2024-07-08 18:08:57,548 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 18:08:57,871 Running on GPU
2024-07-08 18:09:02,186 Found 6 citations for tools or databases
2024-07-08 18:09:02,186 Query 1/1: B3GN3_APH1B (length 629)
2024-07-08 18:09:03,722 Sleeping for 5s. Reason: PENDING
2024-07-08 18:09:09,148 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:09:14,569 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:09:19,985 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:09:26,425 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:09:34,860 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:09:40,266 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:09:51,717 Sleeping for 7s. Reason: PENDING
2024-07-08 18:09:59,132 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:10:07,565 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:10:13,221 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:10:19,641 Sleeping for 7s. Reason: RUNNING
2024-07-08 18:10:27,057 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:10:37,693 Setting max_seq=508, max_extra_seq=2048
2024-07-08 18:13:30,599 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.2 pTM=0.525 ipTM=0.185
2024-07-08 18:13:38,584 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.9 pTM=0.542 ipTM=0.226 tol=6.84
2024-07-08 18:13:46,569 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.6 pTM=0.543 ipTM=0.223 tol=0.855
2024-07-08 18:13:54,581 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.6 pTM=0.547 ipTM=0.23 tol=0.801
2024-07-08 18:14:02,583 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.7 pTM=0.546 ipTM=0.233 tol=0.374
2024-07-08 18:14:02,583 alphafold2_multimer_v3_model_1_seed_000 took 199.6s (4 recycles)
2024-07-08 18:14:10,872 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.9 pTM=0.547 ipTM=0.174
2024-07-08 18:14:18,909 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.9 pTM=0.552 ipTM=0.192 tol=3.96
2024-07-08 18:14:26,945 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.9 pTM=0.551 ipTM=0.195 tol=0.87
2024-07-08 18:14:34,988 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80 pTM=0.559 ipTM=0.209 tol=0.875
2024-07-08 18:14:43,031 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.9 pTM=0.558 ipTM=0.209 tol=0.447
2024-07-08 18:14:43,032 alphafold2_multimer_v3_model_2_seed_000 took 40.2s (4 recycles)
2024-07-08 18:14:51,355 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.7 pTM=0.545 ipTM=0.17
2024-07-08 18:14:59,445 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.1 pTM=0.541 ipTM=0.155 tol=8.43
2024-07-08 18:15:07,510 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.3 pTM=0.553 ipTM=0.192 tol=10.8
2024-07-08 18:15:15,579 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.4 pTM=0.557 ipTM=0.201 tol=2.36
2024-07-08 18:15:23,647 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.4 pTM=0.558 ipTM=0.205 tol=1.82
2024-07-08 18:15:31,716 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.5 pTM=0.559 ipTM=0.203 tol=1.13
2024-07-08 18:15:39,785 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.3 pTM=0.557 ipTM=0.202 tol=1
2024-07-08 18:15:47,857 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.4 pTM=0.561 ipTM=0.213 tol=1.12
2024-07-08 18:15:55,933 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.6 pTM=0.56 ipTM=0.205 tol=1.54
2024-07-08 18:16:04,008 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.4 pTM=0.558 ipTM=0.206 tol=0.545
2024-07-08 18:16:12,087 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.2 pTM=0.556 ipTM=0.204 tol=0.429
2024-07-08 18:16:12,088 alphafold2_multimer_v3_model_3_seed_000 took 88.8s (10 recycles)
2024-07-08 18:16:20,451 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.5 pTM=0.538 ipTM=0.146
2024-07-08 18:16:28,565 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.1 pTM=0.539 ipTM=0.153 tol=4.86
2024-07-08 18:16:36,667 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.542 ipTM=0.166 tol=1.91
2024-07-08 18:16:44,769 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.8 pTM=0.545 ipTM=0.172 tol=1.54
2024-07-08 18:16:52,864 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.8 pTM=0.547 ipTM=0.176 tol=1.63
