2024-07-08 18:22:58,884 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 18:22:59,198 Running on GPU
2024-07-08 18:23:03,285 Found 6 citations for tools or databases
2024-07-08 18:23:03,285 Query 1/1: BACE1_RHG39 (length 1584)
2024-07-08 18:23:03,743 Sleeping for 5s. Reason: PENDING
2024-07-08 18:23:09,157 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:23:14,561 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:23:20,971 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:23:30,397 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:23:39,636 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:23:45,053 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:23:54,476 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:24:03,899 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:24:13,319 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:24:20,243 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:24:25,679 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:24:32,098 Sleeping for 7s. Reason: RUNNING
2024-07-08 18:24:39,581 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:24:50,011 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:25:00,431 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:25:10,859 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:25:21,295 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:25:26,702 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:25:32,127 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:25:47,234 Sleeping for 6s. Reason: PENDING
2024-07-08 18:25:53,665 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:26:02,081 Sleeping for 7s. Reason: RUNNING
2024-07-08 18:26:09,494 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:26:19,919 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:26:25,340 Sleeping for 5s. Reason: RUNNING
2024-07-08 18:26:30,971 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:26:39,431 Sleeping for 10s. Reason: RUNNING
2024-07-08 18:26:49,859 Sleeping for 7s. Reason: RUNNING
2024-07-08 18:26:57,263 Sleeping for 6s. Reason: RUNNING
2024-07-08 18:27:03,693 Sleeping for 9s. Reason: RUNNING
2024-07-08 18:27:13,115 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:27:21,528 Sleeping for 8s. Reason: RUNNING
2024-07-08 18:27:35,737 Setting max_seq=508, max_extra_seq=2048
2024-07-08 18:30:49,051 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=53.2 pTM=0.375 ipTM=0.405
2024-07-08 18:32:02,782 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=54.1 pTM=0.379 ipTM=0.31 tol=17.8
2024-07-08 18:33:16,512 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=53.8 pTM=0.382 ipTM=0.475 tol=12.8
2024-07-08 18:34:30,312 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.9 pTM=0.379 ipTM=0.49 tol=10.1
2024-07-08 18:35:44,114 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.9 pTM=0.378 ipTM=0.437 tol=9.03
2024-07-08 18:36:57,931 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.9 pTM=0.375 ipTM=0.325 tol=6.71
2024-07-08 18:38:11,767 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=53.8 pTM=0.375 ipTM=0.273 tol=11.2
2024-07-08 18:39:25,584 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54.3 pTM=0.382 ipTM=0.583 tol=6.07
2024-07-08 18:40:39,441 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54.3 pTM=0.381 ipTM=0.584 tol=6.36
2024-07-08 18:41:53,257 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.6 pTM=0.383 ipTM=0.603 tol=4.93
2024-07-08 18:43:07,093 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=54.7 pTM=0.385 ipTM=0.588 tol=8.89
2024-07-08 18:44:20,897 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.7 pTM=0.383 ipTM=0.54 tol=8.91
2024-07-08 18:45:34,724 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=54.7 pTM=0.383 ipTM=0.511 tol=5.94
2024-07-08 18:46:48,579 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.8 pTM=0.381 ipTM=0.513 tol=6.11
2024-07-08 18:48:02,431 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.6 pTM=0.38 ipTM=0.507 tol=6.66
2024-07-08 18:49:16,326 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.7 pTM=0.379 ipTM=0.51 tol=6.54
2024-07-08 18:50:30,151 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=54.5 pTM=0.38 ipTM=0.506 tol=8.38
