2024-07-08 12:51:01,202 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 12:51:01,538 Running on GPU
2024-07-08 12:51:05,362 Found 6 citations for tools or databases
2024-07-08 12:51:05,362 Query 1/1: AK1D1_NRX1A (length 1803)
2024-07-08 12:51:05,811 Sleeping for 7s. Reason: PENDING
2024-07-08 12:51:13,237 Sleeping for 6s. Reason: RUNNING
2024-07-08 12:51:19,648 Sleeping for 9s. Reason: RUNNING
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2024-07-08 12:52:20,199 Sleeping for 9s. Reason: RUNNING
2024-07-08 12:52:29,618 Sleeping for 9s. Reason: RUNNING
2024-07-08 12:52:39,051 Sleeping for 8s. Reason: RUNNING
2024-07-08 12:52:47,488 Sleeping for 5s. Reason: RUNNING
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2024-07-08 12:55:12,117 Sleeping for 5s. Reason: RUNNING
2024-07-08 12:55:17,561 Sleeping for 5s. Reason: RUNNING
2024-07-08 12:55:22,980 Sleeping for 8s. Reason: RUNNING
2024-07-08 12:55:56,619 Sleeping for 8s. Reason: PENDING
2024-07-08 12:56:05,088 Sleeping for 10s. Reason: RUNNING
2024-07-08 12:56:15,512 Sleeping for 6s. Reason: RUNNING
2024-07-08 12:56:21,933 Sleeping for 8s. Reason: RUNNING
2024-07-08 12:56:30,352 Sleeping for 5s. Reason: RUNNING
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2024-07-08 12:57:21,086 Sleeping for 7s. Reason: RUNNING
2024-07-08 12:57:30,284 Sleeping for 5s. Reason: RUNNING
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2024-07-08 12:57:43,151 Sleeping for 6s. Reason: RUNNING
2024-07-08 12:57:49,559 Sleeping for 10s. Reason: RUNNING
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2024-07-08 12:58:05,426 Sleeping for 6s. Reason: RUNNING
2024-07-08 12:58:12,369 Sleeping for 7s. Reason: RUNNING
2024-07-08 12:58:19,791 Sleeping for 8s. Reason: RUNNING
2024-07-08 12:58:28,202 Sleeping for 9s. Reason: RUNNING
2024-07-08 12:58:37,643 Sleeping for 6s. Reason: RUNNING
2024-07-08 12:58:44,068 Sleeping for 8s. Reason: RUNNING
2024-07-08 12:58:54,046 Sleeping for 10s. Reason: RUNNING
2024-07-08 12:59:04,470 Sleeping for 5s. Reason: RUNNING
2024-07-08 12:59:10,067 Sleeping for 7s. Reason: RUNNING
2024-07-08 12:59:17,507 Sleeping for 9s. Reason: RUNNING
2024-07-08 12:59:26,939 Sleeping for 6s. Reason: RUNNING
2024-07-08 12:59:33,352 Sleeping for 10s. Reason: RUNNING
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2024-07-08 12:59:52,212 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:00:09,016 Setting max_seq=508, max_extra_seq=2048
2024-07-08 13:04:54,602 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.5 pTM=0.498 ipTM=0.329
2024-07-08 13:06:51,182 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.2 pTM=0.487 ipTM=0.225 tol=15.5
2024-07-08 13:08:47,827 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.8 pTM=0.476 ipTM=0.249 tol=10.2
2024-07-08 13:10:44,457 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=76.1 pTM=0.48 ipTM=0.513 tol=6.79
2024-07-08 13:12:41,070 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.3 pTM=0.481 ipTM=0.724 tol=6.97
2024-07-08 13:14:37,709 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=76.8 pTM=0.482 ipTM=0.76 tol=3.58
2024-07-08 13:16:34,331 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=76.8 pTM=0.477 ipTM=0.801 tol=3.22
2024-07-08 13:18:30,943 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=76.9 pTM=0.481 ipTM=0.814 tol=2.25
2024-07-08 13:20:27,556 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=76.8 pTM=0.475 ipTM=0.813 tol=2.22
2024-07-08 13:22:24,177 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=76.8 pTM=0.477 ipTM=0.814 tol=2.39
2024-07-08 13:24:20,728 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=76.7 pTM=0.476 ipTM=0.826 tol=2.98
2024-07-08 13:26:17,345 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=76.5 pTM=0.474 ipTM=0.821 tol=2.35
2024-07-08 13:28:13,959 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=76.6 pTM=0.477 ipTM=0.829 tol=1.99
2024-07-08 13:30:10,522 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=76.5 pTM=0.474 ipTM=0.813 tol=1.83
2024-07-08 13:32:07,090 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=76.6 pTM=0.474 ipTM=0.819 tol=2.16
2024-07-08 13:34:03,701 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=76.7 pTM=0.475 ipTM=0.813 tol=2.42
