2024-07-08 22:38:04,008 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-08 22:38:04,344 Running on GPU
2024-07-08 22:38:10,248 Found 6 citations for tools or databases
2024-07-08 22:38:10,248 Query 1/1: CAPZB_DCC1 (length 665)
2024-07-08 22:38:10,696 Sleeping for 5s. Reason: PENDING
2024-07-08 22:38:16,496 Sleeping for 10s. Reason: RUNNING
2024-07-08 22:38:26,910 Sleeping for 9s. Reason: RUNNING
2024-07-08 22:38:36,332 Sleeping for 10s. Reason: RUNNING
2024-07-08 22:38:49,169 Sleeping for 7s. Reason: PENDING
2024-07-08 22:38:56,573 Sleeping for 7s. Reason: RUNNING
2024-07-08 22:39:04,011 Sleeping for 10s. Reason: RUNNING
2024-07-08 22:39:20,338 Setting max_seq=508, max_extra_seq=2048
2024-07-08 22:42:17,536 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.8 pTM=0.554 ipTM=0.216
2024-07-08 22:42:26,287 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.8 pTM=0.57 ipTM=0.252 tol=9.85
2024-07-08 22:42:35,061 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.1 pTM=0.579 ipTM=0.272 tol=4.36
2024-07-08 22:42:43,843 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.6 pTM=0.567 ipTM=0.23 tol=1.57
2024-07-08 22:42:52,630 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.4 pTM=0.573 ipTM=0.248 tol=1.21
2024-07-08 22:43:01,428 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.1 pTM=0.567 ipTM=0.237 tol=1.75
2024-07-08 22:43:10,226 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=77.9 pTM=0.579 ipTM=0.284 tol=0.903
2024-07-08 22:43:19,041 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.6 pTM=0.566 ipTM=0.242 tol=0.699
2024-07-08 22:43:27,878 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=77.4 pTM=0.568 ipTM=0.257 tol=2.41
2024-07-08 22:43:36,720 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=77.8 pTM=0.568 ipTM=0.266 tol=1.35
2024-07-08 22:43:45,536 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=77.4 pTM=0.575 ipTM=0.298 tol=1.5
2024-07-08 22:43:54,367 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=77.8 pTM=0.561 ipTM=0.231 tol=2.32
2024-07-08 22:44:03,228 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=77.9 pTM=0.567 ipTM=0.24 tol=2.65
2024-07-08 22:44:12,068 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=78.2 pTM=0.566 ipTM=0.257 tol=2.4
2024-07-08 22:44:20,929 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=78 pTM=0.575 ipTM=0.282 tol=2.04
2024-07-08 22:44:29,805 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=78.1 pTM=0.562 ipTM=0.232 tol=1.18
2024-07-08 22:44:38,679 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=77.9 pTM=0.564 ipTM=0.229 tol=0.359
2024-07-08 22:44:38,680 alphafold2_multimer_v3_model_1_seed_000 took 311.1s (16 recycles)
2024-07-08 22:44:47,825 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.1 pTM=0.56 ipTM=0.244
2024-07-08 22:44:56,693 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.8 pTM=0.567 ipTM=0.27 tol=5.28
2024-07-08 22:45:05,576 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.9 pTM=0.556 ipTM=0.209 tol=1.81
2024-07-08 22:45:14,457 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.4 pTM=0.567 ipTM=0.232 tol=1.69
2024-07-08 22:45:23,358 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.3 pTM=0.552 ipTM=0.191 tol=4.51
2024-07-08 22:45:32,259 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.5 pTM=0.575 ipTM=0.253 tol=1.9
2024-07-08 22:45:41,151 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.8 pTM=0.551 ipTM=0.192 tol=1.97
2024-07-08 22:45:50,051 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.3 pTM=0.571 ipTM=0.237 tol=1.66
2024-07-08 22:45:58,949 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.6 pTM=0.552 ipTM=0.192 tol=1.18
2024-07-08 22:46:07,841 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=81.1 pTM=0.564 ipTM=0.224 tol=1.35
2024-07-08 22:46:16,735 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=81.1 pTM=0.552 ipTM=0.193 tol=1.47
2024-07-08 22:46:25,633 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.3 pTM=0.557 ipTM=0.208 tol=1.2
2024-07-08 22:46:34,541 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.3 pTM=0.56 ipTM=0.233 tol=1.71
2024-07-08 22:46:43,441 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81.1 pTM=0.553 ipTM=0.206 tol=3.84
2024-07-08 22:46:52,339 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=81 pTM=0.562 ipTM=0.227 tol=3.68
2024-07-08 22:47:01,244 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=81.6 pTM=0.553 ipTM=0.197 tol=1.78
2024-07-08 22:47:10,129 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=81.1 pTM=0.567 ipTM=0.247 tol=6.34
2024-07-08 22:47:19,044 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=81.7 pTM=0.551 ipTM=0.189 tol=5.06
