2024-07-08 17:38:04,684 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 17:38:05,010 Running on GPU
2024-07-08 17:38:08,791 Found 6 citations for tools or databases
2024-07-08 17:38:08,791 Query 1/1: ATP6_AT2A3 (length 1225)
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2024-07-08 17:51:01,236 Setting max_seq=508, max_extra_seq=2048
2024-07-08 17:54:26,086 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.1 pTM=0.628 ipTM=0.178
2024-07-08 17:55:02,855 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.9 pTM=0.639 ipTM=0.177 tol=2.6
2024-07-08 17:55:39,766 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.8 pTM=0.626 ipTM=0.183 tol=3.18
2024-07-08 17:56:16,756 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79 pTM=0.623 ipTM=0.188 tol=1.27
2024-07-08 17:56:53,797 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.9 pTM=0.622 ipTM=0.191 tol=0.352
2024-07-08 17:56:53,798 alphafold2_multimer_v3_model_1_seed_000 took 346.9s (4 recycles)
2024-07-08 17:57:31,674 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.3 pTM=0.646 ipTM=0.204
2024-07-08 17:58:08,669 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.8 pTM=0.639 ipTM=0.207 tol=2.15
2024-07-08 17:58:45,659 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.9 pTM=0.631 ipTM=0.209 tol=0.969
2024-07-08 17:59:22,669 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.2 pTM=0.634 ipTM=0.213 tol=0.861
2024-07-08 17:59:59,690 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78 pTM=0.635 ipTM=0.212 tol=0.362
2024-07-08 17:59:59,691 alphafold2_multimer_v3_model_2_seed_000 took 185.0s (4 recycles)
2024-07-08 18:00:37,570 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.5 pTM=0.634 ipTM=0.202
2024-07-08 18:01:14,574 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.9 pTM=0.65 ipTM=0.232 tol=9.35
2024-07-08 18:01:51,569 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77.8 pTM=0.64 ipTM=0.224 tol=2.47
2024-07-08 18:02:28,573 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=77.8 pTM=0.64 ipTM=0.224 tol=5.9
2024-07-08 18:03:05,584 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=77.8 pTM=0.632 ipTM=0.235 tol=1.12
2024-07-08 18:03:42,592 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.6 pTM=0.645 ipTM=0.232 tol=6.84
2024-07-08 18:04:19,605 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=77.7 pTM=0.632 ipTM=0.24 tol=2.72
2024-07-08 18:04:56,631 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=78 pTM=0.647 ipTM=0.232 tol=6.06
2024-07-08 18:05:33,688 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=77.8 pTM=0.63 ipTM=0.236 tol=0.57
2024-07-08 18:06:10,731 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=77.4 pTM=0.647 ipTM=0.233 tol=6.76
2024-07-08 18:06:47,801 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=77.3 pTM=0.629 ipTM=0.237 tol=1.64
2024-07-08 18:07:24,889 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=77.3 pTM=0.647 ipTM=0.232 tol=5.51
2024-07-08 18:08:01,977 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=76.9 pTM=0.628 ipTM=0.24 tol=1.32
2024-07-08 18:08:39,054 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=77.1 pTM=0.649 ipTM=0.235 tol=6.41
2024-07-08 18:09:16,109 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=77.6 pTM=0.631 ipTM=0.237 tol=3.19
2024-07-08 18:09:53,171 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=77.4 pTM=0.647 ipTM=0.234 tol=5.45
2024-07-08 18:10:30,207 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=77.8 pTM=0.629 ipTM=0.238 tol=1.83
2024-07-08 18:11:07,265 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=77.6 pTM=0.644 ipTM=0.235 tol=6.57
2024-07-08 18:11:44,319 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=77.4 pTM=0.63 ipTM=0.241 tol=1.64
2024-07-08 18:12:21,377 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=77.4 pTM=0.651 ipTM=0.239 tol=0.708
2024-07-08 18:12:58,417 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=77.2 pTM=0.632 ipTM=0.24 tol=0.415
2024-07-08 18:12:58,419 alphafold2_multimer_v3_model_3_seed_000 took 777.8s (20 recycles)
2024-07-08 18:13:36,322 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.4 pTM=0.624 ipTM=0.201
2024-07-08 18:14:13,371 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.6 pTM=0.641 ipTM=0.193 tol=5.4
2024-07-08 18:14:50,404 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=76.1 pTM=0.647 ipTM=0.2 tol=2.32
2024-07-08 18:15:27,416 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76 pTM=0.642 ipTM=0.203 tol=1.31
2024-07-08 18:16:04,468 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=76.1 pTM=0.644 ipTM=0.196 tol=1.9
2024-07-08 18:16:41,504 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=76.6 pTM=0.645 ipTM=0.2 tol=7.36
2024-07-08 18:17:18,544 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.9 pTM=0.646 ipTM=0.203 tol=1.91
2024-07-08 18:17:55,561 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.1 pTM=0.645 ipTM=0.205 tol=1.5
