2024-07-09 06:43:37,216 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 06:43:37,528 Running on GPU
2024-07-09 06:43:41,456 Found 6 citations for tools or databases
2024-07-09 06:43:41,456 Query 1/1: CNN2_PCMD2 (length 670)
2024-07-09 06:43:41,891 Sleeping for 6s. Reason: PENDING
2024-07-09 06:43:48,302 Sleeping for 10s. Reason: RUNNING
2024-07-09 06:43:58,725 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:44:04,133 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:44:09,542 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:44:14,969 Sleeping for 6s. Reason: RUNNING
2024-07-09 06:44:21,389 Sleeping for 9s. Reason: RUNNING
2024-07-09 06:44:31,172 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:44:36,585 Sleeping for 9s. Reason: RUNNING
2024-07-09 06:44:46,030 Sleeping for 9s. Reason: RUNNING
2024-07-09 06:44:55,451 Sleeping for 7s. Reason: RUNNING
2024-07-09 06:45:02,881 Sleeping for 6s. Reason: RUNNING
2024-07-09 06:45:09,296 Sleeping for 6s. Reason: RUNNING
2024-07-09 06:45:16,215 Sleeping for 8s. Reason: RUNNING
2024-07-09 06:45:35,148 Sleeping for 6s. Reason: PENDING
2024-07-09 06:45:41,575 Sleeping for 7s. Reason: RUNNING
2024-07-09 06:45:49,021 Sleeping for 7s. Reason: RUNNING
2024-07-09 06:45:56,438 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:46:02,032 Sleeping for 6s. Reason: RUNNING
2024-07-09 06:46:08,465 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:46:13,883 Sleeping for 5s. Reason: RUNNING
2024-07-09 06:46:19,318 Sleeping for 6s. Reason: RUNNING
2024-07-09 06:46:25,748 Sleeping for 6s. Reason: RUNNING
2024-07-09 06:46:32,174 Sleeping for 9s. Reason: RUNNING
2024-07-09 06:46:46,356 Setting max_seq=508, max_extra_seq=2048
2024-07-09 06:49:20,835 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=59.3 pTM=0.512 ipTM=0.296
2024-07-09 06:49:29,919 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=60.8 pTM=0.518 ipTM=0.192 tol=6.95
2024-07-09 06:49:39,020 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=61 pTM=0.5 ipTM=0.156 tol=6.41
2024-07-09 06:49:48,132 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=61.3 pTM=0.5 ipTM=0.178 tol=5.83
2024-07-09 06:49:57,272 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=61.7 pTM=0.488 ipTM=0.153 tol=8.29
2024-07-09 06:50:06,410 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61.2 pTM=0.482 ipTM=0.147 tol=5.8
2024-07-09 06:50:15,547 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=61.1 pTM=0.482 ipTM=0.154 tol=4.21
2024-07-09 06:50:24,698 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61.2 pTM=0.479 ipTM=0.146 tol=3.26
2024-07-09 06:50:33,847 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=61.3 pTM=0.482 ipTM=0.156 tol=3.23
2024-07-09 06:50:43,024 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=61.7 pTM=0.48 ipTM=0.15 tol=5.39
2024-07-09 06:50:52,179 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=61.8 pTM=0.498 ipTM=0.23 tol=4.04
2024-07-09 06:51:01,359 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.8 pTM=0.486 ipTM=0.165 tol=4.13
2024-07-09 06:51:10,515 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=61.9 pTM=0.504 ipTM=0.263 tol=4.56
2024-07-09 06:51:19,687 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=62.5 pTM=0.487 ipTM=0.171 tol=2.28
2024-07-09 06:51:28,843 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=62.2 pTM=0.51 ipTM=0.302 tol=4.05
2024-07-09 06:51:38,023 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.9 pTM=0.493 ipTM=0.191 tol=3.3
2024-07-09 06:51:47,167 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=62.8 pTM=0.52 ipTM=0.352 tol=2.48
2024-07-09 06:51:56,346 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=63 pTM=0.496 ipTM=0.2 tol=2.69
2024-07-09 06:52:05,497 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=62.6 pTM=0.516 ipTM=0.335 tol=3.14
2024-07-09 06:52:14,670 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=63 pTM=0.5 ipTM=0.219 tol=3.09
2024-07-09 06:52:23,831 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=62.9 pTM=0.519 ipTM=0.348 tol=2.46
2024-07-09 06:52:33,023 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=63.2 pTM=0.495 ipTM=0.2 tol=2.12
2024-07-09 06:52:42,183 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=63 pTM=0.526 ipTM=0.383 tol=3.5
2024-07-09 06:52:51,369 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=63.2 pTM=0.494 ipTM=0.193 tol=2.51
2024-07-09 06:53:00,536 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=62.7 pTM=0.515 ipTM=0.328 tol=3.68