2024-07-08 22:47:27,939 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=81 pTM=0.564 ipTM=0.24 tol=2.31
2024-07-08 22:47:36,851 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=81.8 pTM=0.551 ipTM=0.182 tol=2.58
2024-07-08 22:47:45,747 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=81.1 pTM=0.567 ipTM=0.24 tol=5.48
2024-07-08 22:47:54,661 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=82 pTM=0.549 ipTM=0.185 tol=5.64
2024-07-08 22:48:03,560 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=81 pTM=0.566 ipTM=0.239 tol=2.56
2024-07-08 22:48:12,465 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=81.8 pTM=0.546 ipTM=0.179 tol=2.75
2024-07-08 22:48:21,358 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=81.2 pTM=0.57 ipTM=0.256 tol=1.66
2024-07-08 22:48:30,263 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=81.8 pTM=0.554 ipTM=0.196 tol=3.06
2024-07-08 22:48:39,161 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=81.4 pTM=0.562 ipTM=0.216 tol=0.981
2024-07-08 22:48:48,064 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=81.4 pTM=0.553 ipTM=0.189 tol=0.805
2024-07-08 22:48:56,968 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=81.3 pTM=0.557 ipTM=0.206 tol=1.21
2024-07-08 22:49:05,869 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=81 pTM=0.556 ipTM=0.211 tol=1.52
2024-07-08 22:49:14,773 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=81.4 pTM=0.553 ipTM=0.194 tol=2.04
2024-07-08 22:49:14,774 alphafold2_multimer_v3_model_2_seed_000 took 275.8s (30 recycles)
2024-07-08 22:49:23,964 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.9 pTM=0.55 ipTM=0.19
2024-07-08 22:49:32,877 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.1 pTM=0.567 ipTM=0.205 tol=3.77
2024-07-08 22:49:41,772 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.6 pTM=0.566 ipTM=0.213 tol=2.26
2024-07-08 22:49:50,694 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.8 pTM=0.569 ipTM=0.211 tol=1
2024-07-08 22:49:59,602 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.9 pTM=0.572 ipTM=0.216 tol=0.865
2024-07-08 22:50:08,508 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.2 pTM=0.57 ipTM=0.215 tol=0.928
2024-07-08 22:50:17,418 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80 pTM=0.576 ipTM=0.243 tol=2.76
2024-07-08 22:50:26,319 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.8 pTM=0.583 ipTM=0.261 tol=4.62
2024-07-08 22:50:35,216 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.6 pTM=0.576 ipTM=0.246 tol=1.09
2024-07-08 22:50:44,116 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.8 pTM=0.576 ipTM=0.261 tol=0.791
2024-07-08 22:50:53,015 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.7 pTM=0.582 ipTM=0.267 tol=1.08
2024-07-08 22:51:01,925 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.1 pTM=0.579 ipTM=0.267 tol=0.465
2024-07-08 22:51:01,925 alphafold2_multimer_v3_model_3_seed_000 took 106.9s (11 recycles)
2024-07-08 22:51:11,146 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.5 pTM=0.582 ipTM=0.246
2024-07-08 22:51:20,089 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.9 pTM=0.593 ipTM=0.255 tol=8.09
2024-07-08 22:51:29,020 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.4 pTM=0.578 ipTM=0.222 tol=5.2
2024-07-08 22:51:37,934 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76.8 pTM=0.577 ipTM=0.217 tol=4.07
2024-07-08 22:51:46,865 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.4 pTM=0.572 ipTM=0.196 tol=8.03
2024-07-08 22:51:55,789 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.1 pTM=0.566 ipTM=0.186 tol=3.06
2024-07-08 22:52:04,708 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.1 pTM=0.572 ipTM=0.203 tol=5.21
2024-07-08 22:52:13,628 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.9 pTM=0.572 ipTM=0.203 tol=4.54
2024-07-08 22:52:22,552 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79 pTM=0.571 ipTM=0.203 tol=8.71
2024-07-08 22:52:31,479 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.9 pTM=0.568 ipTM=0.191 tol=4.86
2024-07-08 22:52:40,400 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.4 pTM=0.574 ipTM=0.206 tol=1.92
2024-07-08 22:52:49,328 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80 pTM=0.57 ipTM=0.194 tol=2.83
2024-07-08 22:52:58,257 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.2 pTM=0.571 ipTM=0.196 tol=3.76
2024-07-08 22:53:07,180 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.1 pTM=0.57 ipTM=0.199 tol=2.64
2024-07-08 22:53:16,099 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.4 pTM=0.599 ipTM=0.26 tol=6.73