2024-07-08 18:17:00,957 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.8 pTM=0.548 ipTM=0.178 tol=0.861
2024-07-08 18:17:09,057 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.8 pTM=0.547 ipTM=0.176 tol=1.27
2024-07-08 18:17:17,158 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.8 pTM=0.549 ipTM=0.177 tol=0.709
2024-07-08 18:17:25,267 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.1 pTM=0.548 ipTM=0.171 tol=0.673
2024-07-08 18:17:33,375 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.8 pTM=0.548 ipTM=0.176 tol=0.772
2024-07-08 18:17:41,472 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.5 pTM=0.545 ipTM=0.171 tol=0.597
2024-07-08 18:17:49,580 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.8 pTM=0.544 ipTM=0.165 tol=0.707
2024-07-08 18:17:57,682 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.8 pTM=0.549 ipTM=0.177 tol=1.1
2024-07-08 18:18:05,778 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.6 pTM=0.548 ipTM=0.177 tol=0.65
2024-07-08 18:18:13,876 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.8 pTM=0.548 ipTM=0.178 tol=0.848
2024-07-08 18:18:21,968 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.5 pTM=0.546 ipTM=0.176 tol=0.524
2024-07-08 18:18:30,068 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.6 pTM=0.547 ipTM=0.175 tol=0.475
2024-07-08 18:18:30,068 alphafold2_multimer_v3_model_4_seed_000 took 137.7s (16 recycles)
2024-07-08 18:18:38,440 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.2 pTM=0.539 ipTM=0.161
2024-07-08 18:18:46,567 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.8 pTM=0.544 ipTM=0.167 tol=4.22
2024-07-08 18:18:54,685 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.5 pTM=0.541 ipTM=0.167 tol=1.3
2024-07-08 18:19:02,802 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.6 pTM=0.543 ipTM=0.172 tol=1.13
2024-07-08 18:19:10,913 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.5 pTM=0.543 ipTM=0.174 tol=0.742
2024-07-08 18:19:19,027 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.8 pTM=0.542 ipTM=0.171 tol=0.758
2024-07-08 18:19:27,159 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.6 pTM=0.539 ipTM=0.163 tol=0.845
2024-07-08 18:19:35,292 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.6 pTM=0.533 ipTM=0.148 tol=2.63
2024-07-08 18:19:43,429 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.8 pTM=0.531 ipTM=0.143 tol=10.2
2024-07-08 18:19:51,551 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.5 pTM=0.539 ipTM=0.166 tol=5.02
2024-07-08 18:19:59,668 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.5 pTM=0.548 ipTM=0.192 tol=3.35
2024-07-08 18:20:07,780 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.2 pTM=0.553 ipTM=0.203 tol=2.71
2024-07-08 18:20:15,887 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.3 pTM=0.555 ipTM=0.211 tol=1.29
2024-07-08 18:20:23,990 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.2 pTM=0.556 ipTM=0.212 tol=0.863
2024-07-08 18:20:32,089 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.3 pTM=0.559 ipTM=0.218 tol=0.563
2024-07-08 18:20:40,187 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.1 pTM=0.557 ipTM=0.214 tol=0.556
2024-07-08 18:20:48,285 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.1 pTM=0.558 ipTM=0.218 tol=0.335
2024-07-08 18:20:48,285 alphafold2_multimer_v3_model_5_seed_000 took 138.0s (16 recycles)
2024-07-08 18:20:48,545 reranking models by 'multimer' metric
2024-07-08 18:20:49,357 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 18:21:08,633 Relaxation took 20.1s
2024-07-08 18:21:08,633 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.7 pTM=0.546 ipTM=0.233
2024-07-08 18:21:23,932 Relaxation took 15.3s
2024-07-08 18:21:23,932 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.1 pTM=0.558 ipTM=0.218
2024-07-08 18:21:52,048 Relaxation took 28.1s
2024-07-08 18:21:52,048 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.9 pTM=0.558 ipTM=0.209
2024-07-08 18:22:12,028 Relaxation took 20.0s
2024-07-08 18:22:12,029 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.2 pTM=0.556 ipTM=0.204
2024-07-08 18:22:45,871 Relaxation took 33.8s
2024-07-08 18:22:45,871 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.6 pTM=0.547 ipTM=0.175
2024-07-08 18:22:47,082 Done