2024-07-08 18:05:16,064 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 18:05:16,386 Running on GPU
2024-07-08 18:05:20,221 Found 6 citations for tools or databases
2024-07-08 18:05:20,221 Query 1/1: B3GN2_O51S1 (length 720)
2024-07-08 18:05:20,704 Sleeping for 9s. Reason: PENDING
2024-07-08 18:05:30,183 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:05:40,590 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:05:50,017 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:05:56,429 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:06:05,863 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:06:15,317 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:06:25,739 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:06:31,181 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:06:37,747 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:06:48,179 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:06:58,602 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:07:22,558 Sleeping for 7s. Reason: PENDING
2024-07-08 18:07:29,958 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:07:39,178 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:07:47,589 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:07:54,017 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:08:02,442 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:08:08,857 Sleeping for 7s. Reason: RUNNING
2024-07-08 18:08:16,287 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:08:25,712 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:08:31,599 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:08:42,037 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:08:52,451 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:08:57,888 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:09:08,766 Setting max_seq=508, max_extra_seq=2048
2024-07-08 18:11:12,498 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.1 pTM=0.737 ipTM=0.632
2024-07-08 18:11:21,932 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.8 pTM=0.63 ipTM=0.412 tol=1.43
2024-07-08 18:11:31,347 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.5 pTM=0.68 ipTM=0.507 tol=0.752
2024-07-08 18:11:40,796 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.8 pTM=0.614 ipTM=0.379 tol=0.702
2024-07-08 18:11:50,238 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.2 pTM=0.642 ipTM=0.432 tol=0.521
2024-07-08 18:11:59,713 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.9 pTM=0.605 ipTM=0.355 tol=0.6
2024-07-08 18:12:09,197 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78.1 pTM=0.62 ipTM=0.391 tol=0.338
2024-07-08 18:12:09,198 alphafold2_multimer_v3_model_1_seed_000 took 174.9s (6 recycles)
2024-07-08 18:12:19,047 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.3 pTM=0.722 ipTM=0.584
2024-07-08 18:12:28,564 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.3 pTM=0.688 ipTM=0.538 tol=1.51
2024-07-08 18:12:38,068 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.8 pTM=0.7 ipTM=0.549 tol=1.47
2024-07-08 18:12:47,584 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.2 pTM=0.637 ipTM=0.4 tol=1.49
2024-07-08 18:12:57,092 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.4 pTM=0.657 ipTM=0.478 tol=0.812
2024-07-08 18:13:06,612 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79 pTM=0.634 ipTM=0.405 tol=0.514
2024-07-08 18:13:16,134 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=79.1 pTM=0.632 ipTM=0.417 tol=0.719
2024-07-08 18:13:25,661 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.8 pTM=0.614 ipTM=0.359 tol=0.65
2024-07-08 18:13:35,181 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.6 pTM=0.616 ipTM=0.378 tol=0.841
2024-07-08 18:13:44,695 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.5 pTM=0.607 ipTM=0.347 tol=0.586
2024-07-08 18:13:54,207 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=78.1 pTM=0.602 ipTM=0.349 tol=0.835
2024-07-08 18:14:03,740 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=78.2 pTM=0.591 ipTM=0.314 tol=0.852
2024-07-08 18:14:13,273 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=78.1 pTM=0.581 ipTM=0.299 tol=0.91
2024-07-08 18:14:22,795 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=77.9 pTM=0.573 ipTM=0.28 tol=0.589
2024-07-08 18:14:32,329 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=78 pTM=0.583 ipTM=0.307 tol=0.535
2024-07-08 18:14:41,872 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=78.1 pTM=0.576 ipTM=0.294 tol=0.672
2024-07-08 18:14:51,400 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=77.7 pTM=0.566 ipTM=0.267 tol=0.609
2024-07-08 18:15:00,946 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=78.1 pTM=0.565 ipTM=0.269 tol=0.979
2024-07-08 18:15:10,512 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=78 pTM=0.566 ipTM=0.265 tol=1.02
2024-07-08 18:15:20,036 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=78.1 pTM=0.577 ipTM=0.291 tol=2.2
