2024-07-09 01:36:52,279 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 01:36:52,615 Running on GPU
2024-07-09 01:36:56,570 Found 6 citations for tools or databases
2024-07-09 01:36:56,570 Query 1/1: CCR6_GALT1 (length 933)
2024-07-09 01:36:57,021 Sleeping for 7s. Reason: PENDING
2024-07-09 01:37:04,444 Sleeping for 6s. Reason: RUNNING
2024-07-09 01:37:10,850 Sleeping for 7s. Reason: RUNNING
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2024-07-09 01:37:50,837 Sleeping for 5s. Reason: RUNNING
2024-07-09 01:37:56,258 Sleeping for 6s. Reason: RUNNING
2024-07-09 01:38:02,660 Sleeping for 5s. Reason: RUNNING
2024-07-09 01:38:08,106 Sleeping for 8s. Reason: RUNNING
2024-07-09 01:38:16,541 Sleeping for 6s. Reason: RUNNING
2024-07-09 01:38:22,972 Sleeping for 8s. Reason: RUNNING
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2024-07-09 01:39:47,748 Sleeping for 8s. Reason: RUNNING
2024-07-09 01:40:26,014 Sleeping for 8s. Reason: PENDING
2024-07-09 01:40:34,444 Sleeping for 7s. Reason: RUNNING
2024-07-09 01:40:41,885 Sleeping for 5s. Reason: RUNNING
2024-07-09 01:40:47,316 Sleeping for 10s. Reason: RUNNING
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2024-07-09 01:41:35,444 Sleeping for 8s. Reason: RUNNING
2024-07-09 01:41:43,867 Sleeping for 9s. Reason: RUNNING
2024-07-09 01:41:54,128 Sleeping for 10s. Reason: RUNNING
2024-07-09 01:42:04,583 Sleeping for 5s. Reason: RUNNING
2024-07-09 01:42:10,009 Sleeping for 10s. Reason: RUNNING
2024-07-09 01:42:20,427 Sleeping for 9s. Reason: RUNNING
2024-07-09 01:42:29,850 Sleeping for 5s. Reason: RUNNING
2024-07-09 01:42:35,271 Sleeping for 7s. Reason: RUNNING
2024-07-09 01:42:43,223 Sleeping for 7s. Reason: RUNNING
2024-07-09 01:42:50,927 Sleeping for 9s. Reason: RUNNING
2024-07-09 01:43:08,127 Setting max_seq=508, max_extra_seq=2048
2024-07-09 01:46:14,342 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.6 pTM=0.584 ipTM=0.208
2024-07-09 01:46:34,015 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.8 pTM=0.577 ipTM=0.206 tol=6.01
2024-07-09 01:46:53,741 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.3 pTM=0.572 ipTM=0.187 tol=2.53
2024-07-09 01:47:13,514 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.6 pTM=0.571 ipTM=0.201 tol=2.62
2024-07-09 01:47:33,327 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.5 pTM=0.574 ipTM=0.213 tol=2.11
2024-07-09 01:47:53,160 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.5 pTM=0.573 ipTM=0.216 tol=1.07
2024-07-09 01:48:13,014 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=77.6 pTM=0.577 ipTM=0.238 tol=1.66
2024-07-09 01:48:32,872 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.5 pTM=0.574 ipTM=0.224 tol=0.854
2024-07-09 01:48:52,739 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=77.5 pTM=0.575 ipTM=0.228 tol=0.99
2024-07-09 01:49:12,610 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=78 pTM=0.601 ipTM=0.283 tol=3.21
2024-07-09 01:49:32,460 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=78.6 pTM=0.63 ipTM=0.352 tol=1.83
2024-07-09 01:49:52,312 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=78.4 pTM=0.616 ipTM=0.316 tol=1.57
2024-07-09 01:50:12,176 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=78.1 pTM=0.611 ipTM=0.314 tol=0.655
2024-07-09 01:50:32,033 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=78.6 pTM=0.628 ipTM=0.362 tol=0.737
2024-07-09 01:50:51,890 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=78.3 pTM=0.617 ipTM=0.324 tol=0.409
2024-07-09 01:50:51,891 alphafold2_multimer_v3_model_1_seed_000 took 458.7s (14 recycles)
2024-07-09 01:51:12,313 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.6 pTM=0.557 ipTM=0.202
2024-07-09 01:51:32,215 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.8 pTM=0.553 ipTM=0.191 tol=4.6
2024-07-09 01:51:52,102 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78 pTM=0.621 ipTM=0.392 tol=7.73
2024-07-09 01:52:11,990 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.1 pTM=0.71 ipTM=0.569 tol=5.61
2024-07-09 01:52:31,867 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.8 pTM=0.73 ipTM=0.568 tol=1.59
2024-07-09 01:52:51,757 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.3 pTM=0.75 ipTM=0.618 tol=0.636
2024-07-09 01:53:11,671 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.5 pTM=0.755 ipTM=0.622 tol=0.46
2024-07-09 01:53:11,672 alphafold2_multimer_v3_model_2_seed_000 took 139.2s (6 recycles)
2024-07-09 01:53:32,113 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.3 pTM=0.569 ipTM=0.205
2024-07-09 01:53:52,021 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.4 pTM=0.592 ipTM=0.245 tol=12.8
2024-07-09 01:54:11,914 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77.2 pTM=0.577 ipTM=0.192 tol=5.34