2024-07-08 13:36:00,316 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=76.7 pTM=0.474 ipTM=0.828 tol=1.68
2024-07-08 13:37:56,913 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=76.4 pTM=0.47 ipTM=0.824 tol=1.54
2024-07-08 13:39:53,496 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=76.6 pTM=0.474 ipTM=0.831 tol=1.43
2024-07-08 13:41:50,073 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=76.5 pTM=0.47 ipTM=0.828 tol=1.2
2024-07-08 13:43:46,652 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=76.7 pTM=0.474 ipTM=0.825 tol=1.1
2024-07-08 13:45:43,264 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=76.8 pTM=0.477 ipTM=0.812 tol=1.01
2024-07-08 13:47:39,836 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=76.6 pTM=0.471 ipTM=0.831 tol=1.18
2024-07-08 13:49:36,458 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=76.7 pTM=0.473 ipTM=0.828 tol=1.37
2024-07-08 13:51:33,079 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=76.6 pTM=0.469 ipTM=0.833 tol=1.57
2024-07-08 13:53:29,685 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=76.6 pTM=0.473 ipTM=0.829 tol=1.75
2024-07-08 13:55:26,263 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=76.6 pTM=0.473 ipTM=0.829 tol=1.02
2024-07-08 13:57:22,793 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=76.6 pTM=0.472 ipTM=0.823 tol=1.15
2024-07-08 13:59:19,359 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=76.4 pTM=0.466 ipTM=0.83 tol=1.89
2024-07-08 14:01:15,959 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=76.5 pTM=0.468 ipTM=0.823 tol=1.29
2024-07-08 14:03:12,548 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=76.6 pTM=0.472 ipTM=0.827 tol=1.17
2024-07-08 14:03:12,550 alphafold2_multimer_v3_model_1_seed_000 took 3778.3s (30 recycles)
2024-07-08 14:05:11,166 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.9 pTM=0.516 ipTM=0.317
2024-07-08 14:07:07,783 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77 pTM=0.538 ipTM=0.42 tol=9.9
2024-07-08 14:09:04,317 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.4 pTM=0.542 ipTM=0.509 tol=7
2024-07-08 14:11:00,885 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.3 pTM=0.533 ipTM=0.479 tol=4.03
2024-07-08 14:12:57,446 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=77.5 pTM=0.525 ipTM=0.405 tol=4.95
2024-07-08 14:14:54,053 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77.9 pTM=0.531 ipTM=0.381 tol=4.77
2024-07-08 14:16:50,690 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77.9 pTM=0.526 ipTM=0.426 tol=3.11
2024-07-08 14:18:47,326 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78 pTM=0.527 ipTM=0.448 tol=2.2
2024-07-08 14:20:43,963 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=77.9 pTM=0.525 ipTM=0.445 tol=2.33
2024-07-08 14:22:40,631 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.1 pTM=0.528 ipTM=0.438 tol=2.43
2024-07-08 14:24:37,252 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=77.9 pTM=0.525 ipTM=0.402 tol=3.3
2024-07-08 14:26:33,899 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=77.9 pTM=0.527 ipTM=0.365 tol=2.71
2024-07-08 14:28:30,569 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=77.9 pTM=0.525 ipTM=0.442 tol=1.47
2024-07-08 14:30:27,248 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=77.9 pTM=0.526 ipTM=0.452 tol=1.36
2024-07-08 14:32:23,901 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=77.9 pTM=0.528 ipTM=0.442 tol=2.83
2024-07-08 14:34:20,548 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=78.1 pTM=0.53 ipTM=0.423 tol=2.59
2024-07-08 14:36:17,214 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.1 pTM=0.527 ipTM=0.453 tol=2.35
2024-07-08 14:38:13,873 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=78 pTM=0.524 ipTM=0.454 tol=2.03
2024-07-08 14:40:10,523 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=78 pTM=0.527 ipTM=0.447 tol=1.53
2024-07-08 14:42:07,154 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=78.1 pTM=0.525 ipTM=0.431 tol=2.29
2024-07-08 14:44:03,747 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=77.9 pTM=0.528 ipTM=0.438 tol=3.75
2024-07-08 14:46:00,367 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=78.1 pTM=0.53 ipTM=0.444 tol=4.61