2024-07-08 18:51:43,963 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.7 pTM=0.38 ipTM=0.509 tol=11.7
2024-07-08 18:52:57,809 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.6 pTM=0.379 ipTM=0.505 tol=8.29
2024-07-08 18:54:11,668 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.6 pTM=0.377 ipTM=0.487 tol=3.62
2024-07-08 18:55:25,499 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.4 pTM=0.377 ipTM=0.505 tol=3.77
2024-07-08 18:56:39,325 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=54.6 pTM=0.378 ipTM=0.492 tol=3.54
2024-07-08 18:57:53,162 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.4 pTM=0.379 ipTM=0.496 tol=5.24
2024-07-08 18:59:06,944 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.6 pTM=0.378 ipTM=0.478 tol=4.4
2024-07-08 19:00:20,708 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.7 pTM=0.385 ipTM=0.545 tol=5.3
2024-07-08 19:01:34,515 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.6 pTM=0.385 ipTM=0.5 tol=4.08
2024-07-08 19:02:48,337 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.6 pTM=0.382 ipTM=0.49 tol=3.15
2024-07-08 19:04:02,116 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=54.5 pTM=0.384 ipTM=0.496 tol=4.53
2024-07-08 19:05:15,926 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=54.5 pTM=0.382 ipTM=0.506 tol=3.48
2024-07-08 19:06:29,714 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.8 pTM=0.383 ipTM=0.506 tol=4.59
2024-07-08 19:07:43,521 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=54.6 pTM=0.383 ipTM=0.513 tol=3.62
2024-07-08 19:07:43,523 alphafold2_multimer_v3_model_1_seed_000 took 2401.5s (30 recycles)
2024-07-08 19:08:58,861 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=54.2 pTM=0.383 ipTM=0.586
2024-07-08 19:10:12,802 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=55 pTM=0.374 ipTM=0.313 tol=16
2024-07-08 19:11:26,733 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=55.5 pTM=0.401 ipTM=0.632 tol=20.8
2024-07-08 19:12:40,649 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=56 pTM=0.389 ipTM=0.546 tol=14.1
2024-07-08 19:13:54,586 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=56 pTM=0.385 ipTM=0.504 tol=10.3
2024-07-08 19:15:08,515 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55.9 pTM=0.384 ipTM=0.472 tol=7.07
2024-07-08 19:16:22,436 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=55.8 pTM=0.383 ipTM=0.458 tol=4.3
2024-07-08 19:17:36,373 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=56 pTM=0.385 ipTM=0.476 tol=5.73
2024-07-08 19:18:50,285 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=55.8 pTM=0.384 ipTM=0.486 tol=6.96
2024-07-08 19:20:04,202 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=55.8 pTM=0.383 ipTM=0.475 tol=6.8
2024-07-08 19:21:18,116 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=55.8 pTM=0.382 ipTM=0.466 tol=4.38
2024-07-08 19:22:32,047 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=55.7 pTM=0.384 ipTM=0.445 tol=5.12
2024-07-08 19:23:45,988 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=55.8 pTM=0.383 ipTM=0.454 tol=5.79
2024-07-08 19:24:59,900 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=55.7 pTM=0.383 ipTM=0.438 tol=8.9
2024-07-08 19:26:13,789 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=55.8 pTM=0.385 ipTM=0.458 tol=6.06
2024-07-08 19:27:27,649 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=55.7 pTM=0.386 ipTM=0.456 tol=4.21
2024-07-08 19:28:41,499 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=55.4 pTM=0.384 ipTM=0.408 tol=3.9
2024-07-08 19:29:55,396 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=55.5 pTM=0.384 ipTM=0.424 tol=4.62
2024-07-08 19:31:09,281 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=55.3 pTM=0.382 ipTM=0.434 tol=4.15
2024-07-08 19:32:23,179 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=55.5 pTM=0.382 ipTM=0.429 tol=3.69
2024-07-08 19:33:37,070 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=55.6 pTM=0.381 ipTM=0.46 tol=3.78
2024-07-08 19:34:50,966 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55.6 pTM=0.384 ipTM=0.455 tol=3.82
