2024-07-28 06:27:25,054 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 06:27:25,370 Running on GPU
2024-07-28 06:27:28,785 Found 6 citations for tools or databases
2024-07-28 06:27:28,785 Query 1/1: UBE2W_ELOB (length 280)
2024-07-28 06:27:29,228 Sleeping for 7s. Reason: PENDING
2024-07-28 06:27:36,662 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:27:45,103 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:27:55,512 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:28:05,535 Sleeping for 9s. Reason: PENDING
2024-07-28 06:28:14,950 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:28:22,396 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:28:33,394 Setting max_seq=508, max_extra_seq=2048
2024-07-28 06:30:50,328 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.9 pTM=0.506 ipTM=0.166
2024-07-28 06:30:52,916 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=67.1 pTM=0.479 ipTM=0.111 tol=4.87
2024-07-28 06:30:55,505 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=65.8 pTM=0.488 ipTM=0.135 tol=2.91
2024-07-28 06:30:58,091 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=66.5 pTM=0.492 ipTM=0.148 tol=3.52
2024-07-28 06:31:00,679 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=66.2 pTM=0.498 ipTM=0.156 tol=0.961
2024-07-28 06:31:03,262 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=66.3 pTM=0.496 ipTM=0.149 tol=0.826
2024-07-28 06:31:05,848 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68 pTM=0.51 ipTM=0.169 tol=1.93
2024-07-28 06:31:08,434 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=67.8 pTM=0.499 ipTM=0.147 tol=1.26
2024-07-28 06:31:11,022 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=67.5 pTM=0.498 ipTM=0.154 tol=1.38
2024-07-28 06:31:13,608 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=68.2 pTM=0.501 ipTM=0.15 tol=0.917
2024-07-28 06:31:16,194 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=67.9 pTM=0.499 ipTM=0.152 tol=0.668
2024-07-28 06:31:18,778 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=68.2 pTM=0.5 ipTM=0.149 tol=0.602
2024-07-28 06:31:21,363 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=67.6 pTM=0.5 ipTM=0.149 tol=0.499
2024-07-28 06:31:21,363 alphafold2_multimer_v3_model_1_seed_000 took 163.0s (12 recycles)
2024-07-28 06:31:24,027 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.2 pTM=0.505 ipTM=0.107
2024-07-28 06:31:26,625 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=71.6 pTM=0.488 ipTM=0.101 tol=3.59
2024-07-28 06:31:29,214 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.2 pTM=0.493 ipTM=0.113 tol=4.29
2024-07-28 06:31:31,807 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.4 pTM=0.485 ipTM=0.1 tol=1.62
2024-07-28 06:31:34,394 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=71.1 pTM=0.495 ipTM=0.129 tol=1.29
2024-07-28 06:31:36,982 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=71 pTM=0.496 ipTM=0.126 tol=1.29
2024-07-28 06:31:39,580 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=72.4 pTM=0.504 ipTM=0.145 tol=1.99
2024-07-28 06:31:42,172 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.9 pTM=0.501 ipTM=0.129 tol=1.42
2024-07-28 06:31:44,764 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=72.8 pTM=0.506 ipTM=0.143 tol=2.35
2024-07-28 06:31:47,358 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=72.8 pTM=0.504 ipTM=0.142 tol=1.54
2024-07-28 06:31:49,951 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=73.7 pTM=0.512 ipTM=0.153 tol=3.7
2024-07-28 06:31:52,544 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=74.4 pTM=0.524 ipTM=0.178 tol=1.82
2024-07-28 06:31:55,139 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=74.4 pTM=0.528 ipTM=0.182 tol=0.731
2024-07-28 06:31:57,730 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=74.7 pTM=0.532 ipTM=0.185 tol=0.316
2024-07-28 06:31:57,730 alphafold2_multimer_v3_model_2_seed_000 took 36.3s (13 recycles)
2024-07-28 06:32:00,390 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=69.8 pTM=0.501 ipTM=0.129
2024-07-28 06:32:02,973 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.8 pTM=0.5 ipTM=0.123 tol=4.84
2024-07-28 06:32:05,554 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.4 pTM=0.502 ipTM=0.121 tol=5.08
2024-07-28 06:32:08,134 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69.4 pTM=0.499 ipTM=0.117 tol=1.07
2024-07-28 06:32:10,713 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.4 pTM=0.504 ipTM=0.136 tol=2.93
2024-07-28 06:32:13,289 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=68.2 pTM=0.502 ipTM=0.13 tol=4.43