2024-07-09 06:53:09,726 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=63.1 pTM=0.493 ipTM=0.194 tol=3.83
2024-07-09 06:53:18,891 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=62.6 pTM=0.515 ipTM=0.326 tol=2.67
2024-07-09 06:53:28,075 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=63.1 pTM=0.496 ipTM=0.198 tol=2.35
2024-07-09 06:53:37,237 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62.6 pTM=0.513 ipTM=0.321 tol=2.98
2024-07-09 06:53:46,412 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=63.1 pTM=0.494 ipTM=0.194 tol=4.04
2024-07-09 06:53:55,574 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=62.8 pTM=0.52 ipTM=0.351 tol=4.41
2024-07-09 06:53:55,575 alphafold2_multimer_v3_model_1_seed_000 took 424.2s (30 recycles)
2024-07-09 06:54:05,014 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=60.6 pTM=0.526 ipTM=0.207
2024-07-09 06:54:14,206 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=61.9 pTM=0.509 ipTM=0.169 tol=9.69
2024-07-09 06:54:23,419 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=62.1 pTM=0.497 ipTM=0.145 tol=6.21
2024-07-09 06:54:32,626 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=62.3 pTM=0.485 ipTM=0.127 tol=4.11
2024-07-09 06:54:41,837 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=62.5 pTM=0.484 ipTM=0.133 tol=4.93
2024-07-09 06:54:51,046 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62.6 pTM=0.484 ipTM=0.144 tol=8.07
2024-07-09 06:55:00,300 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=62.7 pTM=0.477 ipTM=0.119 tol=13.1
2024-07-09 06:55:09,525 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=63.1 pTM=0.48 ipTM=0.13 tol=11.4
2024-07-09 06:55:18,763 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=62.7 pTM=0.483 ipTM=0.134 tol=7.85
2024-07-09 06:55:27,980 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=62.9 pTM=0.483 ipTM=0.136 tol=7.55
2024-07-09 06:55:37,207 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=62.6 pTM=0.481 ipTM=0.13 tol=7.46
2024-07-09 06:55:46,429 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.1 pTM=0.483 ipTM=0.135 tol=4.42
2024-07-09 06:55:55,651 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=62.8 pTM=0.484 ipTM=0.135 tol=4.14
2024-07-09 06:56:04,861 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=62.9 pTM=0.481 ipTM=0.131 tol=3.93
2024-07-09 06:56:14,093 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=62.8 pTM=0.482 ipTM=0.132 tol=3.95
2024-07-09 06:56:23,313 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=62.9 pTM=0.481 ipTM=0.135 tol=3.79
2024-07-09 06:56:32,528 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=62.9 pTM=0.483 ipTM=0.131 tol=4.17
2024-07-09 06:56:41,740 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63 pTM=0.482 ipTM=0.132 tol=3.3
2024-07-09 06:56:50,957 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=62.9 pTM=0.483 ipTM=0.132 tol=3.39
2024-07-09 06:57:00,181 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.2 pTM=0.486 ipTM=0.139 tol=4.15
2024-07-09 06:57:09,398 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=62.7 pTM=0.481 ipTM=0.128 tol=8.8
2024-07-09 06:57:18,620 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=62.7 pTM=0.482 ipTM=0.129 tol=7.51
2024-07-09 06:57:27,848 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=62.6 pTM=0.48 ipTM=0.124 tol=2.97
2024-07-09 06:57:37,056 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=62.6 pTM=0.485 ipTM=0.14 tol=3.89
2024-07-09 06:57:46,272 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=62.4 pTM=0.479 ipTM=0.13 tol=4.26
2024-07-09 06:57:55,488 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=62.6 pTM=0.481 ipTM=0.13 tol=3.36
2024-07-09 06:58:04,705 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=62.9 pTM=0.484 ipTM=0.135 tol=2.62
2024-07-09 06:58:13,911 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=62.9 pTM=0.483 ipTM=0.132 tol=4.26
2024-07-09 06:58:23,128 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63.2 pTM=0.483 ipTM=0.133 tol=3.8
2024-07-09 06:58:32,337 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=62.5 pTM=0.479 ipTM=0.124 tol=4.27
2024-07-09 06:58:41,553 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63 pTM=0.48 ipTM=0.129 tol=4.27
2024-07-09 06:58:41,553 alphafold2_multimer_v3_model_2_seed_000 took 285.7s (30 recycles)
2024-07-09 06:58:51,040 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=60.5 pTM=0.502 ipTM=0.401
2024-07-09 06:59:00,278 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=61.2 pTM=0.511 ipTM=0.21 tol=12.5
