2024-07-08 13:03:11,018 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 13:03:11,344 Running on GPU
2024-07-08 13:03:15,466 Found 6 citations for tools or databases
2024-07-08 13:03:15,466 Query 1/1: ALKB8_MK06 (length 1385)
2024-07-08 13:03:15,944 Sleeping for 8s. Reason: PENDING
2024-07-08 13:03:24,370 Sleeping for 10s. Reason: RUNNING
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2024-07-08 13:05:17,613 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:05:25,051 Sleeping for 6s. Reason: RUNNING
2024-07-08 13:05:31,457 Sleeping for 7s. Reason: RUNNING
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2024-07-08 13:05:59,131 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:06:06,546 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:06:13,967 Sleeping for 8s. Reason: RUNNING
2024-07-08 13:06:22,373 Sleeping for 6s. Reason: RUNNING
2024-07-08 13:06:28,800 Sleeping for 8s. Reason: RUNNING
2024-07-08 13:06:37,201 Sleeping for 9s. Reason: RUNNING
2024-07-08 13:06:46,636 Sleeping for 6s. Reason: RUNNING
2024-07-08 13:06:53,055 Sleeping for 5s. Reason: RUNNING
2024-07-08 13:06:58,500 Sleeping for 10s. Reason: RUNNING
2024-07-08 13:07:59,341 Sleeping for 8s. Reason: PENDING
2024-07-08 13:08:07,764 Sleeping for 9s. Reason: RUNNING
2024-07-08 13:08:17,699 Sleeping for 10s. Reason: RUNNING
2024-07-08 13:08:28,142 Sleeping for 5s. Reason: RUNNING
2024-07-08 13:08:33,567 Sleeping for 9s. Reason: RUNNING
2024-07-08 13:08:43,016 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:08:50,433 Sleeping for 5s. Reason: RUNNING
2024-07-08 13:08:55,853 Sleeping for 10s. Reason: RUNNING
2024-07-08 13:09:06,275 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:09:13,895 Sleeping for 10s. Reason: RUNNING
2024-07-08 13:09:24,305 Sleeping for 10s. Reason: RUNNING
2024-07-08 13:09:34,732 Sleeping for 9s. Reason: RUNNING
2024-07-08 13:09:44,152 Sleeping for 7s. Reason: RUNNING
2024-07-08 13:09:51,582 Sleeping for 9s. Reason: RUNNING
2024-07-08 13:10:01,022 Sleeping for 8s. Reason: RUNNING
2024-07-08 13:10:09,466 Sleeping for 9s. Reason: RUNNING
2024-07-08 13:10:18,913 Sleeping for 10s. Reason: RUNNING
2024-07-08 13:10:42,531 Setting max_seq=508, max_extra_seq=2048
2024-07-08 13:14:24,526 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=57.7 pTM=0.363 ipTM=0.192
2024-07-08 13:15:16,829 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=58 pTM=0.399 ipTM=0.246 tol=14.4
2024-07-08 13:16:09,345 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=58.1 pTM=0.371 ipTM=0.194 tol=11.2
2024-07-08 13:17:01,972 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=58.4 pTM=0.365 ipTM=0.188 tol=8.39
2024-07-08 13:17:54,570 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=58.3 pTM=0.369 ipTM=0.195 tol=4.75
2024-07-08 13:18:47,195 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.7 pTM=0.364 ipTM=0.186 tol=9.77
2024-07-08 13:19:39,811 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=58.7 pTM=0.369 ipTM=0.195 tol=6.75
2024-07-08 13:20:32,511 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=58.8 pTM=0.363 ipTM=0.186 tol=4.89
2024-07-08 13:21:25,235 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=58.7 pTM=0.367 ipTM=0.194 tol=5.02
2024-07-08 13:22:17,954 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=58.9 pTM=0.365 ipTM=0.191 tol=4.31
2024-07-08 13:23:10,648 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=58.4 pTM=0.365 ipTM=0.194 tol=5.39
2024-07-08 13:24:03,378 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=58.6 pTM=0.362 ipTM=0.194 tol=3.73
2024-07-08 13:24:56,119 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58.4 pTM=0.366 ipTM=0.198 tol=7.14
2024-07-08 13:25:48,874 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=58.7 pTM=0.359 ipTM=0.191 tol=4.74
2024-07-08 13:26:41,608 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.4 pTM=0.36 ipTM=0.194 tol=5.73
2024-07-08 13:27:34,359 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.7 pTM=0.358 ipTM=0.189 tol=5.66
2024-07-08 13:28:27,088 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=58.3 pTM=0.36 ipTM=0.196 tol=4.43
2024-07-08 13:29:19,812 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=58.3 pTM=0.357 ipTM=0.191 tol=3.89
