024-07-28 06:23:27,516 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.6 pTM=0.676 ipTM=0.269 tol=2.35
2024-07-28 06:23:34,615 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78 pTM=0.67 ipTM=0.247 tol=0.824
2024-07-28 06:23:41,715 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.6 pTM=0.677 ipTM=0.264 tol=0.99
2024-07-28 06:23:48,824 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.7 pTM=0.674 ipTM=0.254 tol=0.85
2024-07-28 06:23:55,928 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.1 pTM=0.677 ipTM=0.256 tol=0.779
2024-07-28 06:24:03,029 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.5 pTM=0.678 ipTM=0.262 tol=0.427
2024-07-28 06:24:03,029 alphafold2_multimer_v3_model_4_seed_000 took 78.1s (10 recycles)
2024-07-28 06:24:10,327 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.9 pTM=0.679 ipTM=0.286
2024-07-28 06:24:17,431 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.2 pTM=0.703 ipTM=0.34 tol=5.18
2024-07-28 06:24:24,534 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.1 pTM=0.681 ipTM=0.249 tol=2.36
2024-07-28 06:24:31,634 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.4 pTM=0.762 ipTM=0.543 tol=2.72
2024-07-28 06:24:38,721 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.4 pTM=0.823 ipTM=0.75 tol=1.42
2024-07-28 06:24:45,785 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.1 pTM=0.818 ipTM=0.738 tol=0.378
2024-07-28 06:24:45,786 alphafold2_multimer_v3_model_5_seed_000 took 42.5s (5 recycles)
2024-07-28 06:24:46,005 reranking models by 'multimer' metric
2024-07-28 06:24:48,755 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 06:25:24,186 Relaxation took 38.2s
2024-07-28 06:25:24,186 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.1 pTM=0.818 ipTM=0.738
2024-07-28 06:25:48,446 Relaxation took 24.3s
2024-07-28 06:25:48,446 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.5 pTM=0.678 ipTM=0.262
2024-07-28 06:26:27,940 Relaxation took 39.5s
2024-07-28 06:26:27,940 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.4 pTM=0.682 ipTM=0.251
2024-07-28 06:27:10,180 Relaxation took 42.2s
2024-07-28 06:27:10,181 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.2 pTM=0.664 ipTM=0.249
2024-07-28 06:27:52,912 Relaxation took 42.7s
2024-07-28 06:27:52,913 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.6 pTM=0.68 ipTM=0.234
2024-07-28 06:27:54,037 Done