2024-07-28 06:32:15,869 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=68.9 pTM=0.506 ipTM=0.134 tol=1.95
2024-07-28 06:32:18,444 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.9 pTM=0.505 ipTM=0.13 tol=2.11
2024-07-28 06:32:21,024 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=69.4 pTM=0.511 ipTM=0.138 tol=0.993
2024-07-28 06:32:23,603 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=68 pTM=0.505 ipTM=0.147 tol=1.72
2024-07-28 06:32:26,179 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=68.4 pTM=0.511 ipTM=0.157 tol=1.64
2024-07-28 06:32:28,756 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68.6 pTM=0.514 ipTM=0.152 tol=2.39
2024-07-28 06:32:31,332 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=68.3 pTM=0.517 ipTM=0.154 tol=1.15
2024-07-28 06:32:33,907 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=68.4 pTM=0.514 ipTM=0.151 tol=1.4
2024-07-28 06:32:36,486 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=68.8 pTM=0.518 ipTM=0.158 tol=0.911
2024-07-28 06:32:39,063 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.8 pTM=0.514 ipTM=0.149 tol=0.688
2024-07-28 06:32:41,642 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=68.6 pTM=0.516 ipTM=0.152 tol=0.721
2024-07-28 06:32:44,218 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=68.4 pTM=0.511 ipTM=0.151 tol=1.94
2024-07-28 06:32:46,796 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=68.9 pTM=0.518 ipTM=0.151 tol=2.25
2024-07-28 06:32:49,373 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=68.9 pTM=0.515 ipTM=0.154 tol=1.75
2024-07-28 06:32:51,954 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=68.6 pTM=0.518 ipTM=0.158 tol=1.14
2024-07-28 06:32:54,530 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=68.1 pTM=0.51 ipTM=0.146 tol=0.907
2024-07-28 06:32:57,106 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=67.9 pTM=0.51 ipTM=0.149 tol=1.58
2024-07-28 06:32:59,683 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=68.1 pTM=0.509 ipTM=0.148 tol=2
2024-07-28 06:33:02,260 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=69.3 pTM=0.517 ipTM=0.152 tol=1.18
2024-07-28 06:33:04,838 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=68.8 pTM=0.517 ipTM=0.157 tol=1.46
2024-07-28 06:33:07,415 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=68.4 pTM=0.513 ipTM=0.15 tol=0.996
2024-07-28 06:33:09,993 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=68.3 pTM=0.513 ipTM=0.155 tol=0.975
2024-07-28 06:33:12,574 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=69.4 pTM=0.515 ipTM=0.153 tol=0.787
2024-07-28 06:33:15,152 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=69 pTM=0.513 ipTM=0.149 tol=1.72
2024-07-28 06:33:17,732 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=69.6 pTM=0.518 ipTM=0.151 tol=1.89
2024-07-28 06:33:17,732 alphafold2_multimer_v3_model_3_seed_000 took 79.9s (30 recycles)
2024-07-28 06:33:20,386 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=70.8 pTM=0.526 ipTM=0.155
2024-07-28 06:33:22,983 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=72.1 pTM=0.57 ipTM=0.202 tol=6.26
2024-07-28 06:33:25,573 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=70.2 pTM=0.527 ipTM=0.12 tol=6.26
2024-07-28 06:33:28,164 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=70.9 pTM=0.529 ipTM=0.127 tol=2.75
2024-07-28 06:33:30,752 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=70.5 pTM=0.523 ipTM=0.114 tol=5.46
2024-07-28 06:33:33,337 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=70.7 pTM=0.514 ipTM=0.104 tol=4.2
2024-07-28 06:33:35,932 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.6 pTM=0.517 ipTM=0.102 tol=1.77
2024-07-28 06:33:38,521 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=71 pTM=0.52 ipTM=0.122 tol=2.78
2024-07-28 06:33:41,115 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.4 pTM=0.522 ipTM=0.128 tol=0.996
2024-07-28 06:33:43,706 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=71.2 pTM=0.523 ipTM=0.142 tol=1.78
2024-07-28 06:33:46,298 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=71.5 pTM=0.526 ipTM=0.15 tol=3.32
2024-07-28 06:33:48,898 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=74 pTM=0.572 ipTM=0.255 tol=3.08
2024-07-28 06:33:51,496 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=74.3 pTM=0.557 ipTM=0.211 tol=0.643
2024-07-28 06:33:54,093 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.6 pTM=0.556 ipTM=0.216 tol=0.573
2024-07-28 06:33:56,695 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.4 pTM=0.585 ipTM=0.272 tol=0.728
2024-07-28 06:33:59,296 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=75.7 pTM=0.585 ipTM=0.28 tol=0.36