2024-07-08 13:30:12,456 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.3 pTM=0.361 ipTM=0.197 tol=4.64
2024-07-08 13:31:05,169 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=58.5 pTM=0.356 ipTM=0.188 tol=5.28
2024-07-08 13:31:57,850 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=58.3 pTM=0.361 ipTM=0.198 tol=5.66
2024-07-08 13:32:50,537 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=58.2 pTM=0.356 ipTM=0.19 tol=4.64
2024-07-08 13:33:43,205 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.4 pTM=0.359 ipTM=0.194 tol=5.77
2024-07-08 13:34:35,871 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.1 pTM=0.356 ipTM=0.19 tol=4.32
2024-07-08 13:35:28,525 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58.3 pTM=0.36 ipTM=0.197 tol=4.59
2024-07-08 13:36:21,201 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.2 pTM=0.357 ipTM=0.191 tol=3.45
2024-07-08 13:37:13,896 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=58.2 pTM=0.36 ipTM=0.198 tol=4.63
2024-07-08 13:38:06,553 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58.3 pTM=0.358 ipTM=0.194 tol=4.01
2024-07-08 13:38:59,226 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=58.4 pTM=0.36 ipTM=0.195 tol=3.98
2024-07-08 13:39:51,893 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=58.1 pTM=0.356 ipTM=0.193 tol=4.24
2024-07-08 13:40:44,539 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58 pTM=0.359 ipTM=0.195 tol=3.69
2024-07-08 13:40:44,540 alphafold2_multimer_v3_model_1_seed_000 took 1796.9s (30 recycles)
2024-07-08 13:41:38,314 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=59.3 pTM=0.392 ipTM=0.223
2024-07-08 13:42:31,068 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.1 pTM=0.39 ipTM=0.208 tol=14.7
2024-07-08 13:43:23,818 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=60.3 pTM=0.393 ipTM=0.219 tol=6.58
2024-07-08 13:44:16,541 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=61.1 pTM=0.412 ipTM=0.277 tol=4.58
2024-07-08 13:45:09,271 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.7 pTM=0.406 ipTM=0.261 tol=4.3
2024-07-08 13:46:02,037 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.6 pTM=0.395 ipTM=0.227 tol=3.51
2024-07-08 13:46:54,792 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.4 pTM=0.389 ipTM=0.214 tol=2.82
2024-07-08 13:47:47,539 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.5 pTM=0.387 ipTM=0.211 tol=2.61
2024-07-08 13:48:40,270 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=60.5 pTM=0.389 ipTM=0.21 tol=7.16
2024-07-08 13:49:33,002 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.5 pTM=0.387 ipTM=0.21 tol=4.94
2024-07-08 13:50:25,748 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.5 pTM=0.385 ipTM=0.203 tol=3.21
2024-07-08 13:51:18,520 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.4 pTM=0.38 ipTM=0.195 tol=2.94
2024-07-08 13:52:11,298 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.3 pTM=0.38 ipTM=0.194 tol=3.12
2024-07-08 13:53:04,100 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.3 pTM=0.378 ipTM=0.191 tol=3.25
2024-07-08 13:53:56,906 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.3 pTM=0.381 ipTM=0.197 tol=3.6
2024-07-08 13:54:49,668 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.5 pTM=0.382 ipTM=0.201 tol=2.93
2024-07-08 13:55:42,443 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.4 pTM=0.382 ipTM=0.196 tol=2.7
2024-07-08 13:56:35,246 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.4 pTM=0.379 ipTM=0.197 tol=2.12
2024-07-08 13:57:27,991 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.5 pTM=0.386 ipTM=0.209 tol=4.28
2024-07-08 13:58:20,730 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.6 pTM=0.393 ipTM=0.222 tol=3.18
2024-07-08 13:59:13,464 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=60.6 pTM=0.391 ipTM=0.224 tol=2.36
2024-07-08 14:00:06,200 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.6 pTM=0.395 ipTM=0.226 tol=3.64
2024-07-08 14:00:58,901 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.6 pTM=0.393 ipTM=0.225 tol=3.6