2024-07-09 01:54:31,831 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.8 pTM=0.568 ipTM=0.205 tol=3.6
2024-07-09 01:54:51,750 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.9 pTM=0.578 ipTM=0.194 tol=2.42
2024-07-09 01:55:11,682 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.8 pTM=0.57 ipTM=0.186 tol=5.36
2024-07-09 01:55:31,586 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.9 pTM=0.572 ipTM=0.181 tol=3.32
2024-07-09 01:55:51,492 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76.8 pTM=0.574 ipTM=0.187 tol=4.7
2024-07-09 01:56:11,391 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.6 pTM=0.571 ipTM=0.183 tol=3.37
2024-07-09 01:56:31,269 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=76.6 pTM=0.574 ipTM=0.185 tol=1.68
2024-07-09 01:56:51,159 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.8 pTM=0.571 ipTM=0.185 tol=1.5
2024-07-09 01:57:11,046 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=76.8 pTM=0.574 ipTM=0.188 tol=0.904
2024-07-09 01:57:30,951 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=76.6 pTM=0.572 ipTM=0.196 tol=2.23
2024-07-09 01:57:50,857 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=76.7 pTM=0.575 ipTM=0.193 tol=1.24
2024-07-09 01:58:10,771 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=76.8 pTM=0.584 ipTM=0.223 tol=3.75
2024-07-09 01:58:30,679 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=76.8 pTM=0.573 ipTM=0.204 tol=1.85
2024-07-09 01:58:50,586 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=76.6 pTM=0.585 ipTM=0.22 tol=1.96
2024-07-09 01:59:10,476 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=77.1 pTM=0.605 ipTM=0.29 tol=2.35
2024-07-09 01:59:30,367 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=76.6 pTM=0.586 ipTM=0.24 tol=1.12
2024-07-09 01:59:50,270 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=76.6 pTM=0.576 ipTM=0.225 tol=1.22
2024-07-09 02:00:10,159 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=76.6 pTM=0.584 ipTM=0.232 tol=1.37
2024-07-09 02:00:30,059 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=76.9 pTM=0.584 ipTM=0.238 tol=1.29
2024-07-09 02:00:49,952 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=76.8 pTM=0.599 ipTM=0.265 tol=1.73
2024-07-09 02:01:09,848 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=76.6 pTM=0.58 ipTM=0.227 tol=2.32
2024-07-09 02:01:29,766 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=76.4 pTM=0.568 ipTM=0.198 tol=3.01
2024-07-09 02:01:49,666 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=77 pTM=0.615 ipTM=0.339 tol=4.36
2024-07-09 02:02:09,548 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=77.1 pTM=0.611 ipTM=0.309 tol=1.6
2024-07-09 02:02:29,432 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=76.6 pTM=0.59 ipTM=0.243 tol=0.785
2024-07-09 02:02:49,314 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=76.4 pTM=0.582 ipTM=0.242 tol=0.762
2024-07-09 02:03:09,203 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=76.7 pTM=0.585 ipTM=0.245 tol=0.824
2024-07-09 02:03:29,096 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=76.7 pTM=0.592 ipTM=0.254 tol=0.98
2024-07-09 02:03:29,097 alphafold2_multimer_v3_model_3_seed_000 took 616.9s (30 recycles)
2024-07-09 02:03:49,564 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.7 pTM=0.551 ipTM=0.193
2024-07-09 02:04:09,495 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.1 pTM=0.568 ipTM=0.204 tol=4.52
2024-07-09 02:04:29,428 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.5 pTM=0.568 ipTM=0.191 tol=1.99
2024-07-09 02:04:49,397 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.8 pTM=0.566 ipTM=0.209 tol=7.1
2024-07-09 02:05:09,367 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.2 pTM=0.574 ipTM=0.215 tol=7
2024-07-09 02:05:29,331 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.4 pTM=0.569 ipTM=0.22 tol=5.19
2024-07-09 02:05:49,305 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.2 pTM=0.569 ipTM=0.212 tol=4.58
2024-07-09 02:06:09,293 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.3 pTM=0.568 ipTM=0.219 tol=4.7
2024-07-09 02:06:29,257 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.2 pTM=0.571 ipTM=0.205 tol=3.88
2024-07-09 02:06:49,215 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.3 pTM=0.57 ipTM=0.219 tol=3.35
2024-07-09 02:07:09,179 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.4 pTM=0.575 ipTM=0.23 tol=4.98
2024-07-09 02:07:29,171 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.6 pTM=0.572 ipTM=0.248 tol=3.59
2024-07-09 02:07:49,131 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.2 pTM=0.575 ipTM=0.25 tol=3.84
