2024-07-28 06:41:55,565 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 06:41:55,875 Running on GPU
2024-07-28 06:41:56,817 Found 6 citations for tools or databases
2024-07-28 06:41:56,817 Query 1/1: UBE2W_KLHL36 (length 778)
2024-07-28 06:41:57,283 Sleeping for 10s. Reason: PENDING
2024-07-28 06:42:07,751 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:42:15,168 Sleeping for 10s. Reason: RUNNING
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2024-07-28 06:42:56,235 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:43:05,648 Sleeping for 7s. Reason: RUNNING
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2024-07-28 06:43:36,311 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:43:45,501 Sleeping for 7s. Reason: PENDING
2024-07-28 06:43:52,915 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:43:59,360 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:44:09,793 Sleeping for 6s. Reason: RUNNING
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2024-07-28 06:44:46,003 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:44:54,421 Sleeping for 6s. Reason: RUNNING
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2024-07-28 06:45:09,292 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:45:21,775 Setting max_seq=508, max_extra_seq=2048
2024-07-28 06:48:25,137 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=86.1 pTM=0.758 ipTM=0.587
2024-07-28 06:48:37,371 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=87.1 pTM=0.779 ipTM=0.612 tol=2.88
2024-07-28 06:48:49,610 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=86.6 pTM=0.755 ipTM=0.49 tol=1.19
2024-07-28 06:49:01,837 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85.7 pTM=0.74 ipTM=0.447 tol=0.707
2024-07-28 06:49:14,047 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.2 pTM=0.727 ipTM=0.412 tol=0.347
2024-07-28 06:49:14,047 alphafold2_multimer_v3_model_1_seed_000 took 228.7s (4 recycles)
2024-07-28 06:49:26,702 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=86.9 pTM=0.768 ipTM=0.646
2024-07-28 06:49:39,034 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=86.8 pTM=0.751 ipTM=0.491 tol=1.77
2024-07-28 06:49:51,411 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=86.4 pTM=0.736 ipTM=0.382 tol=2.46
2024-07-28 06:50:03,769 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.6 pTM=0.734 ipTM=0.383 tol=0.773
2024-07-28 06:50:16,135 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=86.2 pTM=0.725 ipTM=0.345 tol=0.402
2024-07-28 06:50:16,136 alphafold2_multimer_v3_model_2_seed_000 took 61.7s (4 recycles)
2024-07-28 06:50:28,929 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=86.2 pTM=0.699 ipTM=0.156
2024-07-28 06:50:41,341 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=86.7 pTM=0.717 ipTM=0.252 tol=11.3
2024-07-28 06:50:53,743 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=86.3 pTM=0.717 ipTM=0.321 tol=0.644
2024-07-28 06:51:06,106 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=86 pTM=0.707 ipTM=0.306 tol=0.669
2024-07-28 06:51:18,473 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.9 pTM=0.714 ipTM=0.312 tol=0.834
2024-07-28 06:51:30,859 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.7 pTM=0.696 ipTM=0.219 tol=1.51
2024-07-28 06:51:43,281 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=86.1 pTM=0.714 ipTM=0.313 tol=1.57
2024-07-28 06:51:55,690 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=86 pTM=0.706 ipTM=0.278 tol=0.762
2024-07-28 06:52:08,113 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=86.1 pTM=0.711 ipTM=0.287 tol=0.311
2024-07-28 06:52:08,113 alphafold2_multimer_v3_model_3_seed_000 took 111.6s (8 recycles)
2024-07-28 06:52:20,948 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=85.3 pTM=0.732 ipTM=0.395
2024-07-28 06:52:33,428 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=88.6 pTM=0.806 ipTM=0.688 tol=3.48
2024-07-28 06:52:45,928 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=89.2 pTM=0.815 ipTM=0.721 tol=0.66
2024-07-28 06:52:58,392 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=89.1 pTM=0.81 ipTM=0.715 tol=0.439
2024-07-28 06:52:58,393 alphafold2_multimer_v3_model_4_seed_000 took 49.9s (3 recycles)
2024-07-28 06:53:11,209 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=85.6 pTM=0.692 ipTM=0.108
2024-07-28 06:53:23,655 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=86.1 pTM=0.7 ipTM=0.117 tol=11
2024-07-28 06:53:36,111 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.6 pTM=0.701 ipTM=0.113 tol=6.72
2024-07-28 06:53:48,574 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=85.6 pTM=0.72 ipTM=0.205 tol=12.1
2024-07-28 06:54:01,016 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85.8 pTM=0.728 ipTM=0.26 tol=2.05
2024-07-28 06:54:13,483 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=86.4 pTM=0.735 ipTM=0.286 tol=1.27
2024-07-28 06:54:25,933 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=86.8 pTM=0.747 ipTM=0.36 tol=0.831
2024-07-28 06:54:38,401 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=87 pTM=0.749 ipTM=0.353 tol=0.531
2024-07-28 06:54:50,844 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=86.9 pTM=0.749 ipTM=0.357 tol=0.236
2024-07-28 06:54:50,844 alphafold2_multimer_v3_model_5_seed_000 took 112.1s (8 recycles)
2024-07-28 06:54:51,227 reranking models by 'multimer' metric
2024-07-28 06:54:52,099 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 06:55:19,181 Relaxation took 28.0s
2024-07-28 06:55:19,182 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=89.1 pTM=0.81 ipTM=0.715
2024-07-28 06:55:41,690 Relaxation took 22.5s
2024-07-28 06:55:41,690 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85.2 pTM=0.727 ipTM=0.412
2024-07-28 06:56:01,745 Relaxation took 20.1s
2024-07-28 06:56:01,745 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=86.9 pTM=0.749 ipTM=0.357
2024-07-28 06:56:24,642 Relaxation took 22.9s
2024-07-28 06:56:24,643 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=86.2 pTM=0.725 ipTM=0.345
2024-07-28 06:57:01,011 Relaxation took 36.4s
2024-07-28 06:57:01,011 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=86.1 pTM=0.711 ipTM=0.287
2024-07-28 06:57:02,443 Done