2024-07-08 14:01:51,644 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.4 pTM=0.389 ipTM=0.214 tol=3.88
2024-07-08 14:02:44,369 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.4 pTM=0.389 ipTM=0.216 tol=2.34
2024-07-08 14:03:37,082 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.2 pTM=0.381 ipTM=0.203 tol=2.23
2024-07-08 14:04:29,823 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.2 pTM=0.379 ipTM=0.196 tol=2.34
2024-07-08 14:05:22,579 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.2 pTM=0.378 ipTM=0.194 tol=2.87
2024-07-08 14:06:15,307 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.1 pTM=0.378 ipTM=0.193 tol=4.8
2024-07-08 14:07:08,062 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.2 pTM=0.38 ipTM=0.199 tol=3.18
2024-07-08 14:08:00,831 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.2 pTM=0.38 ipTM=0.199 tol=3.62
2024-07-08 14:08:00,832 alphafold2_multimer_v3_model_2_seed_000 took 1635.2s (30 recycles)
2024-07-08 14:08:54,728 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=59.2 pTM=0.367 ipTM=0.184
2024-07-08 14:09:47,599 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=61.1 pTM=0.51 ipTM=0.485 tol=17.5
2024-07-08 14:10:40,499 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.7 pTM=0.385 ipTM=0.194 tol=15.4
2024-07-08 14:11:33,451 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=58.4 pTM=0.377 ipTM=0.186 tol=10.1
2024-07-08 14:12:26,308 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=59.5 pTM=0.389 ipTM=0.216 tol=11.6
2024-07-08 14:13:19,217 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=59 pTM=0.377 ipTM=0.19 tol=7.24
2024-07-08 14:14:12,108 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=58.8 pTM=0.375 ipTM=0.182 tol=5.35
2024-07-08 14:15:04,996 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=59.3 pTM=0.373 ipTM=0.177 tol=7.32
2024-07-08 14:15:57,857 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=59.8 pTM=0.384 ipTM=0.203 tol=6.84
2024-07-08 14:16:50,743 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=59.5 pTM=0.375 ipTM=0.187 tol=4.03
2024-07-08 14:17:43,617 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=59.5 pTM=0.378 ipTM=0.192 tol=4.87
2024-07-08 14:18:36,501 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=59.6 pTM=0.377 ipTM=0.195 tol=4.69
2024-07-08 14:19:29,373 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=59.4 pTM=0.378 ipTM=0.194 tol=4.45
2024-07-08 14:20:22,204 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=59.6 pTM=0.381 ipTM=0.202 tol=4.52
2024-07-08 14:21:15,079 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=59.8 pTM=0.384 ipTM=0.21 tol=6.54
2024-07-08 14:22:07,909 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=59.9 pTM=0.388 ipTM=0.214 tol=7.41
2024-07-08 14:23:00,723 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=59.7 pTM=0.381 ipTM=0.202 tol=6.44
2024-07-08 14:23:53,536 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=59.9 pTM=0.382 ipTM=0.208 tol=5.49
2024-07-08 14:24:46,346 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=59.6 pTM=0.378 ipTM=0.196 tol=4.37
2024-07-08 14:25:39,093 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=59.8 pTM=0.38 ipTM=0.196 tol=5.7
2024-07-08 14:26:31,808 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=59.8 pTM=0.383 ipTM=0.203 tol=5.17
2024-07-08 14:27:24,525 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=59.8 pTM=0.382 ipTM=0.203 tol=4.47
2024-07-08 14:28:17,278 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=59.9 pTM=0.382 ipTM=0.201 tol=4.82
2024-07-08 14:29:10,025 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=59.7 pTM=0.38 ipTM=0.195 tol=4.65
2024-07-08 14:30:02,805 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=59.7 pTM=0.381 ipTM=0.198 tol=3.94
2024-07-08 14:30:55,594 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=59.8 pTM=0.382 ipTM=0.204 tol=3.81
2024-07-08 14:31:48,428 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=59.7 pTM=0.38 ipTM=0.2 tol=4.76
2024-07-08 14:32:41,245 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=59.9 pTM=0.381 ipTM=0.198 tol=6.02
2024-07-08 14:33:34,080 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=59.7 pTM=0.38 ipTM=0.199 tol=5.28
