2024-07-08 12:23:44,232 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 12:23:44,549 Running on GPU
2024-07-08 12:23:48,560 Found 6 citations for tools or databases
2024-07-08 12:23:48,560 Query 1/1: ADA_SL2A8 (length 840)
2024-07-08 12:23:49,008 Sleeping for 7s. Reason: PENDING
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2024-07-08 12:30:47,174 Setting max_seq=508, max_extra_seq=2048
2024-07-08 12:32:54,581 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=81.6 pTM=0.511 ipTM=0.169
2024-07-08 12:33:07,990 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=82.3 pTM=0.521 ipTM=0.196 tol=4.29
2024-07-08 12:33:21,422 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.6 pTM=0.519 ipTM=0.194 tol=1.86
2024-07-08 12:33:34,874 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83 pTM=0.523 ipTM=0.29 tol=1.78
2024-07-08 12:33:48,345 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.6 pTM=0.532 ipTM=0.222 tol=1.83
2024-07-08 12:34:01,822 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=83.9 pTM=0.535 ipTM=0.222 tol=1.65
2024-07-08 12:34:15,309 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84.1 pTM=0.538 ipTM=0.243 tol=1.44
2024-07-08 12:34:28,797 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=84.1 pTM=0.535 ipTM=0.221 tol=0.909
2024-07-08 12:34:42,289 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=84.1 pTM=0.539 ipTM=0.368 tol=0.894
2024-07-08 12:34:55,795 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=84.1 pTM=0.535 ipTM=0.186 tol=0.844
2024-07-08 12:35:09,300 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83.9 pTM=0.529 ipTM=0.22 tol=0.504
2024-07-08 12:35:22,820 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=84.4 pTM=0.541 ipTM=0.214 tol=0.798
2024-07-08 12:35:36,335 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=84.6 pTM=0.548 ipTM=0.423 tol=0.95
2024-07-08 12:35:49,854 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=84.5 pTM=0.546 ipTM=0.294 tol=0.57
2024-07-08 12:36:03,376 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=84.2 pTM=0.54 ipTM=0.25 tol=0.964
2024-07-08 12:36:16,888 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=84.3 pTM=0.543 ipTM=0.22 tol=0.327
2024-07-08 12:36:16,889 alphafold2_multimer_v3_model_1_seed_000 took 324.5s (15 recycles)
2024-07-08 12:36:30,853 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.5 pTM=0.547 ipTM=0.219
2024-07-08 12:36:44,362 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=82.3 pTM=0.524 ipTM=0.18 tol=2.18
2024-07-08 12:36:57,877 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=83.1 pTM=0.524 ipTM=0.161 tol=1.6
2024-07-08 12:37:11,387 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=83.8 pTM=0.528 ipTM=0.155 tol=1.88
2024-07-08 12:37:24,890 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.5 pTM=0.535 ipTM=0.158 tol=1.62
2024-07-08 12:37:38,389 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.6 pTM=0.531 ipTM=0.151 tol=1.2
2024-07-08 12:37:51,890 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.6 pTM=0.532 ipTM=0.153 tol=1.05
2024-07-08 12:38:05,392 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.7 pTM=0.532 ipTM=0.154 tol=0.704
2024-07-08 12:38:18,885 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.8 pTM=0.531 ipTM=0.149 tol=0.387
2024-07-08 12:38:18,886 alphafold2_multimer_v3_model_2_seed_000 took 121.6s (8 recycles)
2024-07-08 12:38:32,932 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83.9 pTM=0.53 ipTM=0.137
2024-07-08 12:38:46,498 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=83 pTM=0.524 ipTM=0.143 tol=9.14
2024-07-08 12:39:00,037 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.4 pTM=0.546 ipTM=0.175 tol=2.56
2024-07-08 12:39:13,563 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.9 pTM=0.544 ipTM=0.168 tol=0.978
2024-07-08 12:39:27,090 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.3 pTM=0.549 ipTM=0.18 tol=0.47
2024-07-08 12:39:27,091 alphafold2_multimer_v3_model_3_seed_000 took 67.8s (4 recycles)
2024-07-08 12:39:41,158 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.5 pTM=0.516 ipTM=0.13
2024-07-08 12:39:54,730 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=83.1 pTM=0.52 ipTM=0.149 tol=3.67
2024-07-08 12:40:08,291 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83.6 pTM=0.524 ipTM=0.152 tol=2.23
2024-07-08 12:40:21,841 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.9 pTM=0.529 ipTM=0.16 tol=1.73
2024-07-08 12:40:35,394 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.9 pTM=0.53 ipTM=0.163 tol=1.32
2024-07-08 12:40:48,931 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.9 pTM=0.531 ipTM=0.163 tol=0.667
2024-07-08 12:41:02,484 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.9 pTM=0.532 ipTM=0.166 tol=0.426
2024-07-08 12:41:02,485 alphafold2_multimer_v3_model_4_seed_000 took 95.0s (6 recycles)
2024-07-08 12:41:16,521 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.6 pTM=0.518 ipTM=0.134
2024-07-08 12:41:30,075 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.8 pTM=0.515 ipTM=0.146 tol=2.3
2024-07-08 12:41:43,640 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83.2 pTM=0.531 ipTM=0.156 tol=1.33
2024-07-08 12:41:57,201 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=83.6 pTM=0.526 ipTM=0.142 tol=1.3
2024-07-08 12:42:10,781 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=83.7 pTM=0.527 ipTM=0.146 tol=1.12
2024-07-08 12:42:24,333 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=83.8 pTM=0.53 ipTM=0.153 tol=1.3
2024-07-08 12:42:37,876 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=83.9 pTM=0.531 ipTM=0.16 tol=1.49
2024-07-08 12:42:51,425 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84 pTM=0.534 ipTM=0.166 tol=1.22
2024-07-08 12:43:04,959 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=84.1 pTM=0.535 ipTM=0.171 tol=0.699
2024-07-08 12:43:18,505 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=83.8 pTM=0.533 ipTM=0.169 tol=0.323
2024-07-08 12:43:18,506 alphafold2_multimer_v3_model_5_seed_000 took 135.6s (9 recycles)
2024-07-08 12:43:18,944 reranking models by 'multimer' metric
2024-07-08 12:43:22,277 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 12:43:54,556 Relaxation took 35.6s
2024-07-08 12:43:54,556 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=84.3 pTM=0.543 ipTM=0.22
2024-07-08 12:44:15,101 Relaxation took 20.5s
2024-07-08 12:44:15,101 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.3 pTM=0.549 ipTM=0.18
2024-07-08 12:44:36,650 Relaxation took 21.5s
2024-07-08 12:44:36,650 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=83.8 pTM=0.533 ipTM=0.169
2024-07-08 12:45:30,843 Relaxation took 54.2s
2024-07-08 12:45:30,843 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.9 pTM=0.532 ipTM=0.166
2024-07-08 12:45:57,859 Relaxation took 27.0s
2024-07-08 12:45:57,859 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.8 pTM=0.531 ipTM=0.149
2024-07-08 12:45:59,369 Done