2024-07-09 04:26:49,037 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 04:26:50,418 Running on GPU
2024-07-09 04:26:55,132 Found 6 citations for tools or databases
2024-07-09 04:26:55,133 Query 1/1: CH25H_LSM8 (length 368)
2024-07-09 04:26:55,613 Sleeping for 5s. Reason: PENDING
2024-07-09 04:27:01,031 Sleeping for 10s. Reason: PENDING
2024-07-09 04:27:11,448 Sleeping for 7s. Reason: RUNNING
2024-07-09 04:27:18,862 Sleeping for 8s. Reason: RUNNING
2024-07-09 04:27:27,304 Sleeping for 8s. Reason: RUNNING
2024-07-09 04:27:35,718 Sleeping for 9s. Reason: RUNNING
2024-07-09 04:27:45,141 Sleeping for 9s. Reason: RUNNING
2024-07-09 04:27:54,568 Sleeping for 9s. Reason: RUNNING
2024-07-09 04:28:03,993 Sleeping for 6s. Reason: RUNNING
2024-07-09 04:28:10,426 Sleeping for 6s. Reason: RUNNING
2024-07-09 04:28:16,870 Sleeping for 10s. Reason: RUNNING
2024-07-09 04:28:30,111 Sleeping for 10s. Reason: PENDING
2024-07-09 04:28:40,545 Sleeping for 8s. Reason: RUNNING
2024-07-09 04:28:48,981 Sleeping for 5s. Reason: RUNNING
2024-07-09 04:28:54,425 Sleeping for 10s. Reason: RUNNING
2024-07-09 04:29:04,842 Sleeping for 7s. Reason: RUNNING
2024-07-09 04:29:14,438 Setting max_seq=508, max_extra_seq=2048
2024-07-09 04:32:12,219 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=81.5 pTM=0.705 ipTM=0.203
2024-07-09 04:32:17,171 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.4 pTM=0.714 ipTM=0.229 tol=3.04
2024-07-09 04:32:22,119 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.6 pTM=0.721 ipTM=0.261 tol=2
2024-07-09 04:32:27,065 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.6 pTM=0.712 ipTM=0.227 tol=0.518
2024-07-09 04:32:32,006 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.2 pTM=0.719 ipTM=0.256 tol=0.443
2024-07-09 04:32:32,007 alphafold2_multimer_v3_model_1_seed_000 took 176.5s (4 recycles)
2024-07-09 04:32:37,120 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.5 pTM=0.707 ipTM=0.212
2024-07-09 04:32:42,079 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.9 pTM=0.72 ipTM=0.228 tol=4.09
2024-07-09 04:32:47,038 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.9 pTM=0.723 ipTM=0.243 tol=3.26
2024-07-09 04:32:51,992 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.4 pTM=0.722 ipTM=0.24 tol=2.06
2024-07-09 04:32:56,938 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.5 pTM=0.719 ipTM=0.234 tol=0.893
2024-07-09 04:33:01,884 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.5 pTM=0.721 ipTM=0.236 tol=0.426
2024-07-09 04:33:01,884 alphafold2_multimer_v3_model_2_seed_000 took 29.7s (5 recycles)
2024-07-09 04:33:06,972 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80.8 pTM=0.719 ipTM=0.26
2024-07-09 04:33:11,913 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.1 pTM=0.715 ipTM=0.238 tol=2.38
2024-07-09 04:33:16,851 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.1 pTM=0.712 ipTM=0.236 tol=0.744
2024-07-09 04:33:21,794 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.3 pTM=0.721 ipTM=0.261 tol=0.67
2024-07-09 04:33:26,722 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.6 pTM=0.71 ipTM=0.233 tol=0.374
2024-07-09 04:33:26,723 alphafold2_multimer_v3_model_3_seed_000 took 24.7s (4 recycles)
2024-07-09 04:33:31,839 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.4 pTM=0.722 ipTM=0.251
2024-07-09 04:33:36,812 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81 pTM=0.723 ipTM=0.247 tol=3.84
2024-07-09 04:33:41,779 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.723 ipTM=0.25 tol=2.67
2024-07-09 04:33:46,756 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.1 pTM=0.726 ipTM=0.258 tol=3.21
2024-07-09 04:33:51,726 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.9 pTM=0.726 ipTM=0.257 tol=2.37
2024-07-09 04:33:56,698 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.6 pTM=0.725 ipTM=0.252 tol=1.21
2024-07-09 04:34:01,670 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.7 pTM=0.728 ipTM=0.265 tol=0.758
2024-07-09 04:34:06,645 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.1 pTM=0.724 ipTM=0.246 tol=1.58
2024-07-09 04:34:11,614 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.8 pTM=0.724 ipTM=0.25 tol=2.31
2024-07-09 04:34:16,588 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.1 pTM=0.725 ipTM=0.247 tol=1.31
2024-07-09 04:34:21,557 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.9 pTM=0.727 ipTM=0.26 tol=1.36
2024-07-09 04:34:26,527 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.8 pTM=0.723 ipTM=0.245 tol=1.39
2024-07-09 04:34:31,495 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=77.8 pTM=0.725 ipTM=0.255 tol=0.629
2024-07-09 04:34:36,466 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.2 pTM=0.724 ipTM=0.247 tol=0.95
2024-07-09 04:34:41,437 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.1 pTM=0.726 ipTM=0.254 tol=0.737
2024-07-09 04:34:46,413 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.1 pTM=0.724 ipTM=0.247 tol=0.792
2024-07-09 04:34:51,383 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.1 pTM=0.725 ipTM=0.254 tol=0.934
2024-07-09 04:34:56,359 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.3 pTM=0.725 ipTM=0.25 tol=0.595
2024-07-09 04:35:01,328 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=78 pTM=0.726 ipTM=0.258 tol=0.497
2024-07-09 04:35:01,329 alphafold2_multimer_v3_model_4_seed_000 took 94.5s (18 recycles)
2024-07-09 04:35:06,431 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79.8 pTM=0.725 ipTM=0.272
2024-07-09 04:35:11,392 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.1 pTM=0.718 ipTM=0.244 tol=3.62
2024-07-09 04:35:16,349 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.4 pTM=0.715 ipTM=0.236 tol=1.54
2024-07-09 04:35:21,308 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77 pTM=0.725 ipTM=0.266 tol=0.656
2024-07-09 04:35:26,259 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.2 pTM=0.716 ipTM=0.241 tol=0.43
2024-07-09 04:35:26,260 alphafold2_multimer_v3_model_5_seed_000 took 24.8s (4 recycles)
2024-07-09 04:35:26,404 reranking models by 'multimer' metric
2024-07-09 04:35:29,780 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 04:35:56,671 Relaxation took 30.3s
2024-07-09 04:35:56,672 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78 pTM=0.726 ipTM=0.258
2024-07-09 04:36:10,595 Relaxation took 13.9s
2024-07-09 04:36:10,595 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.2 pTM=0.719 ipTM=0.256
2024-07-09 04:36:29,640 Relaxation took 19.0s
2024-07-09 04:36:29,640 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.2 pTM=0.716 ipTM=0.241
2024-07-09 04:36:42,354 Relaxation took 12.7s
2024-07-09 04:36:42,355 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.5 pTM=0.721 ipTM=0.236
2024-07-09 04:38:57,170 Relaxation took 134.8s
2024-07-09 04:38:57,170 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.6 pTM=0.71 ipTM=0.233
2024-07-09 04:38:58,330 Done