2024-07-08 14:47:57,042 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=78 pTM=0.526 ipTM=0.455 tol=2.96
2024-07-08 14:49:53,678 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=78.1 pTM=0.529 ipTM=0.498 tol=1.44
2024-07-08 14:51:50,252 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=77.9 pTM=0.524 ipTM=0.499 tol=2.22
2024-07-08 14:53:46,834 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=78 pTM=0.526 ipTM=0.494 tol=1.62
2024-07-08 14:55:43,459 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=78.1 pTM=0.529 ipTM=0.492 tol=2.33
2024-07-08 14:57:40,094 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=78 pTM=0.527 ipTM=0.496 tol=2.38
2024-07-08 14:59:36,690 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=78 pTM=0.524 ipTM=0.527 tol=0.885
2024-07-08 15:01:33,313 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=78.1 pTM=0.523 ipTM=0.501 tol=2.15
2024-07-08 15:03:29,947 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=78.1 pTM=0.523 ipTM=0.505 tol=2.1
2024-07-08 15:03:29,949 alphafold2_multimer_v3_model_2_seed_000 took 3615.5s (30 recycles)
2024-07-08 15:05:28,663 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.8 pTM=0.515 ipTM=0.233
2024-07-08 15:07:25,440 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.5 pTM=0.52 ipTM=0.26 tol=19.2
2024-07-08 15:09:22,218 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.3 pTM=0.512 ipTM=0.305 tol=9.11
2024-07-08 15:11:19,018 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.1 pTM=0.509 ipTM=0.291 tol=5.98
2024-07-08 15:13:15,798 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=75.8 pTM=0.503 ipTM=0.27 tol=7.85
2024-07-08 15:15:12,549 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.1 pTM=0.504 ipTM=0.263 tol=7.09
2024-07-08 15:17:09,289 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.3 pTM=0.501 ipTM=0.267 tol=5.11
2024-07-08 15:19:06,076 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76.2 pTM=0.503 ipTM=0.281 tol=2.49
2024-07-08 15:21:02,757 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.3 pTM=0.501 ipTM=0.3 tol=2.36
2024-07-08 15:22:59,456 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=75.9 pTM=0.502 ipTM=0.312 tol=8.39
2024-07-08 15:24:56,149 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.1 pTM=0.498 ipTM=0.292 tol=6.19
2024-07-08 15:26:52,842 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=76.2 pTM=0.498 ipTM=0.351 tol=4.52
2024-07-08 15:28:49,519 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=76.2 pTM=0.5 ipTM=0.387 tol=4.06
2024-07-08 15:30:46,147 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=76.3 pTM=0.497 ipTM=0.528 tol=5.56
2024-07-08 15:32:42,724 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=76.9 pTM=0.499 ipTM=0.606 tol=6.12
2024-07-08 15:34:39,290 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=77.2 pTM=0.502 ipTM=0.6 tol=5.15
2024-07-08 15:36:35,861 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=77.1 pTM=0.499 ipTM=0.591 tol=2.59
2024-07-08 15:38:32,451 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=76.8 pTM=0.492 ipTM=0.562 tol=2.4
2024-07-08 15:40:29,092 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=76.8 pTM=0.494 ipTM=0.455 tol=2.44
2024-07-08 15:42:25,744 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=76.3 pTM=0.486 ipTM=0.489 tol=9.85
2024-07-08 15:44:22,521 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=76.1 pTM=0.49 ipTM=0.422 tol=4.83
2024-07-08 15:46:19,169 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=76.8 pTM=0.497 ipTM=0.468 tol=9.52
2024-07-08 15:48:15,721 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=77.1 pTM=0.494 ipTM=0.665 tol=3.12
2024-07-08 15:50:12,246 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=77.6 pTM=0.5 ipTM=0.721 tol=2.92
2024-07-08 15:52:08,798 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=77.2 pTM=0.492 ipTM=0.708 tol=1.92
2024-07-08 15:54:05,357 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=77.4 pTM=0.494 ipTM=0.712 tol=1.02
2024-07-08 15:56:01,923 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=77.3 pTM=0.492 ipTM=0.686 tol=1.75
2024-07-08 15:57:58,506 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=77.3 pTM=0.492 ipTM=0.717 tol=0.949