2024-07-28 06:33:59,296 alphafold2_multimer_v3_model_4_seed_000 took 41.5s (15 recycles)
2024-07-28 06:34:01,962 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=70.4 pTM=0.5 ipTM=0.105
2024-07-28 06:34:04,560 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=67.8 pTM=0.486 ipTM=0.0878 tol=5.37
2024-07-28 06:34:07,149 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=65.9 pTM=0.49 ipTM=0.0943 tol=6.92
2024-07-28 06:34:09,742 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.7 pTM=0.49 ipTM=0.103 tol=3.31
2024-07-28 06:34:12,337 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=66.2 pTM=0.489 ipTM=0.098 tol=4.07
2024-07-28 06:34:14,931 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=66.6 pTM=0.489 ipTM=0.0966 tol=3.76
2024-07-28 06:34:17,524 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.8 pTM=0.483 ipTM=0.0955 tol=2.93
2024-07-28 06:34:20,115 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=67.3 pTM=0.488 ipTM=0.0968 tol=3.98
2024-07-28 06:34:22,707 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=67.7 pTM=0.489 ipTM=0.0939 tol=1.69
2024-07-28 06:34:25,297 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=67.3 pTM=0.485 ipTM=0.0939 tol=1.5
2024-07-28 06:34:27,886 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=66.9 pTM=0.487 ipTM=0.0961 tol=0.908
2024-07-28 06:34:30,479 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=67.6 pTM=0.489 ipTM=0.0925 tol=1.05
2024-07-28 06:34:33,068 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66.8 pTM=0.486 ipTM=0.0931 tol=0.993
2024-07-28 06:34:35,657 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=67.8 pTM=0.489 ipTM=0.0916 tol=1.53
2024-07-28 06:34:38,247 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=67.6 pTM=0.49 ipTM=0.0939 tol=0.862
2024-07-28 06:34:40,840 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=68.2 pTM=0.489 ipTM=0.0938 tol=2.1
2024-07-28 06:34:43,433 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=68 pTM=0.49 ipTM=0.0921 tol=1.26
2024-07-28 06:34:46,026 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=67.9 pTM=0.487 ipTM=0.0967 tol=1.45
2024-07-28 06:34:48,621 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=68.3 pTM=0.49 ipTM=0.0931 tol=0.843
2024-07-28 06:34:51,214 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=68.4 pTM=0.488 ipTM=0.0958 tol=0.658
2024-07-28 06:34:53,803 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=67.4 pTM=0.488 ipTM=0.0974 tol=1.02
2024-07-28 06:34:56,396 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=67.9 pTM=0.493 ipTM=0.1 tol=1.27
2024-07-28 06:34:58,991 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=67.5 pTM=0.489 ipTM=0.1 tol=0.608
2024-07-28 06:35:01,582 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=67.9 pTM=0.496 ipTM=0.118 tol=1.76
2024-07-28 06:35:04,174 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=69.9 pTM=0.507 ipTM=0.123 tol=1.38
2024-07-28 06:35:06,765 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=69.3 pTM=0.507 ipTM=0.13 tol=0.577
2024-07-28 06:35:09,356 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=69.2 pTM=0.506 ipTM=0.136 tol=0.703
2024-07-28 06:35:11,944 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=68.6 pTM=0.507 ipTM=0.137 tol=1.01
2024-07-28 06:35:14,537 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=69.8 pTM=0.513 ipTM=0.15 tol=0.935
2024-07-28 06:35:17,135 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=69.3 pTM=0.505 ipTM=0.126 tol=1.18
2024-07-28 06:35:19,728 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=69.6 pTM=0.509 ipTM=0.133 tol=0.939
2024-07-28 06:35:19,729 alphafold2_multimer_v3_model_5_seed_000 took 80.4s (30 recycles)
2024-07-28 06:35:19,795 reranking models by 'multimer' metric
2024-07-28 06:35:20,294 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 06:36:15,953 Relaxation took 56.2s
2024-07-28 06:36:15,954 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.7 pTM=0.585 ipTM=0.28
2024-07-28 06:36:30,459 Relaxation took 14.5s
2024-07-28 06:36:30,459 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.7 pTM=0.532 ipTM=0.185
2024-07-28 06:36:36,082 Relaxation took 5.6s
2024-07-28 06:36:36,082 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=69.6 pTM=0.518 ipTM=0.151
2024-07-28 06:36:49,521 Relaxation took 13.4s
2024-07-28 06:36:49,521 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67.6 pTM=0.5 ipTM=0.149
2024-07-28 06:37:03,524 Relaxation took 14.0s
2024-07-28 06:37:03,524 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=69.6 pTM=0.509 ipTM=0.133
2024-07-28 06:37:04,375 Done