2024-07-08 18:15:29,562 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=77.9 pTM=0.578 ipTM=0.292 tol=1.37
2024-07-08 18:15:39,091 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=77.6 pTM=0.568 ipTM=0.279 tol=0.75
2024-07-08 18:15:48,629 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=77.6 pTM=0.584 ipTM=0.306 tol=0.91
2024-07-08 18:15:58,175 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=77.7 pTM=0.57 ipTM=0.271 tol=0.874
2024-07-08 18:16:07,711 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=77.5 pTM=0.561 ipTM=0.26 tol=0.688
2024-07-08 18:16:17,246 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=77.8 pTM=0.563 ipTM=0.259 tol=0.99
2024-07-08 18:16:26,789 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=77.8 pTM=0.561 ipTM=0.26 tol=1.38
2024-07-08 18:16:36,334 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=77.9 pTM=0.557 ipTM=0.247 tol=0.864
2024-07-08 18:16:45,874 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=77.4 pTM=0.556 ipTM=0.252 tol=1.06
2024-07-08 18:16:55,417 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=77.7 pTM=0.566 ipTM=0.271 tol=0.838
2024-07-08 18:17:04,961 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=77.7 pTM=0.567 ipTM=0.273 tol=0.858
2024-07-08 18:17:04,961 alphafold2_multimer_v3_model_2_seed_000 took 295.4s (30 recycles)
2024-07-08 18:17:14,826 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.9 pTM=0.736 ipTM=0.651
2024-07-08 18:17:24,357 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.1 pTM=0.659 ipTM=0.459 tol=1.59
2024-07-08 18:17:33,897 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.5 pTM=0.658 ipTM=0.461 tol=0.814
2024-07-08 18:17:43,419 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.4 pTM=0.632 ipTM=0.419 tol=0.49
2024-07-08 18:17:43,420 alphafold2_multimer_v3_model_3_seed_000 took 38.1s (3 recycles)
2024-07-08 18:17:53,317 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.9 pTM=0.692 ipTM=0.53
2024-07-08 18:18:02,865 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.2 pTM=0.683 ipTM=0.541 tol=1.65
2024-07-08 18:18:12,397 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.4 pTM=0.63 ipTM=0.42 tol=1.08
2024-07-08 18:18:21,940 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.2 pTM=0.614 ipTM=0.406 tol=0.553
2024-07-08 18:18:31,478 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.1 pTM=0.641 ipTM=0.451 tol=0.85
2024-07-08 18:18:41,016 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.6 pTM=0.597 ipTM=0.378 tol=0.996
2024-07-08 18:18:50,545 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.8 pTM=0.627 ipTM=0.427 tol=1.13
2024-07-08 18:19:00,076 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.4 pTM=0.591 ipTM=0.359 tol=1.18
2024-07-08 18:19:09,632 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.8 pTM=0.622 ipTM=0.408 tol=0.936
2024-07-08 18:19:19,171 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.6 pTM=0.603 ipTM=0.379 tol=0.707
2024-07-08 18:19:28,709 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.6 pTM=0.623 ipTM=0.412 tol=0.85
2024-07-08 18:19:38,263 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.3 pTM=0.596 ipTM=0.365 tol=1.19
2024-07-08 18:19:47,787 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=77.8 pTM=0.619 ipTM=0.404 tol=0.84
2024-07-08 18:19:57,325 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.2 pTM=0.592 ipTM=0.353 tol=0.67
2024-07-08 18:20:06,857 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77.5 pTM=0.618 ipTM=0.398 tol=0.688
2024-07-08 18:20:16,395 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=77.3 pTM=0.593 ipTM=0.358 tol=0.866
2024-07-08 18:20:25,941 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.7 pTM=0.636 ipTM=0.442 tol=0.563
2024-07-08 18:20:35,474 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=77.4 pTM=0.6 ipTM=0.376 tol=0.73
2024-07-08 18:20:45,002 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77.6 pTM=0.625 ipTM=0.423 tol=0.748
2024-07-08 18:20:54,524 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=77.1 pTM=0.603 ipTM=0.387 tol=0.903
2024-07-08 18:21:04,045 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.6 pTM=0.619 ipTM=0.433 tol=0.676
2024-07-08 18:21:13,571 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=77.7 pTM=0.625 ipTM=0.423 tol=0.788
2024-07-08 18:21:23,093 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=77.1 pTM=0.598 ipTM=0.377 tol=0.771
2024-07-08 18:21:32,624 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=77.5 pTM=0.619 ipTM=0.406 tol=0.779
2024-07-08 18:21:42,149 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=77.4 pTM=0.61 ipTM=0.41 tol=0.727
2024-07-08 18:21:51,678 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=77.6 pTM=0.621 ipTM=0.41 tol=0.785
2024-07-08 18:22:01,207 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=77.4 pTM=0.6 ipTM=0.39 tol=0.818