2024-07-08 15:59:55,117 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=77.1 pTM=0.483 ipTM=0.704 tol=1.52
2024-07-08 16:01:51,632 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=77.3 pTM=0.488 ipTM=0.746 tol=1.29
2024-07-08 16:03:48,195 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=77.4 pTM=0.49 ipTM=0.755 tol=1.79
2024-07-08 16:03:48,197 alphafold2_multimer_v3_model_3_seed_000 took 3616.4s (30 recycles)
2024-07-08 16:05:46,902 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.6 pTM=0.505 ipTM=0.328
2024-07-08 16:07:43,604 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.5 pTM=0.527 ipTM=0.483 tol=9.75
2024-07-08 16:09:40,271 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.5 pTM=0.525 ipTM=0.396 tol=6.29
2024-07-08 16:11:36,902 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.6 pTM=0.525 ipTM=0.33 tol=3.84
2024-07-08 16:13:33,508 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.8 pTM=0.525 ipTM=0.696 tol=3.48
2024-07-08 16:15:30,104 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=76.2 pTM=0.53 ipTM=0.709 tol=3.27
2024-07-08 16:17:26,678 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76 pTM=0.523 ipTM=0.67 tol=2.74
2024-07-08 16:19:23,338 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76 pTM=0.522 ipTM=0.606 tol=1.8
2024-07-08 16:21:19,976 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.8 pTM=0.52 ipTM=0.581 tol=3.05
2024-07-08 16:23:16,620 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.8 pTM=0.517 ipTM=0.585 tol=2.51
2024-07-08 16:25:13,215 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.8 pTM=0.518 ipTM=0.57 tol=2.69
2024-07-08 16:27:09,813 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.8 pTM=0.518 ipTM=0.602 tol=2.91
2024-07-08 16:29:06,449 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.9 pTM=0.521 ipTM=0.611 tol=2.87
2024-07-08 16:31:03,032 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75.9 pTM=0.521 ipTM=0.645 tol=2.73
2024-07-08 16:32:59,680 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.9 pTM=0.522 ipTM=0.604 tol=3.49
2024-07-08 16:34:56,327 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=76.1 pTM=0.523 ipTM=0.676 tol=3.52
2024-07-08 16:36:53,005 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=76.1 pTM=0.522 ipTM=0.612 tol=2.97
2024-07-08 16:38:49,623 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=75.8 pTM=0.516 ipTM=0.658 tol=3.2
2024-07-08 16:40:46,202 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.6 pTM=0.52 ipTM=0.617 tol=2.77
2024-07-08 16:42:42,831 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=75.9 pTM=0.516 ipTM=0.675 tol=3.77
2024-07-08 16:44:39,457 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.9 pTM=0.516 ipTM=0.653 tol=3.87
2024-07-08 16:46:36,089 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=76 pTM=0.523 ipTM=0.612 tol=2.68
2024-07-08 16:48:32,693 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=75.9 pTM=0.518 ipTM=0.631 tol=3.29
2024-07-08 16:50:29,291 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=76.2 pTM=0.527 ipTM=0.682 tol=2.62
2024-07-08 16:52:25,928 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=75.9 pTM=0.517 ipTM=0.629 tol=3.65
2024-07-08 16:54:22,588 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=75.8 pTM=0.52 ipTM=0.65 tol=3.29
2024-07-08 16:56:19,223 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=75.9 pTM=0.515 ipTM=0.613 tol=1.63
2024-07-08 16:58:15,818 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=75.9 pTM=0.523 ipTM=0.663 tol=1.94
2024-07-08 17:00:12,407 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.8 pTM=0.516 ipTM=0.589 tol=2.39
2024-07-08 17:02:09,001 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75.8 pTM=0.519 ipTM=0.604 tol=2.54
2024-07-08 17:04:05,637 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=75.9 pTM=0.519 ipTM=0.569 tol=3.14
2024-07-08 17:04:05,639 alphafold2_multimer_v3_model_4_seed_000 took 3615.6s (30 recycles)
2024-07-08 17:06:04,241 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.1 pTM=0.522 ipTM=0.28
2024-07-08 17:08:00,884 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.3 pTM=0.521 ipTM=0.269 tol=12