2024-07-09 06:59:09,574 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=60.8 pTM=0.5 ipTM=0.145 tol=15.9
2024-07-09 06:59:18,891 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=61.2 pTM=0.489 ipTM=0.123 tol=11
2024-07-09 06:59:28,204 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=61.5 pTM=0.486 ipTM=0.118 tol=6.05
2024-07-09 06:59:37,484 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=61.4 pTM=0.483 ipTM=0.115 tol=6.92
2024-07-09 06:59:46,793 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=61.4 pTM=0.482 ipTM=0.118 tol=12.1
2024-07-09 06:59:56,113 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=61.9 pTM=0.492 ipTM=0.145 tol=7.93
2024-07-09 07:00:05,427 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=62.3 pTM=0.491 ipTM=0.136 tol=3.74
2024-07-09 07:00:14,737 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=62.2 pTM=0.498 ipTM=0.157 tol=3.15
2024-07-09 07:00:24,053 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=62.4 pTM=0.491 ipTM=0.135 tol=2.89
2024-07-09 07:00:33,352 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=62.2 pTM=0.5 ipTM=0.159 tol=2.47
2024-07-09 07:00:42,667 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=62.5 pTM=0.494 ipTM=0.143 tol=3.03
2024-07-09 07:00:51,969 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=62.2 pTM=0.498 ipTM=0.153 tol=4.5
2024-07-09 07:01:01,267 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=62.4 pTM=0.496 ipTM=0.149 tol=3.33
2024-07-09 07:01:10,566 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62.4 pTM=0.494 ipTM=0.145 tol=2.15
2024-07-09 07:01:19,862 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=62.5 pTM=0.494 ipTM=0.147 tol=1.53
2024-07-09 07:01:29,146 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=62.3 pTM=0.49 ipTM=0.132 tol=2.09
2024-07-09 07:01:38,440 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=62.5 pTM=0.495 ipTM=0.141 tol=3.27
2024-07-09 07:01:47,748 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62.5 pTM=0.492 ipTM=0.142 tol=3.25
2024-07-09 07:01:57,062 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=62.6 pTM=0.495 ipTM=0.146 tol=1.99
2024-07-09 07:02:06,366 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=62.6 pTM=0.49 ipTM=0.136 tol=2.41
2024-07-09 07:02:15,649 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=62.3 pTM=0.496 ipTM=0.152 tol=2.38
2024-07-09 07:02:24,957 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=62.3 pTM=0.486 ipTM=0.123 tol=2.74
2024-07-09 07:02:34,245 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=62.2 pTM=0.498 ipTM=0.153 tol=4.43
2024-07-09 07:02:43,560 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=62.7 pTM=0.488 ipTM=0.129 tol=3.96
2024-07-09 07:02:52,861 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=62.6 pTM=0.503 ipTM=0.161 tol=3.4
2024-07-09 07:03:02,176 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=63 pTM=0.492 ipTM=0.135 tol=3.76
2024-07-09 07:03:11,474 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=62.6 pTM=0.503 ipTM=0.163 tol=3.8
2024-07-09 07:03:20,774 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=62.6 pTM=0.494 ipTM=0.141 tol=3.08
2024-07-09 07:03:30,065 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=62.6 pTM=0.507 ipTM=0.172 tol=3.13
2024-07-09 07:03:30,066 alphafold2_multimer_v3_model_3_seed_000 took 288.2s (30 recycles)
2024-07-09 07:03:39,529 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=59.7 pTM=0.543 ipTM=0.27
2024-07-09 07:03:48,744 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=59.8 pTM=0.502 ipTM=0.158 tol=9.6
2024-07-09 07:03:58,029 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.3 pTM=0.492 ipTM=0.135 tol=14.2
2024-07-09 07:04:07,318 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=61 pTM=0.486 ipTM=0.146 tol=18.1
2024-07-09 07:04:16,566 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=61.9 pTM=0.495 ipTM=0.163 tol=7.14
2024-07-09 07:04:25,800 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=61.1 pTM=0.504 ipTM=0.168 tol=5.03
2024-07-09 07:04:35,056 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=61.3 pTM=0.492 ipTM=0.154 tol=3.04
2024-07-09 07:04:44,315 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=60.9 pTM=0.5 ipTM=0.149 tol=2.92
2024-07-09 07:04:53,573 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=61.2 pTM=0.496 ipTM=0.169 tol=2.46
2024-07-09 07:05:02,811 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=60.7 pTM=0.5 ipTM=0.165 tol=2.65