2024-07-08 18:18:32,527 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=76.8 pTM=0.646 ipTM=0.205 tol=0.587
2024-07-08 18:19:09,530 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.1 pTM=0.644 ipTM=0.197 tol=1.02
2024-07-08 18:19:46,533 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=76.9 pTM=0.644 ipTM=0.201 tol=1.02
2024-07-08 18:20:23,549 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77 pTM=0.643 ipTM=0.198 tol=1.16
2024-07-08 18:21:00,563 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=76.9 pTM=0.643 ipTM=0.195 tol=1.19
2024-07-08 18:21:37,562 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.1 pTM=0.642 ipTM=0.196 tol=1.57
2024-07-08 18:22:14,610 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77.4 pTM=0.646 ipTM=0.196 tol=1.69
2024-07-08 18:22:51,644 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=77.6 pTM=0.645 ipTM=0.199 tol=1.32
2024-07-08 18:23:28,677 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.3 pTM=0.644 ipTM=0.197 tol=1.38
2024-07-08 18:24:05,651 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=77.1 pTM=0.641 ipTM=0.197 tol=1.4
2024-07-08 18:24:42,652 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77 pTM=0.644 ipTM=0.198 tol=1.18
2024-07-08 18:25:19,663 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=77 pTM=0.641 ipTM=0.196 tol=1.4
2024-07-08 18:25:56,677 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.1 pTM=0.644 ipTM=0.196 tol=1.27
2024-07-08 18:26:33,676 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=77.4 pTM=0.645 ipTM=0.194 tol=1.07
2024-07-08 18:27:10,674 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=77.1 pTM=0.643 ipTM=0.201 tol=1.12
2024-07-08 18:27:47,666 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=77.2 pTM=0.644 ipTM=0.197 tol=1.42
2024-07-08 18:28:24,678 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=77.1 pTM=0.646 ipTM=0.197 tol=1.22
2024-07-08 18:29:01,692 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=77.3 pTM=0.643 ipTM=0.194 tol=1.38
2024-07-08 18:29:38,747 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=77.2 pTM=0.641 ipTM=0.195 tol=1.1
2024-07-08 18:30:15,772 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=77.2 pTM=0.643 ipTM=0.198 tol=1.07
2024-07-08 18:30:52,820 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=77.2 pTM=0.646 ipTM=0.2 tol=1.44
2024-07-08 18:31:29,859 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=77 pTM=0.643 ipTM=0.197 tol=1.92
2024-07-08 18:32:06,909 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=77.4 pTM=0.646 ipTM=0.199 tol=2.21
2024-07-08 18:32:06,912 alphafold2_multimer_v3_model_4_seed_000 took 1147.6s (30 recycles)
2024-07-08 18:32:44,850 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.7 pTM=0.626 ipTM=0.214
2024-07-08 18:33:21,940 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.2 pTM=0.625 ipTM=0.204 tol=6.24
2024-07-08 18:33:59,041 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.7 pTM=0.61 ipTM=0.193 tol=5.61
2024-07-08 18:34:36,130 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.5 pTM=0.625 ipTM=0.195 tol=2.61
2024-07-08 18:35:13,211 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.2 pTM=0.61 ipTM=0.198 tol=0.514
2024-07-08 18:35:50,275 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.4 pTM=0.624 ipTM=0.2 tol=0.636
2024-07-08 18:36:27,357 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.4 pTM=0.612 ipTM=0.204 tol=0.591
2024-07-08 18:37:04,424 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.7 pTM=0.624 ipTM=0.205 tol=0.607
2024-07-08 18:37:41,451 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.5 pTM=0.613 ipTM=0.203 tol=0.601
2024-07-08 18:38:18,455 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.7 pTM=0.623 ipTM=0.204 tol=0.574
2024-07-08 18:38:55,487 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.3 pTM=0.608 ipTM=0.21 tol=0.52
2024-07-08 18:39:32,521 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.2 pTM=0.619 ipTM=0.206 tol=0.43
2024-07-08 18:39:32,522 alphafold2_multimer_v3_model_5_seed_000 took 444.7s (11 recycles)
2024-07-08 18:39:33,420 reranking models by 'multimer' metric
2024-07-08 18:39:34,835 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 18:41:12,278 Relaxation took 98.9s
2024-07-08 18:41:12,278 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.2 pTM=0.632 ipTM=0.24
2024-07-08 18:41:50,910 Relaxation took 38.6s
2024-07-08 18:41:50,910 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78 pTM=0.635 ipTM=0.212
2024-07-08 18:42:49,139 Relaxation took 58.2s
2024-07-08 18:42:49,139 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.2 pTM=0.619 ipTM=0.206
2024-07-08 18:44:09,630 Relaxation took 80.5s
2024-07-08 18:44:09,630 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.4 pTM=0.646 ipTM=0.199
2024-07-08 18:59:41,894 Relaxation took 932.3s
2024-07-08 18:59:41,894 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.9 pTM=0.622 ipTM=0.191
2024-07-08 18:59:44,416 Done