2024-07-08 18:22:10,730 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=77.8 pTM=0.624 ipTM=0.414 tol=0.979
2024-07-08 18:22:20,258 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=77.4 pTM=0.605 ipTM=0.379 tol=1.14
2024-07-08 18:22:29,779 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=77.2 pTM=0.6 ipTM=0.352 tol=1.29
2024-07-08 18:22:39,321 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=77.4 pTM=0.607 ipTM=0.397 tol=1.18
2024-07-08 18:22:39,321 alphafold2_multimer_v3_model_4_seed_000 took 295.6s (30 recycles)
2024-07-08 18:22:49,229 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.8 pTM=0.691 ipTM=0.534
2024-07-08 18:22:58,777 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.1 pTM=0.709 ipTM=0.601 tol=4.42
2024-07-08 18:23:08,339 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78 pTM=0.705 ipTM=0.572 tol=1.13
2024-07-08 18:23:17,885 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78 pTM=0.681 ipTM=0.539 tol=0.847
2024-07-08 18:23:27,426 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.6 pTM=0.71 ipTM=0.586 tol=0.938
2024-07-08 18:23:36,973 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.4 pTM=0.688 ipTM=0.55 tol=0.669
2024-07-08 18:23:46,503 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.4 pTM=0.696 ipTM=0.562 tol=0.766
2024-07-08 18:23:56,039 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.3 pTM=0.679 ipTM=0.539 tol=1.76
2024-07-08 18:24:05,573 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.4 pTM=0.69 ipTM=0.544 tol=0.608
2024-07-08 18:24:15,117 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.4 pTM=0.692 ipTM=0.557 tol=1.05
2024-07-08 18:24:24,654 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.3 pTM=0.694 ipTM=0.556 tol=1.67
2024-07-08 18:24:34,193 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.4 pTM=0.683 ipTM=0.54 tol=1.21
2024-07-08 18:24:43,728 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.2 pTM=0.681 ipTM=0.535 tol=0.661
2024-07-08 18:24:53,270 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.2 pTM=0.679 ipTM=0.528 tol=0.707
2024-07-08 18:25:02,802 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=78.2 pTM=0.676 ipTM=0.528 tol=0.831
2024-07-08 18:25:12,339 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78 pTM=0.669 ipTM=0.512 tol=0.815
2024-07-08 18:25:21,874 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=77.9 pTM=0.673 ipTM=0.522 tol=0.71
2024-07-08 18:25:31,422 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.2 pTM=0.673 ipTM=0.525 tol=0.847
2024-07-08 18:25:40,959 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.1 pTM=0.681 ipTM=0.533 tol=1.01
2024-07-08 18:25:50,483 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=77.7 pTM=0.672 ipTM=0.532 tol=0.613
2024-07-08 18:26:00,019 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.2 pTM=0.691 ipTM=0.555 tol=0.878
2024-07-08 18:26:09,549 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=77.9 pTM=0.677 ipTM=0.53 tol=1.36
2024-07-08 18:26:19,070 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=77.8 pTM=0.68 ipTM=0.533 tol=1.11
2024-07-08 18:26:28,594 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=77.8 pTM=0.678 ipTM=0.536 tol=1.36
2024-07-08 18:26:38,117 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=78 pTM=0.686 ipTM=0.544 tol=0.737
2024-07-08 18:26:47,643 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=78.1 pTM=0.684 ipTM=0.538 tol=0.732
2024-07-08 18:26:57,165 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=78 pTM=0.675 ipTM=0.53 tol=1.1
2024-07-08 18:27:06,700 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=78 pTM=0.679 ipTM=0.541 tol=0.82
2024-07-08 18:27:16,227 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=78.1 pTM=0.688 ipTM=0.552 tol=0.886
2024-07-08 18:27:25,756 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=77.9 pTM=0.681 ipTM=0.542 tol=0.942
2024-07-08 18:27:35,290 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=78.2 pTM=0.684 ipTM=0.546 tol=0.887
2024-07-08 18:27:35,291 alphafold2_multimer_v3_model_5_seed_000 took 295.6s (30 recycles)
2024-07-08 18:27:35,617 reranking models by 'multimer' metric
2024-07-08 18:27:39,252 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 18:28:03,514 Relaxation took 27.9s
2024-07-08 18:28:03,515 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.2 pTM=0.684 ipTM=0.546
2024-07-08 18:28:28,148 Relaxation took 24.6s
2024-07-08 18:28:28,148 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.4 pTM=0.632 ipTM=0.419
2024-07-08 18:28:49,735 Relaxation took 21.6s
2024-07-08 18:28:49,735 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.4 pTM=0.607 ipTM=0.397
2024-07-08 18:29:17,053 Relaxation took 27.3s
2024-07-08 18:29:17,053 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.1 pTM=0.62 ipTM=0.391
2024-07-08 18:29:38,571 Relaxation took 21.5s
2024-07-08 18:29:38,571 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=77.7 pTM=0.567 ipTM=0.273
2024-07-08 18:29:40,011 Done