2024-07-28 06:37:38,531 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 06:37:38,853 Running on GPU
2024-07-28 06:37:42,459 Found 6 citations for tools or databases
2024-07-28 06:37:42,459 Query 1/1: UBE2W_FBXO6 (length 455)
2024-07-28 06:37:42,928 Sleeping for 10s. Reason: PENDING
2024-07-28 06:37:53,349 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:37:58,772 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:38:08,206 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:38:18,624 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:38:24,046 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:38:32,153 Sleeping for 6s. Reason: PENDING
2024-07-28 06:38:38,609 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:38:46,033 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:38:51,454 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:39:00,888 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:39:10,316 Setting max_seq=508, max_extra_seq=2048
2024-07-28 06:42:21,843 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.6 pTM=0.574 ipTM=0.145
2024-07-28 06:42:26,487 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.8 pTM=0.608 ipTM=0.36 tol=7
2024-07-28 06:42:31,135 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78 pTM=0.603 ipTM=0.351 tol=5.07
2024-07-28 06:42:35,786 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.4 pTM=0.602 ipTM=0.392 tol=2.88
2024-07-28 06:42:40,434 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79 pTM=0.604 ipTM=0.414 tol=1.71
2024-07-28 06:42:45,074 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.9 pTM=0.605 ipTM=0.446 tol=1.36
2024-07-28 06:42:49,721 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.1 pTM=0.609 ipTM=0.452 tol=0.913
2024-07-28 06:42:54,369 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.2 pTM=0.608 ipTM=0.477 tol=0.535
2024-07-28 06:42:59,011 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=78.7 pTM=0.604 ipTM=0.446 tol=0.489
2024-07-28 06:42:59,012 alphafold2_multimer_v3_model_1_seed_000 took 223.6s (8 recycles)
2024-07-28 06:43:03,823 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.8 pTM=0.576 ipTM=0.119
2024-07-28 06:43:08,481 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.1 pTM=0.588 ipTM=0.153 tol=2.52
2024-07-28 06:43:13,148 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.6 pTM=0.584 ipTM=0.141 tol=3.17
2024-07-28 06:43:17,816 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.6 pTM=0.582 ipTM=0.129 tol=5.96
2024-07-28 06:43:22,475 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.1 pTM=0.617 ipTM=0.282 tol=7.44
2024-07-28 06:43:27,137 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.9 pTM=0.601 ipTM=0.202 tol=11.7
2024-07-28 06:43:31,798 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.7 pTM=0.619 ipTM=0.272 tol=2.89
2024-07-28 06:43:36,460 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.3 pTM=0.596 ipTM=0.199 tol=2.01
2024-07-28 06:43:41,119 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=79.6 pTM=0.6 ipTM=0.207 tol=2.61
2024-07-28 06:43:45,779 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=79.7 pTM=0.595 ipTM=0.187 tol=0.688
2024-07-28 06:43:50,448 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=79.5 pTM=0.584 ipTM=0.154 tol=2.73
2024-07-28 06:43:55,118 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=80.2 pTM=0.578 ipTM=0.132 tol=7.81
2024-07-28 06:43:59,790 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=80.2 pTM=0.605 ipTM=0.212 tol=8.91
2024-07-28 06:44:04,462 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=80.6 pTM=0.624 ipTM=0.289 tol=3.7
2024-07-28 06:44:09,134 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=80.5 pTM=0.61 ipTM=0.247 tol=1.55
2024-07-28 06:44:13,803 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=79.8 pTM=0.603 ipTM=0.216 tol=1.93
2024-07-28 06:44:18,475 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=79.7 pTM=0.6 ipTM=0.211 tol=0.723
2024-07-28 06:44:23,142 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=79.5 pTM=0.599 ipTM=0.203 tol=3.74
2024-07-28 06:44:27,812 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=79.6 pTM=0.6 ipTM=0.198 tol=0.925
2024-07-28 06:44:32,483 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=79.2 pTM=0.588 ipTM=0.165 tol=2.71
2024-07-28 06:44:37,158 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=79.1 pTM=0.583 ipTM=0.137 tol=6.59
2024-07-28 06:44:41,821 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=78.7 pTM=0.586 ipTM=0.14 tol=2.95