2024-07-08 22:53:25,019 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80 pTM=0.588 ipTM=0.237 tol=8.12
2024-07-08 22:53:33,937 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.5 pTM=0.572 ipTM=0.201 tol=2.28
2024-07-08 22:53:42,848 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.3 pTM=0.601 ipTM=0.278 tol=11.2
2024-07-08 22:53:51,767 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.9 pTM=0.576 ipTM=0.213 tol=11.1
2024-07-08 22:54:00,698 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.6 pTM=0.571 ipTM=0.19 tol=3.73
2024-07-08 22:54:09,624 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79.9 pTM=0.573 ipTM=0.198 tol=3.77
2024-07-08 22:54:18,549 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80.5 pTM=0.569 ipTM=0.186 tol=3.84
2024-07-08 22:54:27,475 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.3 pTM=0.572 ipTM=0.197 tol=1.74
2024-07-08 22:54:36,382 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=79.6 pTM=0.589 ipTM=0.25 tol=5.41
2024-07-08 22:54:45,306 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=79.8 pTM=0.572 ipTM=0.196 tol=4.17
2024-07-08 22:54:54,234 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.6 pTM=0.569 ipTM=0.188 tol=3.01
2024-07-08 22:55:03,175 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79.9 pTM=0.574 ipTM=0.198 tol=1.8
2024-07-08 22:55:12,092 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.1 pTM=0.585 ipTM=0.235 tol=4.35
2024-07-08 22:55:21,010 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=79.8 pTM=0.566 ipTM=0.188 tol=4.14
2024-07-08 22:55:29,929 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.1 pTM=0.571 ipTM=0.195 tol=3.49
2024-07-08 22:55:38,855 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=79.3 pTM=0.58 ipTM=0.214 tol=6.23
2024-07-08 22:55:38,856 alphafold2_multimer_v3_model_4_seed_000 took 276.6s (30 recycles)
2024-07-08 22:55:48,036 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.3 pTM=0.581 ipTM=0.279
2024-07-08 22:55:56,971 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.8 pTM=0.562 ipTM=0.208 tol=7.79
2024-07-08 22:56:05,886 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.8 pTM=0.564 ipTM=0.226 tol=2.57
2024-07-08 22:56:14,814 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.8 pTM=0.558 ipTM=0.19 tol=1.95
2024-07-08 22:56:23,748 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.5 pTM=0.567 ipTM=0.215 tol=2.6
2024-07-08 22:56:32,672 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.5 pTM=0.56 ipTM=0.195 tol=1.41
2024-07-08 22:56:41,591 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80 pTM=0.566 ipTM=0.204 tol=0.793
2024-07-08 22:56:50,524 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.6 pTM=0.561 ipTM=0.195 tol=1.09
2024-07-08 22:56:59,435 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80 pTM=0.561 ipTM=0.201 tol=0.558
2024-07-08 22:57:08,367 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80 pTM=0.563 ipTM=0.207 tol=1.19
2024-07-08 22:57:17,300 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.2 pTM=0.562 ipTM=0.207 tol=1.04
2024-07-08 22:57:26,222 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.2 pTM=0.558 ipTM=0.195 tol=1.03
2024-07-08 22:57:35,142 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.2 pTM=0.553 ipTM=0.181 tol=0.508
2024-07-08 22:57:44,062 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.9 pTM=0.554 ipTM=0.188 tol=0.655
2024-07-08 22:57:52,985 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.3 pTM=0.558 ipTM=0.189 tol=0.518
2024-07-08 22:58:01,920 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.4 pTM=0.559 ipTM=0.193 tol=0.427
2024-07-08 22:58:01,921 alphafold2_multimer_v3_model_5_seed_000 took 142.8s (15 recycles)
2024-07-08 22:58:02,209 reranking models by 'multimer' metric
2024-07-08 22:58:05,428 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-08 22:58:54,495 Relaxation took 52.3s
2024-07-08 22:58:54,495 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.1 pTM=0.579 ipTM=0.267
2024-07-08 22:59:10,552 Relaxation took 16.1s
2024-07-08 22:59:10,553 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=77.9 pTM=0.564 ipTM=0.229
2024-07-08 22:59:29,946 Relaxation took 19.4s
2024-07-08 22:59:29,946 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.3 pTM=0.58 ipTM=0.214
2024-07-08 22:59:45,214 Relaxation took 15.3s
2024-07-08 22:59:45,214 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.4 pTM=0.559 ipTM=0.193
2024-07-08 23:00:11,351 Relaxation took 26.1s
2024-07-08 23:00:11,351 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.4 pTM=0.553 ipTM=0.194
2024-07-08 23:00:12,653 Done