2024-07-08 17:09:57,552 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.6 pTM=0.52 ipTM=0.291 tol=10.7
2024-07-08 17:11:54,231 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.2 pTM=0.513 ipTM=0.288 tol=7.65
2024-07-08 17:13:50,899 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.8 pTM=0.515 ipTM=0.56 tol=6.75
2024-07-08 17:15:47,552 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.1 pTM=0.516 ipTM=0.625 tol=3.13
2024-07-08 17:17:44,196 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.1 pTM=0.514 ipTM=0.698 tol=2.37
2024-07-08 17:19:40,767 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=77.1 pTM=0.509 ipTM=0.676 tol=2.82
2024-07-08 17:21:37,347 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77 pTM=0.507 ipTM=0.601 tol=2.88
2024-07-08 17:23:33,975 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.9 pTM=0.507 ipTM=0.536 tol=2.22
2024-07-08 17:25:30,595 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76.9 pTM=0.504 ipTM=0.585 tol=1.71
2024-07-08 17:27:27,255 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=76.9 pTM=0.503 ipTM=0.68 tol=2.14
2024-07-08 17:29:23,900 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.9 pTM=0.504 ipTM=0.53 tol=1.65
2024-07-08 17:31:20,492 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=76.9 pTM=0.501 ipTM=0.603 tol=1.52
2024-07-08 17:33:17,114 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=76.7 pTM=0.502 ipTM=0.507 tol=3.39
2024-07-08 17:35:13,750 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=76.9 pTM=0.502 ipTM=0.501 tol=3.12
2024-07-08 17:37:10,336 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=77 pTM=0.503 ipTM=0.598 tol=2.58
2024-07-08 17:39:06,917 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=76.7 pTM=0.498 ipTM=0.542 tol=2.11
2024-07-08 17:41:03,546 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=76.9 pTM=0.501 ipTM=0.655 tol=1.9
2024-07-08 17:43:00,200 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=76.8 pTM=0.5 ipTM=0.543 tol=2.59
2024-07-08 17:44:56,890 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=76.9 pTM=0.498 ipTM=0.671 tol=2.17
2024-07-08 17:46:53,602 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=76.7 pTM=0.499 ipTM=0.524 tol=2.3
2024-07-08 17:48:50,320 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=76.7 pTM=0.498 ipTM=0.494 tol=2.56
2024-07-08 17:50:47,018 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=76.8 pTM=0.503 ipTM=0.359 tol=1.87
2024-07-08 17:52:43,688 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=76.6 pTM=0.5 ipTM=0.466 tol=1.16
2024-07-08 17:54:40,371 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=76.6 pTM=0.499 ipTM=0.561 tol=1.09
2024-07-08 17:56:36,991 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=76.9 pTM=0.501 ipTM=0.714 tol=1.86
2024-07-08 17:58:33,628 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=76.8 pTM=0.502 ipTM=0.65 tol=2.27
2024-07-08 18:00:30,262 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=76.8 pTM=0.5 ipTM=0.633 tol=1.27
2024-07-08 18:02:26,881 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=76.8 pTM=0.501 ipTM=0.528 tol=1.29
2024-07-08 18:04:23,470 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=76.8 pTM=0.503 ipTM=0.567 tol=1.21
2024-07-08 18:04:23,471 alphafold2_multimer_v3_model_5_seed_000 took 3615.9s (30 recycles)
2024-07-08 18:04:25,347 reranking models by 'multimer' metric
2024-07-08 18:04:29,314 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 18:07:09,720 Relaxation took 164.4s
2024-07-08 18:07:09,720 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.6 pTM=0.472 ipTM=0.827
2024-07-08 18:09:55,321 Relaxation took 165.6s
2024-07-08 18:09:55,322 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.4 pTM=0.49 ipTM=0.755
2024-07-08 18:12:33,045 Relaxation took 157.7s
2024-07-08 18:12:33,045 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.9 pTM=0.519 ipTM=0.569
2024-07-08 18:14:50,261 Relaxation took 137.2s
2024-07-08 18:14:50,261 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.8 pTM=0.503 ipTM=0.567
2024-07-08 18:17:44,140 Relaxation took 173.9s
2024-07-08 18:17:44,140 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.1 pTM=0.523 ipTM=0.505
2024-07-08 18:17:48,359 Done