2024-07-28 06:42:32,626 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-28 06:42:32,990 Running on GPU
2024-07-28 06:42:33,989 Found 6 citations for tools or databases
2024-07-28 06:42:33,989 Query 1/1: UBE2W_RACK1 (length 479)
2024-07-28 06:42:34,444 Sleeping for 7s. Reason: PENDING
2024-07-28 06:42:41,867 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:42:48,292 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:42:53,729 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:43:01,158 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:43:08,576 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:43:18,006 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:43:28,442 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:43:36,887 Sleeping for 9s. Reason: RUNNING
2024-07-28 06:43:46,332 Sleeping for 10s. Reason: RUNNING
2024-07-28 06:43:56,766 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:44:04,190 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:44:09,651 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:44:17,075 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:44:23,531 Sleeping for 7s. Reason: RUNNING
2024-07-28 06:44:32,770 Sleeping for 10s. Reason: PENDING
2024-07-28 06:44:43,192 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:44:48,625 Sleeping for 5s. Reason: RUNNING
2024-07-28 06:44:54,045 Sleeping for 8s. Reason: RUNNING
2024-07-28 06:45:02,460 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:45:08,873 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:45:15,314 Sleeping for 6s. Reason: RUNNING
2024-07-28 06:45:25,195 Setting max_seq=508, max_extra_seq=2048
2024-07-28 06:49:13,466 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82.7 pTM=0.652 ipTM=0.129
2024-07-28 06:49:20,838 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.6 pTM=0.661 ipTM=0.136 tol=3.56
2024-07-28 06:49:28,182 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.1 pTM=0.666 ipTM=0.148 tol=2.65
2024-07-28 06:49:35,542 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.6 pTM=0.659 ipTM=0.132 tol=2.67
2024-07-28 06:49:42,869 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.3 pTM=0.665 ipTM=0.172 tol=1.48
2024-07-28 06:49:50,205 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=83.4 pTM=0.66 ipTM=0.142 tol=1.21
2024-07-28 06:49:57,546 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.4 pTM=0.665 ipTM=0.157 tol=1.18
2024-07-28 06:50:04,893 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.5 pTM=0.66 ipTM=0.141 tol=1.02
2024-07-28 06:50:12,211 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83.2 pTM=0.662 ipTM=0.161 tol=0.968
2024-07-28 06:50:19,560 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83.4 pTM=0.661 ipTM=0.138 tol=1.3
2024-07-28 06:50:26,892 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83.4 pTM=0.659 ipTM=0.132 tol=1.49
2024-07-28 06:50:34,236 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=83 pTM=0.661 ipTM=0.137 tol=1.16
2024-07-28 06:50:41,579 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=84.3 pTM=0.673 ipTM=0.21 tol=1.66
2024-07-28 06:50:48,929 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=83.5 pTM=0.66 ipTM=0.136 tol=1.44
2024-07-28 06:50:56,265 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=83.4 pTM=0.661 ipTM=0.132 tol=8.52
2024-07-28 06:51:03,598 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=83.1 pTM=0.657 ipTM=0.126 tol=0.938
2024-07-28 06:51:10,926 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=83.9 pTM=0.662 ipTM=0.134 tol=1.4
2024-07-28 06:51:18,254 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=82.9 pTM=0.655 ipTM=0.122 tol=3.49
2024-07-28 06:51:25,571 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=83.1 pTM=0.656 ipTM=0.122 tol=4.41
2024-07-28 06:51:32,914 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=82.9 pTM=0.661 ipTM=0.142 tol=2.38
2024-07-28 06:51:40,237 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=83.6 pTM=0.664 ipTM=0.167 tol=1.1
2024-07-28 06:51:47,586 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=83.4 pTM=0.66 ipTM=0.128 tol=2.41
2024-07-28 06:51:54,911 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=82.9 pTM=0.657 ipTM=0.125 tol=9.02
2024-07-28 06:52:02,255 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=83.1 pTM=0.658 ipTM=0.123 tol=1.28
2024-07-28 06:52:09,581 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=83.6 pTM=0.658 ipTM=0.122 tol=1.07
