2024-07-08 16:58:16,343 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 16:58:16,661 Running on GPU
2024-07-08 16:58:20,538 Found 6 citations for tools or databases
2024-07-08 16:58:20,539 Query 1/1: AT11A_KLRD1 (length 1313)
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2024-07-08 17:09:52,264 Setting max_seq=508, max_extra_seq=2048
2024-07-08 17:13:31,930 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.2 pTM=0.69 ipTM=0.165
2024-07-08 17:14:16,907 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75 pTM=0.692 ipTM=0.253 tol=15.6
2024-07-08 17:15:01,999 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.2 pTM=0.708 ipTM=0.429 tol=2.06
2024-07-08 17:15:47,188 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.5 pTM=0.708 ipTM=0.433 tol=0.776
2024-07-08 17:16:32,484 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.2 pTM=0.714 ipTM=0.449 tol=0.317
2024-07-08 17:16:32,485 alphafold2_multimer_v3_model_1_seed_000 took 394.7s (4 recycles)
2024-07-08 17:17:18,811 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.1 pTM=0.669 ipTM=0.171
2024-07-08 17:18:04,120 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.2 pTM=0.668 ipTM=0.177 tol=6.28
2024-07-08 17:18:49,470 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=73.1 pTM=0.661 ipTM=0.179 tol=2.68
2024-07-08 17:19:34,804 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=73.7 pTM=0.661 ipTM=0.176 tol=3.33
2024-07-08 17:20:20,138 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.6 pTM=0.667 ipTM=0.189 tol=1.21
2024-07-08 17:21:05,505 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.5 pTM=0.665 ipTM=0.193 tol=0.731
2024-07-08 17:21:50,917 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.8 pTM=0.669 ipTM=0.187 tol=0.722
2024-07-08 17:22:36,314 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.7 pTM=0.666 ipTM=0.188 tol=0.767
2024-07-08 17:23:21,745 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=74.6 pTM=0.666 ipTM=0.193 tol=1.09
2024-07-08 17:24:07,216 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=74.8 pTM=0.668 ipTM=0.191 tol=0.401
2024-07-08 17:24:07,217 alphafold2_multimer_v3_model_2_seed_000 took 453.7s (9 recycles)
2024-07-08 17:24:53,618 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.8 pTM=0.662 ipTM=0.176
2024-07-08 17:25:38,970 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.5 pTM=0.669 ipTM=0.194 tol=2.64
2024-07-08 17:26:24,343 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=74.5 pTM=0.67 ipTM=0.216 tol=1.65
2024-07-08 17:27:09,746 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=74.4 pTM=0.668 ipTM=0.219 tol=1.91
2024-07-08 17:27:55,131 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74.9 pTM=0.675 ipTM=0.221 tol=0.919
2024-07-08 17:28:40,510 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.6 pTM=0.671 ipTM=0.222 tol=0.583
2024-07-08 17:29:25,792 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=74.7 pTM=0.672 ipTM=0.22 tol=0.606
2024-07-08 17:30:11,139 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=74.6 pTM=0.669 ipTM=0.223 tol=0.57
2024-07-08 17:30:56,477 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=74.7 pTM=0.674 ipTM=0.221 tol=0.274
2024-07-08 17:30:56,478 alphafold2_multimer_v3_model_3_seed_000 took 408.2s (8 recycles)
2024-07-08 17:31:42,754 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.2 pTM=0.698 ipTM=0.237
2024-07-08 17:32:28,022 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.1 pTM=0.692 ipTM=0.212 tol=2.32
2024-07-08 17:33:13,237 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=73.8 pTM=0.685 ipTM=0.204 tol=1.29
2024-07-08 17:33:58,466 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.3 pTM=0.693 ipTM=0.218 tol=1.32
2024-07-08 17:34:43,714 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=74.8 pTM=0.697 ipTM=0.214 tol=0.988
2024-07-08 17:35:28,940 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=74.6 pTM=0.696 ipTM=0.225 tol=0.766
2024-07-08 17:36:14,251 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=74.8 pTM=0.699 ipTM=0.225 tol=0.791
2024-07-08 17:36:59,537 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=74.2 pTM=0.69 ipTM=0.234 tol=0.811
2024-07-08 17:37:44,756 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=74.5 pTM=0.694 ipTM=0.227 tol=0.495
2024-07-08 17:37:44,757 alphafold2_multimer_v3_model_4_seed_000 took 407.2s (8 recycles)
2024-07-08 17:38:30,969 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=72.8 pTM=0.672 ipTM=0.177
2024-07-08 17:39:16,249 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=72.6 pTM=0.681 ipTM=0.192 tol=4.06
2024-07-08 17:40:01,490 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=73.6 pTM=0.681 ipTM=0.193 tol=1.18
2024-07-08 17:40:46,761 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74 pTM=0.683 ipTM=0.183 tol=0.843
2024-07-08 17:41:32,013 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=74.2 pTM=0.686 ipTM=0.184 tol=0.455
2024-07-08 17:41:32,014 alphafold2_multimer_v3_model_5_seed_000 took 226.2s (4 recycles)
2024-07-08 17:41:33,068 reranking models by 'multimer' metric
2024-07-08 17:41:36,904 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 17:42:25,838 Relaxation took 52.8s
2024-07-08 17:42:25,838 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.2 pTM=0.714 ipTM=0.449
2024-07-08 17:44:13,788 Relaxation took 107.9s
2024-07-08 17:44:13,789 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=74.5 pTM=0.694 ipTM=0.227
2024-07-08 17:46:38,450 Relaxation took 144.7s
2024-07-08 17:46:38,450 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=74.7 pTM=0.674 ipTM=0.221
2024-07-08 17:47:28,221 Relaxation took 49.8s
2024-07-08 17:47:28,221 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.8 pTM=0.668 ipTM=0.191
2024-07-08 17:48:13,378 Relaxation took 45.2s
2024-07-08 17:48:13,379 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=74.2 pTM=0.686 ipTM=0.184
2024-07-08 17:48:16,179 Done