2024-07-08 19:36:04,841 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=55.4 pTM=0.381 ipTM=0.423 tol=4.99
2024-07-08 19:37:18,723 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=55.4 pTM=0.38 ipTM=0.459 tol=5.95
2024-07-08 19:38:32,596 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=55.5 pTM=0.382 ipTM=0.467 tol=6.86
2024-07-08 19:39:46,454 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.5 pTM=0.382 ipTM=0.461 tol=3.81
2024-07-08 19:41:00,299 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55.5 pTM=0.381 ipTM=0.44 tol=3.63
2024-07-08 19:42:14,147 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=55.6 pTM=0.382 ipTM=0.483 tol=3.81
2024-07-08 19:43:27,999 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.8 pTM=0.384 ipTM=0.45 tol=4.55
2024-07-08 19:44:41,850 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.7 pTM=0.383 ipTM=0.451 tol=5.18
2024-07-08 19:45:55,730 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=55.9 pTM=0.384 ipTM=0.453 tol=4.12
2024-07-08 19:45:55,731 alphafold2_multimer_v3_model_2_seed_000 took 2290.7s (30 recycles)
2024-07-08 19:47:11,356 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=54.1 pTM=0.372 ipTM=0.409
2024-07-08 19:48:25,514 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=54.7 pTM=0.384 ipTM=0.535 tol=16.6
2024-07-08 19:49:39,722 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=54.8 pTM=0.37 ipTM=0.53 tol=13.9
2024-07-08 19:50:53,952 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=55.2 pTM=0.37 ipTM=0.616 tol=8.53
2024-07-08 19:52:08,167 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=55.2 pTM=0.369 ipTM=0.624 tol=12.7
2024-07-08 19:53:22,305 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.4 pTM=0.375 ipTM=0.646 tol=9.15
2024-07-08 19:54:36,474 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.7 pTM=0.376 ipTM=0.639 tol=7.42
2024-07-08 19:55:50,583 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.8 pTM=0.378 ipTM=0.664 tol=5.02
2024-07-08 19:57:04,721 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55.8 pTM=0.375 ipTM=0.651 tol=3.9
2024-07-08 19:58:18,843 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.9 pTM=0.377 ipTM=0.66 tol=4.54
2024-07-08 19:59:33,007 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.9 pTM=0.377 ipTM=0.659 tol=4.88
2024-07-08 20:00:47,174 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.9 pTM=0.378 ipTM=0.665 tol=4.93
2024-07-08 20:02:01,338 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=56 pTM=0.377 ipTM=0.663 tol=4.73
2024-07-08 20:03:15,513 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=56 pTM=0.377 ipTM=0.664 tol=7.55
2024-07-08 20:04:29,730 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.9 pTM=0.376 ipTM=0.659 tol=7.41
2024-07-08 20:05:43,922 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=56 pTM=0.378 ipTM=0.666 tol=6.89
2024-07-08 20:06:58,100 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.8 pTM=0.377 ipTM=0.661 tol=5.48
2024-07-08 20:08:12,282 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=56 pTM=0.378 ipTM=0.665 tol=4.9
2024-07-08 20:09:26,494 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=56 pTM=0.376 ipTM=0.653 tol=6.11
2024-07-08 20:10:40,727 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=56.2 pTM=0.378 ipTM=0.656 tol=5.51
2024-07-08 20:11:54,883 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=56.1 pTM=0.377 ipTM=0.654 tol=5.6
2024-07-08 20:13:09,052 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=56.1 pTM=0.379 ipTM=0.667 tol=5.84
2024-07-08 20:14:23,180 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=56 pTM=0.379 ipTM=0.658 tol=4.41
2024-07-08 20:15:37,312 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=56.2 pTM=0.38 ipTM=0.675 tol=3.6
2024-07-08 20:16:51,451 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=56 pTM=0.379 ipTM=0.671 tol=4.35
2024-07-08 20:18:05,615 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=56 pTM=0.38 ipTM=0.667 tol=4.04
2024-07-08 20:19:19,747 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.9 pTM=0.378 ipTM=0.661 tol=3.39
2024-07-08 20:20:33,860 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.9 pTM=0.378 ipTM=0.667 tol=4.02