2024-07-28 06:44:46,497 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=79.4 pTM=0.585 ipTM=0.128 tol=1.93
2024-07-28 06:44:51,165 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=78.9 pTM=0.589 ipTM=0.145 tol=1.62
2024-07-28 06:44:55,841 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=79.2 pTM=0.588 ipTM=0.14 tol=0.234
2024-07-28 06:44:55,842 alphafold2_multimer_v3_model_2_seed_000 took 116.7s (24 recycles)
2024-07-28 06:45:00,671 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83.8 pTM=0.765 ipTM=0.659
2024-07-28 06:45:05,356 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=85.6 pTM=0.789 ipTM=0.723 tol=1.69
2024-07-28 06:45:10,033 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.6 pTM=0.782 ipTM=0.699 tol=2.84
2024-07-28 06:45:14,710 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=85.7 pTM=0.782 ipTM=0.696 tol=0.314
2024-07-28 06:45:14,710 alphafold2_multimer_v3_model_3_seed_000 took 18.7s (3 recycles)
2024-07-28 06:45:19,550 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.1 pTM=0.58 ipTM=0.159
2024-07-28 06:45:24,234 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.5 pTM=0.662 ipTM=0.389 tol=3.83
2024-07-28 06:45:28,922 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.3 pTM=0.58 ipTM=0.15 tol=9.88
2024-07-28 06:45:33,604 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.9 pTM=0.579 ipTM=0.149 tol=4.47
2024-07-28 06:45:38,282 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.5 pTM=0.58 ipTM=0.156 tol=3.07
2024-07-28 06:45:42,964 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.3 pTM=0.572 ipTM=0.143 tol=3.36
2024-07-28 06:45:47,648 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.9 pTM=0.58 ipTM=0.159 tol=3.74
2024-07-28 06:45:52,336 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.2 pTM=0.571 ipTM=0.133 tol=2.41
2024-07-28 06:45:57,013 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.2 pTM=0.59 ipTM=0.183 tol=4.16
2024-07-28 06:46:01,689 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.6 pTM=0.577 ipTM=0.146 tol=3.04
2024-07-28 06:46:06,370 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.8 pTM=0.582 ipTM=0.159 tol=1.38
2024-07-28 06:46:11,051 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.7 pTM=0.581 ipTM=0.155 tol=3.88
2024-07-28 06:46:15,735 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.9 pTM=0.576 ipTM=0.148 tol=4.08
2024-07-28 06:46:20,413 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.9 pTM=0.576 ipTM=0.152 tol=3.02
2024-07-28 06:46:25,096 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.2 pTM=0.579 ipTM=0.15 tol=4.7
2024-07-28 06:46:29,777 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.8 pTM=0.584 ipTM=0.156 tol=2.4
2024-07-28 06:46:34,456 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.3 pTM=0.582 ipTM=0.15 tol=3.89
2024-07-28 06:46:39,131 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.5 pTM=0.583 ipTM=0.156 tol=1.76
2024-07-28 06:46:43,813 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=78.8 pTM=0.58 ipTM=0.149 tol=1.72
2024-07-28 06:46:48,492 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.3 pTM=0.577 ipTM=0.143 tol=3.24
2024-07-28 06:46:53,173 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=78.7 pTM=0.584 ipTM=0.168 tol=4.63
2024-07-28 06:46:57,845 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=78.1 pTM=0.581 ipTM=0.152 tol=3.52
2024-07-28 06:47:02,518 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=78.6 pTM=0.579 ipTM=0.148 tol=1.51
2024-07-28 06:47:07,193 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=78.2 pTM=0.585 ipTM=0.167 tol=3.01
2024-07-28 06:47:11,873 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=79.1 pTM=0.574 ipTM=0.148 tol=5.03
2024-07-28 06:47:16,547 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=79.8 pTM=0.577 ipTM=0.138 tol=5.16
2024-07-28 06:47:21,223 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79 pTM=0.581 ipTM=0.149 tol=3.59
2024-07-28 06:47:25,900 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=78.3 pTM=0.585 ipTM=0.159 tol=0.976
2024-07-28 06:47:30,579 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=78.8 pTM=0.581 ipTM=0.151 tol=1.6
2024-07-28 06:47:35,257 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=79.4 pTM=0.576 ipTM=0.136 tol=4.08
2024-07-28 06:47:39,938 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=78.9 pTM=0.578 ipTM=0.147 tol=2.95