2024-07-08 14:34:26,891 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=59.7 pTM=0.383 ipTM=0.203 tol=4.97
2024-07-08 14:35:19,717 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=59.7 pTM=0.38 ipTM=0.203 tol=4.41
2024-07-08 14:35:19,719 alphafold2_multimer_v3_model_3_seed_000 took 1637.7s (30 recycles)
2024-07-08 14:36:13,464 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.4 pTM=0.385 ipTM=0.213
2024-07-08 14:37:06,121 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=56.6 pTM=0.469 ipTM=0.404 tol=12.9
2024-07-08 14:37:58,998 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58 pTM=0.375 ipTM=0.191 tol=13.4
2024-07-08 14:38:51,916 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=57.8 pTM=0.374 ipTM=0.194 tol=11
2024-07-08 14:39:44,748 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=57.3 pTM=0.374 ipTM=0.197 tol=9.68
2024-07-08 14:40:37,593 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=57.5 pTM=0.374 ipTM=0.198 tol=7.93
2024-07-08 14:41:30,456 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=57.8 pTM=0.375 ipTM=0.193 tol=7.95
2024-07-08 14:42:23,318 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=57.8 pTM=0.372 ipTM=0.194 tol=8.24
2024-07-08 14:43:16,257 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=58 pTM=0.374 ipTM=0.192 tol=6.72
2024-07-08 14:44:09,129 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=57.7 pTM=0.372 ipTM=0.192 tol=8.33
2024-07-08 14:45:02,006 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=57.9 pTM=0.372 ipTM=0.19 tol=8.8
2024-07-08 14:45:54,838 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=58.1 pTM=0.376 ipTM=0.196 tol=8.1
2024-07-08 14:46:47,716 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=58.2 pTM=0.375 ipTM=0.191 tol=8.27
2024-07-08 14:47:40,602 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=58.2 pTM=0.377 ipTM=0.194 tol=8.1
2024-07-08 14:48:33,522 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=58.2 pTM=0.376 ipTM=0.19 tol=8.86
2024-07-08 14:49:26,430 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=58.2 pTM=0.376 ipTM=0.193 tol=10.4
2024-07-08 14:50:19,335 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=58.1 pTM=0.378 ipTM=0.193 tol=9.57
2024-07-08 14:51:12,243 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=58.1 pTM=0.376 ipTM=0.196 tol=10.2
2024-07-08 14:52:05,157 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=58 pTM=0.375 ipTM=0.19 tol=9.08
2024-07-08 14:52:58,085 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=58.2 pTM=0.373 ipTM=0.189 tol=8.34
2024-07-08 14:53:50,959 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=58.1 pTM=0.377 ipTM=0.193 tol=9.86
2024-07-08 14:54:43,857 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=58.2 pTM=0.377 ipTM=0.191 tol=11
2024-07-08 14:55:36,708 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=58.5 pTM=0.377 ipTM=0.191 tol=10.7
2024-07-08 14:56:29,552 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=58.2 pTM=0.378 ipTM=0.194 tol=12.2
2024-07-08 14:57:22,399 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=58.4 pTM=0.377 ipTM=0.191 tol=10.4
2024-07-08 14:58:15,221 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=58 pTM=0.375 ipTM=0.193 tol=10.4
2024-07-08 14:59:08,048 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=58.2 pTM=0.376 ipTM=0.19 tol=9.43
2024-07-08 15:00:00,848 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=58.4 pTM=0.38 ipTM=0.2 tol=11.4
2024-07-08 15:00:53,686 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=58.3 pTM=0.377 ipTM=0.192 tol=9.63
2024-07-08 15:01:46,470 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=58.1 pTM=0.379 ipTM=0.2 tol=9.72
2024-07-08 15:02:39,320 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=58 pTM=0.375 ipTM=0.191 tol=8.12
2024-07-08 15:02:39,321 alphafold2_multimer_v3_model_4_seed_000 took 1638.5s (30 recycles)
2024-07-08 15:03:33,236 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=58.7 pTM=0.389 ipTM=0.199
2024-07-08 15:04:26,135 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=58.2 pTM=0.386 ipTM=0.213 tol=24.7
2024-07-08 15:05:19,088 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.8 pTM=0.395 ipTM=0.218 tol=16.5