2024-07-08 20:21:48,019 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=56 pTM=0.377 ipTM=0.656 tol=4.49
2024-07-08 20:23:02,125 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=56 pTM=0.377 ipTM=0.662 tol=4.66
2024-07-08 20:24:16,260 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=56 pTM=0.375 ipTM=0.651 tol=3.83
2024-07-08 20:24:16,261 alphafold2_multimer_v3_model_3_seed_000 took 2299.0s (30 recycles)
2024-07-08 20:25:31,729 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=51.9 pTM=0.398 ipTM=0.538
2024-07-08 20:26:45,864 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=53 pTM=0.381 ipTM=0.511 tol=18.3
2024-07-08 20:28:00,009 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=53.3 pTM=0.386 ipTM=0.499 tol=11.5
2024-07-08 20:29:14,165 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=53.2 pTM=0.381 ipTM=0.451 tol=10.3
2024-07-08 20:30:28,345 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=53.1 pTM=0.379 ipTM=0.564 tol=6.56
2024-07-08 20:31:42,504 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=53.2 pTM=0.378 ipTM=0.566 tol=8.77
2024-07-08 20:32:56,639 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=53.3 pTM=0.379 ipTM=0.565 tol=7.92
2024-07-08 20:34:10,810 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=53.3 pTM=0.379 ipTM=0.569 tol=6.47
2024-07-08 20:35:24,974 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=53.1 pTM=0.378 ipTM=0.544 tol=5.45
2024-07-08 20:36:39,074 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=53.5 pTM=0.381 ipTM=0.555 tol=5.76
2024-07-08 20:37:53,172 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=53.2 pTM=0.38 ipTM=0.547 tol=4.8
2024-07-08 20:39:07,283 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=53.3 pTM=0.38 ipTM=0.546 tol=4.91
2024-07-08 20:40:21,392 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=53.3 pTM=0.38 ipTM=0.573 tol=4.25
2024-07-08 20:41:35,489 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=53.2 pTM=0.38 ipTM=0.562 tol=4.65
2024-07-08 20:42:49,546 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=53.2 pTM=0.377 ipTM=0.553 tol=4.66
2024-07-08 20:44:03,618 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=53.7 pTM=0.377 ipTM=0.53 tol=6.06
2024-07-08 20:45:17,702 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=53.3 pTM=0.375 ipTM=0.557 tol=5.09
2024-07-08 20:46:31,782 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=53.6 pTM=0.377 ipTM=0.564 tol=3.95
2024-07-08 20:47:45,861 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=53.9 pTM=0.378 ipTM=0.579 tol=4.77
2024-07-08 20:48:59,918 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=53.7 pTM=0.376 ipTM=0.562 tol=3.84
2024-07-08 20:50:13,979 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=53.8 pTM=0.377 ipTM=0.576 tol=4.52
2024-07-08 20:51:28,047 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=53.8 pTM=0.376 ipTM=0.589 tol=3.51
2024-07-08 20:52:42,143 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=53.5 pTM=0.375 ipTM=0.58 tol=4.1
2024-07-08 20:53:56,197 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=53.7 pTM=0.375 ipTM=0.585 tol=3.01
2024-07-08 20:55:10,295 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=53.8 pTM=0.375 ipTM=0.568 tol=3.49
2024-07-08 20:56:24,414 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=53.8 pTM=0.374 ipTM=0.561 tol=3.44
2024-07-08 20:57:38,529 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=53.7 pTM=0.373 ipTM=0.548 tol=3.66
2024-07-08 20:58:52,593 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=53.6 pTM=0.375 ipTM=0.554 tol=4.06
2024-07-08 21:00:06,716 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=53.6 pTM=0.374 ipTM=0.551 tol=2.99
2024-07-08 21:01:20,783 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=53.9 pTM=0.376 ipTM=0.551 tol=4.21
2024-07-08 21:02:34,853 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=53.6 pTM=0.375 ipTM=0.547 tol=4.29
2024-07-08 21:02:34,855 alphafold2_multimer_v3_model_4_seed_000 took 2297.1s (30 recycles)
2024-07-08 21:03:50,382 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=52.4 pTM=0.371 ipTM=0.207
2024-07-08 21:05:04,520 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=53.8 pTM=0.386 ipTM=0.64 tol=20.1