2024-07-09 02:08:09,091 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.3 pTM=0.572 ipTM=0.23 tol=3.49
2024-07-09 02:08:29,060 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.4 pTM=0.576 ipTM=0.242 tol=3.71
2024-07-09 02:08:49,034 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.4 pTM=0.572 ipTM=0.215 tol=4.86
2024-07-09 02:09:08,975 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.1 pTM=0.574 ipTM=0.218 tol=4.62
2024-07-09 02:09:28,937 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.5 pTM=0.573 ipTM=0.221 tol=2.39
2024-07-09 02:09:48,881 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=78.1 pTM=0.577 ipTM=0.241 tol=3.01
2024-07-09 02:10:08,840 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=78.6 pTM=0.576 ipTM=0.273 tol=2.81
2024-07-09 02:10:28,740 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79.8 pTM=0.662 ipTM=0.402 tol=5.32
2024-07-09 02:10:48,651 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80.8 pTM=0.709 ipTM=0.49 tol=0.85
2024-07-09 02:11:08,550 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.9 pTM=0.708 ipTM=0.487 tol=0.38
2024-07-09 02:11:08,551 alphafold2_multimer_v3_model_4_seed_000 took 458.9s (22 recycles)
2024-07-09 02:11:29,001 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.2 pTM=0.558 ipTM=0.176
2024-07-09 02:11:48,940 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.2 pTM=0.56 ipTM=0.189 tol=5.48
2024-07-09 02:12:08,882 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.6 pTM=0.565 ipTM=0.199 tol=4.71
2024-07-09 02:12:28,811 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.8 pTM=0.563 ipTM=0.189 tol=2.34
2024-07-09 02:12:48,743 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.1 pTM=0.565 ipTM=0.193 tol=3.44
2024-07-09 02:13:08,670 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76.9 pTM=0.563 ipTM=0.189 tol=2.51
2024-07-09 02:13:28,608 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.1 pTM=0.562 ipTM=0.188 tol=2.09
2024-07-09 02:13:48,534 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.9 pTM=0.562 ipTM=0.19 tol=0.943
2024-07-09 02:14:08,458 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.9 pTM=0.562 ipTM=0.192 tol=1.29
2024-07-09 02:14:28,381 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.8 pTM=0.564 ipTM=0.189 tol=2.37
2024-07-09 02:14:48,306 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=77.1 pTM=0.564 ipTM=0.194 tol=3.18
2024-07-09 02:15:08,228 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=77 pTM=0.563 ipTM=0.193 tol=1.33
2024-07-09 02:15:28,149 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.9 pTM=0.565 ipTM=0.201 tol=1.97
2024-07-09 02:15:48,065 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=76.8 pTM=0.571 ipTM=0.205 tol=2.75
2024-07-09 02:16:07,986 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77 pTM=0.584 ipTM=0.232 tol=2.86
2024-07-09 02:16:27,888 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=77.8 pTM=0.654 ipTM=0.422 tol=1.41
2024-07-09 02:16:47,792 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=78.5 pTM=0.678 ipTM=0.475 tol=1.24
2024-07-09 02:17:07,688 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.8 pTM=0.696 ipTM=0.475 tol=1.96
2024-07-09 02:17:27,579 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.5 pTM=0.683 ipTM=0.461 tol=1.33
2024-07-09 02:17:47,455 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=78.4 pTM=0.68 ipTM=0.458 tol=0.726
2024-07-09 02:18:07,341 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.7 pTM=0.68 ipTM=0.453 tol=0.807
2024-07-09 02:18:27,233 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=78.6 pTM=0.684 ipTM=0.468 tol=0.591
2024-07-09 02:18:47,125 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=78.8 pTM=0.697 ipTM=0.479 tol=0.41
2024-07-09 02:18:47,126 alphafold2_multimer_v3_model_5_seed_000 took 458.0s (22 recycles)
2024-07-09 02:18:47,664 reranking models by 'multimer' metric
2024-07-09 02:18:50,782 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 02:20:14,111 Relaxation took 86.4s
2024-07-09 02:20:14,112 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.5 pTM=0.755 ipTM=0.622
2024-07-09 02:20:37,811 Relaxation took 23.7s
2024-07-09 02:20:37,811 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.9 pTM=0.708 ipTM=0.487
2024-07-09 02:21:19,610 Relaxation took 41.8s
2024-07-09 02:21:19,610 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.8 pTM=0.697 ipTM=0.479
2024-07-09 02:21:44,571 Relaxation took 25.0s
2024-07-09 02:21:44,571 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.3 pTM=0.617 ipTM=0.324
2024-07-09 02:22:09,888 Relaxation took 25.3s
2024-07-09 02:22:09,888 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.7 pTM=0.592 ipTM=0.254
2024-07-09 02:22:11,606 Done