2024-07-09 00:52:33,872 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 00:52:34,246 Running on GPU
2024-07-09 00:52:36,472 Found 6 citations for tools or databases
2024-07-09 00:52:36,473 Query 1/1: CCL21_DPM3 (length 226)
2024-07-09 00:52:36,915 Sleeping for 9s. Reason: PENDING
2024-07-09 00:52:46,348 Sleeping for 6s. Reason: RUNNING
2024-07-09 00:52:52,765 Sleeping for 9s. Reason: RUNNING
2024-07-09 00:53:02,176 Sleeping for 6s. Reason: RUNNING
2024-07-09 00:53:11,229 Sleeping for 5s. Reason: PENDING
2024-07-09 00:53:16,649 Sleeping for 5s. Reason: RUNNING
2024-07-09 00:53:24,288 Setting max_seq=508, max_extra_seq=2048
2024-07-09 00:55:52,498 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=62.5 pTM=0.337 ipTM=0.146
2024-07-09 00:55:54,668 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=62.1 pTM=0.34 ipTM=0.174 tol=2.46
2024-07-09 00:55:56,832 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=61.5 pTM=0.344 ipTM=0.188 tol=4.72
2024-07-09 00:55:58,992 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=61.5 pTM=0.349 ipTM=0.195 tol=2.33
2024-07-09 00:56:01,154 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.8 pTM=0.344 ipTM=0.195 tol=1.34
2024-07-09 00:56:03,313 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61.4 pTM=0.35 ipTM=0.198 tol=1.7
2024-07-09 00:56:05,475 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=61.7 pTM=0.353 ipTM=0.201 tol=1.62
2024-07-09 00:56:07,634 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61.1 pTM=0.35 ipTM=0.198 tol=1.21
2024-07-09 00:56:09,795 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=61.2 pTM=0.356 ipTM=0.205 tol=0.958
2024-07-09 00:56:11,954 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=61 pTM=0.354 ipTM=0.206 tol=1.39
2024-07-09 00:56:14,114 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=61.2 pTM=0.351 ipTM=0.203 tol=0.518
2024-07-09 00:56:16,273 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=61.3 pTM=0.354 ipTM=0.205 tol=0.682
2024-07-09 00:56:18,433 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=61.6 pTM=0.35 ipTM=0.2 tol=1.09
2024-07-09 00:56:20,594 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.8 pTM=0.354 ipTM=0.203 tol=0.976
2024-07-09 00:56:22,754 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61.5 pTM=0.359 ipTM=0.209 tol=1.79
2024-07-09 00:56:24,913 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=61.3 pTM=0.354 ipTM=0.204 tol=1.03
2024-07-09 00:56:27,072 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=61.7 pTM=0.355 ipTM=0.203 tol=0.733
2024-07-09 00:56:29,232 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=61.6 pTM=0.357 ipTM=0.206 tol=0.65
2024-07-09 00:56:31,392 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=61.8 pTM=0.355 ipTM=0.205 tol=1.12
2024-07-09 00:56:33,550 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=61.7 pTM=0.356 ipTM=0.205 tol=0.825
2024-07-09 00:56:35,710 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=61.8 pTM=0.356 ipTM=0.206 tol=1.09
2024-07-09 00:56:37,870 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61.3 pTM=0.355 ipTM=0.207 tol=0.868
2024-07-09 00:56:40,030 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=62.2 pTM=0.354 ipTM=0.203 tol=1.4
2024-07-09 00:56:42,189 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=61 pTM=0.354 ipTM=0.205 tol=1.74
2024-07-09 00:56:44,350 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=61.6 pTM=0.352 ipTM=0.201 tol=0.729
2024-07-09 00:56:46,509 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=60.8 pTM=0.353 ipTM=0.203 tol=1.61
2024-07-09 00:56:48,671 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=61.4 pTM=0.352 ipTM=0.2 tol=0.92
2024-07-09 00:56:50,833 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=62 pTM=0.354 ipTM=0.201 tol=0.637
2024-07-09 00:56:52,994 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=61.9 pTM=0.355 ipTM=0.202 tol=1.19
2024-07-09 00:56:55,154 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=62 pTM=0.354 ipTM=0.201 tol=0.718
2024-07-09 00:56:57,314 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=61.6 pTM=0.355 ipTM=0.203 tol=1.2
2024-07-09 00:56:57,315 alphafold2_multimer_v3_model_1_seed_000 took 208.0s (30 recycles)
2024-07-09 00:56:59,535 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=59.9 pTM=0.329 ipTM=0.173
2024-07-09 00:57:01,696 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.9 pTM=0.331 ipTM=0.181 tol=3.9
2024-07-09 00:57:03,857 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=61.1 pTM=0.336 ipTM=0.188 tol=1.61
2024-07-09 00:57:06,015 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=60.1 pTM=0.338 ipTM=0.2 tol=1.75
2024-07-09 00:57:08,175 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.1 pTM=0.334 ipTM=0.204 tol=1.24
2024-07-09 00:57:10,335 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.7 pTM=0.342 ipTM=0.207 tol=2.92
2024-07-09 00:57:12,496 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.8 pTM=0.344 ipTM=0.207 tol=2.77