2024-07-28 06:52:16,912 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=82 pTM=0.659 ipTM=0.127 tol=8.49
2024-07-28 06:52:24,235 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=83.2 pTM=0.662 ipTM=0.147 tol=1.63
2024-07-28 06:52:31,568 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=82.7 pTM=0.659 ipTM=0.136 tol=0.71
2024-07-28 06:52:38,897 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=83.4 pTM=0.668 ipTM=0.192 tol=1.39
2024-07-28 06:52:46,236 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=83.2 pTM=0.659 ipTM=0.135 tol=1.48
2024-07-28 06:52:53,574 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=83.2 pTM=0.658 ipTM=0.125 tol=6.85
2024-07-28 06:52:53,574 alphafold2_multimer_v3_model_1_seed_000 took 441.6s (30 recycles)
2024-07-28 06:53:01,120 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.9 pTM=0.663 ipTM=0.166
2024-07-28 06:53:08,485 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85.5 pTM=0.664 ipTM=0.137 tol=3.63
2024-07-28 06:53:15,825 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.2 pTM=0.659 ipTM=0.118 tol=9.79
2024-07-28 06:53:23,179 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=85.2 pTM=0.662 ipTM=0.12 tol=4.02
2024-07-28 06:53:30,512 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=85.1 pTM=0.658 ipTM=0.116 tol=1.31
2024-07-28 06:53:37,861 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.9 pTM=0.657 ipTM=0.116 tol=1.44
2024-07-28 06:53:45,194 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.8 pTM=0.659 ipTM=0.115 tol=1.28
2024-07-28 06:53:52,536 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.8 pTM=0.662 ipTM=0.121 tol=2.03
2024-07-28 06:53:59,864 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.5 pTM=0.658 ipTM=0.117 tol=0.941
2024-07-28 06:54:07,210 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=84.7 pTM=0.663 ipTM=0.124 tol=0.782
2024-07-28 06:54:14,546 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.9 pTM=0.662 ipTM=0.126 tol=0.495
2024-07-28 06:54:14,546 alphafold2_multimer_v3_model_2_seed_000 took 80.8s (10 recycles)
2024-07-28 06:54:22,105 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=85.4 pTM=0.656 ipTM=0.139
2024-07-28 06:54:29,475 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.2 pTM=0.661 ipTM=0.136 tol=3.27
2024-07-28 06:54:36,816 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84 pTM=0.654 ipTM=0.12 tol=8.22
2024-07-28 06:54:44,165 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.2 pTM=0.657 ipTM=0.111 tol=3.01
2024-07-28 06:54:51,504 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84.4 pTM=0.661 ipTM=0.116 tol=4.62
2024-07-28 06:54:58,855 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.5 pTM=0.661 ipTM=0.112 tol=0.992
2024-07-28 06:55:06,195 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=84.7 pTM=0.663 ipTM=0.117 tol=0.743
2024-07-28 06:55:13,539 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=84.6 pTM=0.657 ipTM=0.108 tol=1.94
2024-07-28 06:55:20,874 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.2 pTM=0.658 ipTM=0.112 tol=0.778
2024-07-28 06:55:28,214 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=84.2 pTM=0.658 ipTM=0.113 tol=0.928
2024-07-28 06:55:35,544 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=84.8 pTM=0.663 ipTM=0.12 tol=2.65
2024-07-28 06:55:42,895 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=84.8 pTM=0.657 ipTM=0.108 tol=3.22
2024-07-28 06:55:50,227 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=84.4 pTM=0.657 ipTM=0.114 tol=1.65
2024-07-28 06:55:57,565 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=84.3 pTM=0.656 ipTM=0.113 tol=1.69
2024-07-28 06:56:04,889 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=84.6 pTM=0.66 ipTM=0.113 tol=3.35
2024-07-28 06:56:12,241 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=84.8 pTM=0.66 ipTM=0.109 tol=1.66
2024-07-28 06:56:19,570 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=84.7 pTM=0.661 ipTM=0.116 tol=1.17
2024-07-28 06:56:26,914 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=84.9 pTM=0.658 ipTM=0.109 tol=1.59
2024-07-28 06:56:34,247 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=85.1 pTM=0.662 ipTM=0.117 tol=1.38
2024-07-28 06:56:41,595 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=84.8 pTM=0.656 ipTM=0.109 tol=2.55
2024-07-28 06:56:48,928 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=84.6 pTM=0.658 ipTM=0.116 tol=1.28