2024-07-08 21:06:18,644 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=54.3 pTM=0.383 ipTM=0.479 tol=15.5
2024-07-08 21:07:32,736 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=54.5 pTM=0.386 ipTM=0.563 tol=12.8
2024-07-08 21:08:46,850 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=54.8 pTM=0.385 ipTM=0.491 tol=12.6
2024-07-08 21:10:00,999 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=55.1 pTM=0.385 ipTM=0.558 tol=8.59
2024-07-08 21:11:15,091 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55 pTM=0.387 ipTM=0.515 tol=6.6
2024-07-08 21:12:29,190 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=55.2 pTM=0.384 ipTM=0.56 tol=5.41
2024-07-08 21:13:43,279 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.1 pTM=0.385 ipTM=0.52 tol=5.64
2024-07-08 21:14:57,379 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55.3 pTM=0.385 ipTM=0.533 tol=9.03
2024-07-08 21:16:11,490 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.2 pTM=0.386 ipTM=0.537 tol=7.12
2024-07-08 21:17:25,603 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55.4 pTM=0.387 ipTM=0.553 tol=3.52
2024-07-08 21:18:39,692 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.3 pTM=0.389 ipTM=0.547 tol=7.98
2024-07-08 21:19:53,793 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55.3 pTM=0.388 ipTM=0.563 tol=5.92
2024-07-08 21:21:07,860 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.3 pTM=0.39 ipTM=0.525 tol=8.86
2024-07-08 21:22:21,937 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.4 pTM=0.389 ipTM=0.537 tol=4.2
2024-07-08 21:23:36,038 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.3 pTM=0.39 ipTM=0.565 tol=4.23
2024-07-08 21:24:50,124 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.5 pTM=0.388 ipTM=0.549 tol=3.61
2024-07-08 21:26:04,193 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.4 pTM=0.389 ipTM=0.559 tol=4.1
2024-07-08 21:27:18,273 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.4 pTM=0.389 ipTM=0.526 tol=4.59
2024-07-08 21:28:32,328 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.4 pTM=0.39 ipTM=0.52 tol=5.43
2024-07-08 21:29:46,398 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.4 pTM=0.389 ipTM=0.543 tol=4.29
2024-07-08 21:31:00,487 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.3 pTM=0.39 ipTM=0.558 tol=5.04
2024-07-08 21:32:14,558 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.3 pTM=0.388 ipTM=0.558 tol=4.38
2024-07-08 21:33:28,596 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.4 pTM=0.39 ipTM=0.562 tol=3.64
2024-07-08 21:34:42,654 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.3 pTM=0.389 ipTM=0.534 tol=8.84
2024-07-08 21:35:56,715 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.3 pTM=0.391 ipTM=0.554 tol=8.14
2024-07-08 21:37:10,749 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.2 pTM=0.39 ipTM=0.531 tol=3.6
2024-07-08 21:38:24,811 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.5 pTM=0.391 ipTM=0.579 tol=3.84
2024-07-08 21:39:38,843 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.6 pTM=0.391 ipTM=0.541 tol=4.19
2024-07-08 21:40:52,888 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.5 pTM=0.39 ipTM=0.561 tol=4.28
2024-07-08 21:40:52,889 alphafold2_multimer_v3_model_5_seed_000 took 2296.5s (30 recycles)
2024-07-08 21:40:54,377 reranking models by 'multimer' metric
2024-07-08 21:41:02,102 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 21:46:52,221 Relaxation took 357.8s
2024-07-08 21:46:52,222 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=56 pTM=0.375 ipTM=0.651
2024-07-08 21:50:06,872 Relaxation took 194.6s
2024-07-08 21:50:06,872 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.5 pTM=0.39 ipTM=0.561
2024-07-08 21:54:50,397 Relaxation took 283.5s
2024-07-08 21:54:50,398 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=53.6 pTM=0.375 ipTM=0.547
2024-07-08 21:58:16,489 Relaxation took 206.1s
2024-07-08 21:58:16,489 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=54.6 pTM=0.383 ipTM=0.513
2024-07-08 22:01:09,522 Relaxation took 173.0s
2024-07-08 22:01:09,522 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=55.9 pTM=0.384 ipTM=0.453
2024-07-08 22:01:13,502 Done