2024-07-09 00:57:14,656 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.4 pTM=0.343 ipTM=0.208 tol=3.05
2024-07-09 00:57:16,816 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=59.8 pTM=0.343 ipTM=0.209 tol=2.13
2024-07-09 00:57:18,976 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.4 pTM=0.342 ipTM=0.218 tol=3.52
2024-07-09 00:57:21,137 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.1 pTM=0.341 ipTM=0.218 tol=6.11
2024-07-09 00:57:23,297 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=61 pTM=0.342 ipTM=0.218 tol=2.87
2024-07-09 00:57:25,457 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.9 pTM=0.34 ipTM=0.209 tol=1.36
2024-07-09 00:57:27,617 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=61.9 pTM=0.344 ipTM=0.212 tol=2.15
2024-07-09 00:57:29,777 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=61.2 pTM=0.344 ipTM=0.216 tol=2.99
2024-07-09 00:57:31,935 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=61.1 pTM=0.342 ipTM=0.215 tol=3.9
2024-07-09 00:57:34,094 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=61.2 pTM=0.342 ipTM=0.214 tol=1.91
2024-07-09 00:57:36,254 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=61.4 pTM=0.345 ipTM=0.219 tol=1.83
2024-07-09 00:57:38,414 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.9 pTM=0.342 ipTM=0.22 tol=2.52
2024-07-09 00:57:40,573 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=61.4 pTM=0.346 ipTM=0.22 tol=0.957
2024-07-09 00:57:42,733 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61.4 pTM=0.346 ipTM=0.219 tol=1.15
2024-07-09 00:57:44,892 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.8 pTM=0.34 ipTM=0.215 tol=0.948
2024-07-09 00:57:47,053 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=61.1 pTM=0.344 ipTM=0.221 tol=0.691
2024-07-09 00:57:49,211 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.7 pTM=0.344 ipTM=0.222 tol=1.53
2024-07-09 00:57:51,370 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=59.8 pTM=0.344 ipTM=0.22 tol=2.28
2024-07-09 00:57:53,530 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.6 pTM=0.348 ipTM=0.224 tol=2.48
2024-07-09 00:57:55,690 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61.1 pTM=0.345 ipTM=0.219 tol=0.604
2024-07-09 00:57:57,850 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=61.2 pTM=0.347 ipTM=0.215 tol=2.8
2024-07-09 00:58:00,010 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=61.5 pTM=0.346 ipTM=0.216 tol=2.03
2024-07-09 00:58:02,169 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=61.2 pTM=0.344 ipTM=0.212 tol=0.848
2024-07-09 00:58:04,330 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=61.6 pTM=0.344 ipTM=0.212 tol=1.13
2024-07-09 00:58:04,330 alphafold2_multimer_v3_model_2_seed_000 took 67.0s (30 recycles)
2024-07-09 00:58:06,584 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=57.8 pTM=0.344 ipTM=0.188
2024-07-09 00:58:08,749 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=58.4 pTM=0.347 ipTM=0.195 tol=9.12
2024-07-09 00:58:10,913 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=58.3 pTM=0.347 ipTM=0.195 tol=1.58
2024-07-09 00:58:13,076 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=58.2 pTM=0.348 ipTM=0.202 tol=1.49
2024-07-09 00:58:15,241 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=58.1 pTM=0.35 ipTM=0.207 tol=1.19
2024-07-09 00:58:17,405 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=58.1 pTM=0.351 ipTM=0.213 tol=1.85
2024-07-09 00:58:19,567 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=58.5 pTM=0.351 ipTM=0.216 tol=1.66
2024-07-09 00:58:21,729 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=58.9 pTM=0.35 ipTM=0.215 tol=0.648
2024-07-09 00:58:23,892 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=59.2 pTM=0.355 ipTM=0.223 tol=1.51
2024-07-09 00:58:26,054 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=58.4 pTM=0.352 ipTM=0.222 tol=0.692
2024-07-09 00:58:28,219 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=57.8 pTM=0.35 ipTM=0.216 tol=2.03
2024-07-09 00:58:30,388 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=58.6 pTM=0.354 ipTM=0.223 tol=1.46
2024-07-09 00:58:32,550 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=59.4 pTM=0.353 ipTM=0.219 tol=1.14
2024-07-09 00:58:34,712 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=59.4 pTM=0.361 ipTM=0.228 tol=1.28
2024-07-09 00:58:36,875 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=58.5 pTM=0.353 ipTM=0.222 tol=0.546
2024-07-09 00:58:39,036 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=58.3 pTM=0.353 ipTM=0.221 tol=0.601
2024-07-09 00:58:41,197 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=58.5 pTM=0.353 ipTM=0.223 tol=0.87
2024-07-09 00:58:43,358 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=59.6 pTM=0.361 ipTM=0.229 tol=1.18
2024-07-09 00:58:45,520 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=59.4 pTM=0.359 ipTM=0.228 tol=0.444