2024-07-28 06:47:39,939 alphafold2_multimer_v3_model_4_seed_000 took 145.1s (30 recycles)
2024-07-28 06:47:44,767 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.4 pTM=0.611 ipTM=0.27
2024-07-28 06:47:49,437 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.8 pTM=0.675 ipTM=0.445 tol=3.29
2024-07-28 06:47:54,115 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.8 pTM=0.591 ipTM=0.213 tol=1.83
2024-07-28 06:47:58,789 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.8 pTM=0.585 ipTM=0.193 tol=2.95
2024-07-28 06:48:03,469 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.1 pTM=0.569 ipTM=0.144 tol=4.28
2024-07-28 06:48:08,146 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.8 pTM=0.587 ipTM=0.205 tol=3.93
2024-07-28 06:48:12,818 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.5 pTM=0.62 ipTM=0.297 tol=4.46
2024-07-28 06:48:17,495 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.4 pTM=0.573 ipTM=0.153 tol=2.42
2024-07-28 06:48:22,175 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.9 pTM=0.575 ipTM=0.162 tol=3.07
2024-07-28 06:48:26,852 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.8 pTM=0.57 ipTM=0.144 tol=2.29
2024-07-28 06:48:31,530 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.9 pTM=0.567 ipTM=0.141 tol=1.03
2024-07-28 06:48:36,212 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.4 pTM=0.564 ipTM=0.136 tol=4.41
2024-07-28 06:48:40,892 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.4 pTM=0.582 ipTM=0.182 tol=5.96
2024-07-28 06:48:45,559 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.3 pTM=0.581 ipTM=0.187 tol=2.77
2024-07-28 06:48:50,239 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=78.6 pTM=0.567 ipTM=0.142 tol=3.85
2024-07-28 06:48:54,912 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.9 pTM=0.59 ipTM=0.205 tol=5.96
2024-07-28 06:48:59,580 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.1 pTM=0.614 ipTM=0.287 tol=5.18
2024-07-28 06:49:04,250 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=79.8 pTM=0.597 ipTM=0.24 tol=1.83
2024-07-28 06:49:08,926 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.8 pTM=0.597 ipTM=0.237 tol=1.11
2024-07-28 06:49:13,594 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79.3 pTM=0.569 ipTM=0.151 tol=3.3
2024-07-28 06:49:18,271 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.5 pTM=0.562 ipTM=0.137 tol=2.98
2024-07-28 06:49:22,949 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=78.3 pTM=0.569 ipTM=0.144 tol=4.89
2024-07-28 06:49:27,628 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=78.2 pTM=0.57 ipTM=0.142 tol=2.63
2024-07-28 06:49:32,301 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=78.3 pTM=0.569 ipTM=0.137 tol=2.11
2024-07-28 06:49:36,976 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=79 pTM=0.591 ipTM=0.203 tol=4.5
2024-07-28 06:49:41,642 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.9 pTM=0.623 ipTM=0.304 tol=4.89
2024-07-28 06:49:46,312 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=80.4 pTM=0.61 ipTM=0.27 tol=1.93
2024-07-28 06:49:50,984 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.5 pTM=0.573 ipTM=0.157 tol=3.26
2024-07-28 06:49:55,664 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.4 pTM=0.577 ipTM=0.151 tol=4.21
2024-07-28 06:50:00,343 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.1 pTM=0.57 ipTM=0.139 tol=5.79
2024-07-28 06:50:05,027 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=79.2 pTM=0.564 ipTM=0.124 tol=2.65
2024-07-28 06:50:05,027 alphafold2_multimer_v3_model_5_seed_000 took 144.9s (30 recycles)
2024-07-28 06:50:05,170 reranking models by 'multimer' metric
2024-07-28 06:50:07,702 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 06:50:21,694 Relaxation took 16.5s
2024-07-28 06:50:21,694 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.7 pTM=0.782 ipTM=0.696
2024-07-28 06:50:31,537 Relaxation took 9.8s
2024-07-28 06:50:31,538 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.7 pTM=0.604 ipTM=0.446
2024-07-28 06:50:56,061 Relaxation took 24.5s
2024-07-28 06:50:56,061 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.9 pTM=0.578 ipTM=0.147
2024-07-28 06:51:21,124 Relaxation took 25.1s
2024-07-28 06:51:21,124 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.2 pTM=0.588 ipTM=0.14
2024-07-28 06:51:33,758 Relaxation took 12.6s
2024-07-28 06:51:33,758 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.2 pTM=0.564 ipTM=0.124
2024-07-28 06:51:34,736 Done