2024-07-28 06:56:56,263 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=84.5 pTM=0.656 ipTM=0.11 tol=2.12
2024-07-28 06:57:03,598 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=84.8 pTM=0.66 ipTM=0.116 tol=2.2
2024-07-28 06:57:10,953 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=84.9 pTM=0.659 ipTM=0.113 tol=0.766
2024-07-28 06:57:18,289 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=85.2 pTM=0.666 ipTM=0.131 tol=2.14
2024-07-28 06:57:25,636 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=84.9 pTM=0.66 ipTM=0.11 tol=1.64
2024-07-28 06:57:32,958 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=84.9 pTM=0.662 ipTM=0.122 tol=1.26
2024-07-28 06:57:40,305 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=84.8 pTM=0.661 ipTM=0.114 tol=0.685
2024-07-28 06:57:47,641 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=85.2 pTM=0.665 ipTM=0.128 tol=1.31
2024-07-28 06:57:54,986 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=84.9 pTM=0.658 ipTM=0.11 tol=2.03
2024-07-28 06:58:02,317 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=85 pTM=0.667 ipTM=0.135 tol=2.15
2024-07-28 06:58:02,317 alphafold2_multimer_v3_model_3_seed_000 took 227.6s (30 recycles)
2024-07-28 06:58:09,845 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.1 pTM=0.68 ipTM=0.188
2024-07-28 06:58:17,177 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=83.4 pTM=0.671 ipTM=0.152 tol=2.55
2024-07-28 06:58:24,488 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.9 pTM=0.663 ipTM=0.123 tol=0.736
2024-07-28 06:58:31,812 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.2 pTM=0.668 ipTM=0.137 tol=1.65
2024-07-28 06:58:39,122 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.5 pTM=0.661 ipTM=0.117 tol=1.35
2024-07-28 06:58:46,437 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.1 pTM=0.673 ipTM=0.154 tol=1.26
2024-07-28 06:58:53,745 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.2 pTM=0.666 ipTM=0.127 tol=0.663
2024-07-28 06:59:01,057 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83.1 pTM=0.672 ipTM=0.153 tol=0.741
2024-07-28 06:59:08,358 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.5 pTM=0.663 ipTM=0.125 tol=1.31
2024-07-28 06:59:15,675 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.3 pTM=0.671 ipTM=0.149 tol=0.884
2024-07-28 06:59:22,973 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.4 pTM=0.666 ipTM=0.132 tol=0.593
2024-07-28 06:59:30,294 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=82.9 pTM=0.669 ipTM=0.144 tol=0.485
2024-07-28 06:59:30,294 alphafold2_multimer_v3_model_4_seed_000 took 87.8s (11 recycles)
2024-07-28 06:59:37,862 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=85 pTM=0.651 ipTM=0.127
2024-07-28 06:59:45,241 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.1 pTM=0.667 ipTM=0.135 tol=10.4
2024-07-28 06:59:52,605 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.5 pTM=0.665 ipTM=0.125 tol=1.88
2024-07-28 06:59:59,976 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=85.6 pTM=0.667 ipTM=0.132 tol=0.997
2024-07-28 07:00:07,327 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.9 pTM=0.667 ipTM=0.133 tol=1.03
2024-07-28 07:00:14,697 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.2 pTM=0.671 ipTM=0.145 tol=1.1
2024-07-28 07:00:22,051 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85.2 pTM=0.669 ipTM=0.14 tol=0.655
2024-07-28 07:00:29,417 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.1 pTM=0.67 ipTM=0.141 tol=0.455
2024-07-28 07:00:29,418 alphafold2_multimer_v3_model_5_seed_000 took 58.9s (7 recycles)
2024-07-28 07:00:29,621 reranking models by 'multimer' metric
2024-07-28 07:00:32,418 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-28 07:00:52,106 Relaxation took 22.5s
2024-07-28 07:00:52,107 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.9 pTM=0.669 ipTM=0.144
2024-07-28 07:01:27,761 Relaxation took 35.7s
2024-07-28 07:01:27,762 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.1 pTM=0.67 ipTM=0.141
2024-07-28 07:01:40,259 Relaxation took 12.5s
2024-07-28 07:01:40,260 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85 pTM=0.667 ipTM=0.135
2024-07-28 07:01:53,233 Relaxation took 13.0s
2024-07-28 07:01:53,234 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.9 pTM=0.662 ipTM=0.126
2024-07-28 07:02:20,751 Relaxation took 27.5s
2024-07-28 07:02:20,751 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.2 pTM=0.658 ipTM=0.125
2024-07-28 07:02:21,955 Done