2024-07-09 00:58:45,520 alphafold2_multimer_v3_model_3_seed_000 took 41.1s (18 recycles)
2024-07-09 00:58:47,730 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.7 pTM=0.343 ipTM=0.174
2024-07-09 00:58:49,893 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.7 pTM=0.336 ipTM=0.2 tol=5.8
2024-07-09 00:58:52,056 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=56.5 pTM=0.332 ipTM=0.218 tol=3.09
2024-07-09 00:58:54,219 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=56.2 pTM=0.333 ipTM=0.221 tol=2.43
2024-07-09 00:58:56,382 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=56 pTM=0.332 ipTM=0.219 tol=2.21
2024-07-09 00:58:58,545 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.8 pTM=0.333 ipTM=0.22 tol=2.44
2024-07-09 00:59:00,711 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56 pTM=0.332 ipTM=0.223 tol=4.35
2024-07-09 00:59:02,873 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.8 pTM=0.33 ipTM=0.219 tol=5.03
2024-07-09 00:59:05,038 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.4 pTM=0.333 ipTM=0.229 tol=1.32
2024-07-09 00:59:07,201 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=55.9 pTM=0.333 ipTM=0.228 tol=1.94
2024-07-09 00:59:09,365 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=55.1 pTM=0.327 ipTM=0.224 tol=0.883
2024-07-09 00:59:11,527 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.7 pTM=0.329 ipTM=0.228 tol=0.817
2024-07-09 00:59:13,691 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=56.4 pTM=0.33 ipTM=0.223 tol=1.13
2024-07-09 00:59:15,854 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=56.7 pTM=0.333 ipTM=0.234 tol=1.17
2024-07-09 00:59:18,018 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=55.6 pTM=0.332 ipTM=0.225 tol=1.21
2024-07-09 00:59:20,182 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.5 pTM=0.328 ipTM=0.221 tol=0.384
2024-07-09 00:59:20,183 alphafold2_multimer_v3_model_4_seed_000 took 34.6s (15 recycles)
2024-07-09 00:59:22,391 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=58.5 pTM=0.34 ipTM=0.177
2024-07-09 00:59:24,554 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=57.7 pTM=0.349 ipTM=0.213 tol=5.7
2024-07-09 00:59:26,717 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=57.7 pTM=0.353 ipTM=0.213 tol=4.94
2024-07-09 00:59:28,880 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=57.4 pTM=0.355 ipTM=0.226 tol=3.76
2024-07-09 00:59:31,042 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=57.3 pTM=0.355 ipTM=0.225 tol=2.87
2024-07-09 00:59:33,204 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=57.5 pTM=0.359 ipTM=0.229 tol=1.84
2024-07-09 00:59:35,367 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=58.2 pTM=0.361 ipTM=0.234 tol=1.16
2024-07-09 00:59:37,529 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=57.7 pTM=0.359 ipTM=0.231 tol=1.69
2024-07-09 00:59:39,691 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=58.1 pTM=0.364 ipTM=0.236 tol=0.833
2024-07-09 00:59:41,852 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=57.2 pTM=0.359 ipTM=0.234 tol=1.03
2024-07-09 00:59:44,014 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=56.9 pTM=0.357 ipTM=0.234 tol=0.757
2024-07-09 00:59:46,176 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=57.8 pTM=0.357 ipTM=0.229 tol=1.25
2024-07-09 00:59:48,339 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=58 pTM=0.358 ipTM=0.229 tol=1.53
2024-07-09 00:59:50,502 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=58.3 pTM=0.363 ipTM=0.233 tol=0.819
2024-07-09 00:59:52,663 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57.7 pTM=0.363 ipTM=0.237 tol=0.782
2024-07-09 00:59:54,823 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=57.4 pTM=0.358 ipTM=0.232 tol=1.76
2024-07-09 00:59:56,984 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=57.7 pTM=0.358 ipTM=0.232 tol=1.08
2024-07-09 00:59:59,145 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=57.9 pTM=0.362 ipTM=0.232 tol=0.445
2024-07-09 00:59:59,145 alphafold2_multimer_v3_model_5_seed_000 took 38.9s (17 recycles)
2024-07-09 00:59:59,189 reranking models by 'multimer' metric
2024-07-09 01:00:01,972 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 01:00:10,091 Relaxation took 10.9s
2024-07-09 01:00:10,091 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=57.9 pTM=0.362 ipTM=0.232
2024-07-09 01:00:16,498 Relaxation took 6.4s
2024-07-09 01:00:16,499 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=59.4 pTM=0.359 ipTM=0.228
2024-07-09 01:00:23,725 Relaxation took 7.2s
2024-07-09 01:00:23,726 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55.5 pTM=0.328 ipTM=0.221
2024-07-09 01:00:27,456 Relaxation took 3.7s
2024-07-09 01:00:27,457 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=61.6 pTM=0.344 ipTM=0.212
2024-07-09 01:00:31,598 Relaxation took 4.1s
2024-07-09 01:00:31,598 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=61.6 pTM=0.355 ipTM=0.203
2024-07-09 01:00:32,427 Done