2024-07-08 15:06:11,981 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=59.9 pTM=0.418 ipTM=0.29 tol=12.8
2024-07-08 15:07:04,912 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=59.5 pTM=0.395 ipTM=0.229 tol=7.42
2024-07-08 15:07:57,807 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=60.2 pTM=0.464 ipTM=0.404 tol=7.41
2024-07-08 15:08:50,696 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=59.9 pTM=0.416 ipTM=0.286 tol=4.5
2024-07-08 15:09:43,598 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.2 pTM=0.446 ipTM=0.353 tol=3.85
2024-07-08 15:10:36,549 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60 pTM=0.406 ipTM=0.254 tol=5.64
2024-07-08 15:11:29,466 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=59.8 pTM=0.425 ipTM=0.293 tol=4.55
2024-07-08 15:12:22,340 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=60 pTM=0.414 ipTM=0.286 tol=5.82
2024-07-08 15:13:15,185 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=59.8 pTM=0.413 ipTM=0.28 tol=5.4
2024-07-08 15:14:08,002 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=59.7 pTM=0.406 ipTM=0.261 tol=3.26
2024-07-08 15:15:00,819 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=60 pTM=0.43 ipTM=0.317 tol=4.03
2024-07-08 15:15:53,676 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=59.8 pTM=0.406 ipTM=0.26 tol=3.49
2024-07-08 15:16:46,538 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=59.9 pTM=0.428 ipTM=0.308 tol=3.24
2024-07-08 15:17:39,420 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=59.7 pTM=0.409 ipTM=0.271 tol=6.54
2024-07-08 15:18:32,332 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=59.7 pTM=0.411 ipTM=0.271 tol=5.39
2024-07-08 15:19:25,241 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=59.4 pTM=0.402 ipTM=0.249 tol=5.51
2024-07-08 15:20:18,159 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=60.1 pTM=0.444 ipTM=0.351 tol=5.66
2024-07-08 15:21:11,035 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=59.6 pTM=0.406 ipTM=0.264 tol=3.59
2024-07-08 15:22:03,957 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=59.5 pTM=0.415 ipTM=0.264 tol=6.29
2024-07-08 15:22:56,826 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=59.8 pTM=0.424 ipTM=0.302 tol=6.73
2024-07-08 15:23:49,735 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=59.5 pTM=0.401 ipTM=0.248 tol=4.94
2024-07-08 15:24:42,627 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=59.7 pTM=0.428 ipTM=0.307 tol=7.09
2024-07-08 15:25:35,502 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=59.4 pTM=0.405 ipTM=0.258 tol=4.59
2024-07-08 15:26:28,414 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=59.4 pTM=0.409 ipTM=0.258 tol=5.3
2024-07-08 15:27:21,271 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=59.8 pTM=0.426 ipTM=0.307 tol=4.29
2024-07-08 15:28:14,160 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=59.4 pTM=0.398 ipTM=0.238 tol=3.04
2024-07-08 15:29:07,045 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=59.1 pTM=0.407 ipTM=0.248 tol=4.13
2024-07-08 15:29:59,899 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=59.6 pTM=0.426 ipTM=0.307 tol=5.88
2024-07-08 15:29:59,900 alphafold2_multimer_v3_model_5_seed_000 took 1639.4s (30 recycles)
2024-07-08 15:30:01,041 reranking models by 'multimer' metric
2024-07-08 15:30:04,946 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 15:31:41,432 Relaxation took 100.4s
2024-07-08 15:31:41,432 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=59.6 pTM=0.426 ipTM=0.307
2024-07-08 15:34:28,055 Relaxation took 166.6s
2024-07-08 15:34:28,055 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=59.7 pTM=0.38 ipTM=0.203
2024-07-08 15:38:25,936 Relaxation took 237.9s
2024-07-08 15:38:25,936 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.2 pTM=0.38 ipTM=0.199
2024-07-08 15:42:03,962 Relaxation took 218.0s
2024-07-08 15:42:03,962 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=58 pTM=0.375 ipTM=0.191
2024-07-08 15:45:50,321 Relaxation took 226.4s
2024-07-08 15:45:50,321 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58 pTM=0.359 ipTM=0.195
2024-07-08 15:45:53,210 Done