2024-07-09 07:05:12,066 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=61.3 pTM=0.493 ipTM=0.146 tol=2.06
2024-07-09 07:05:21,303 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=61.1 pTM=0.503 ipTM=0.161 tol=4.49
2024-07-09 07:05:30,554 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=61.6 pTM=0.491 ipTM=0.145 tol=3.46
2024-07-09 07:05:39,793 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=60.9 pTM=0.502 ipTM=0.164 tol=4.07
2024-07-09 07:05:49,047 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=61.4 pTM=0.491 ipTM=0.139 tol=3.02
2024-07-09 07:05:58,285 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=60.7 pTM=0.496 ipTM=0.149 tol=2.34
2024-07-09 07:06:07,544 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=61.4 pTM=0.488 ipTM=0.136 tol=3.02
2024-07-09 07:06:16,769 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=60.7 pTM=0.498 ipTM=0.152 tol=2.96
2024-07-09 07:06:26,025 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=61.6 pTM=0.49 ipTM=0.132 tol=2.31
2024-07-09 07:06:35,271 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=61.1 pTM=0.503 ipTM=0.159 tol=2.54
2024-07-09 07:06:44,529 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=61.6 pTM=0.494 ipTM=0.139 tol=3.25
2024-07-09 07:06:53,782 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=61.3 pTM=0.502 ipTM=0.159 tol=3.49
2024-07-09 07:07:03,032 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=61.3 pTM=0.491 ipTM=0.151 tol=2.95
2024-07-09 07:07:12,286 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=61.1 pTM=0.495 ipTM=0.141 tol=2.32
2024-07-09 07:07:21,542 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=61.2 pTM=0.49 ipTM=0.143 tol=2.53
2024-07-09 07:07:30,805 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=60.9 pTM=0.497 ipTM=0.144 tol=3.69
2024-07-09 07:07:40,048 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=61.2 pTM=0.49 ipTM=0.141 tol=2.34
2024-07-09 07:07:49,305 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=61.5 pTM=0.504 ipTM=0.155 tol=2.84
2024-07-09 07:07:58,545 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=61.6 pTM=0.489 ipTM=0.141 tol=3.29
2024-07-09 07:08:07,798 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=61.2 pTM=0.502 ipTM=0.156 tol=2.7
2024-07-09 07:08:17,065 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=61.8 pTM=0.486 ipTM=0.128 tol=5.01
2024-07-09 07:08:17,066 alphafold2_multimer_v3_model_4_seed_000 took 286.7s (30 recycles)
2024-07-09 07:08:26,538 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=60.3 pTM=0.504 ipTM=0.353
2024-07-09 07:08:35,763 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=61.3 pTM=0.495 ipTM=0.154 tol=7.15
2024-07-09 07:08:45,028 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.6 pTM=0.482 ipTM=0.115 tol=12.5
2024-07-09 07:08:54,326 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=61.5 pTM=0.477 ipTM=0.121 tol=12.8
2024-07-09 07:09:03,619 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=61.9 pTM=0.48 ipTM=0.12 tol=11.1
2024-07-09 07:09:12,880 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.1 pTM=0.484 ipTM=0.133 tol=6.64
2024-07-09 07:09:22,148 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=62.2 pTM=0.48 ipTM=0.118 tol=3.3
2024-07-09 07:09:31,412 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=62.2 pTM=0.483 ipTM=0.13 tol=3.52
2024-07-09 07:09:40,676 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=62.4 pTM=0.482 ipTM=0.123 tol=4.16
2024-07-09 07:09:49,925 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.3 pTM=0.485 ipTM=0.134 tol=3.98
2024-07-09 07:09:59,185 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=62.3 pTM=0.48 ipTM=0.121 tol=3.2
2024-07-09 07:10:08,447 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.4 pTM=0.485 ipTM=0.136 tol=6.06
2024-07-09 07:10:17,714 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62.3 pTM=0.481 ipTM=0.129 tol=5.17
2024-07-09 07:10:26,972 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.1 pTM=0.481 ipTM=0.132 tol=5.6
2024-07-09 07:10:36,231 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.2 pTM=0.479 ipTM=0.128 tol=3.62
2024-07-09 07:10:45,496 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62 pTM=0.484 ipTM=0.142 tol=2.9
2024-07-09 07:10:54,761 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.3 pTM=0.479 ipTM=0.122 tol=4.17
2024-07-09 07:11:04,009 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62 pTM=0.484 ipTM=0.137 tol=4.53
2024-07-09 07:11:13,266 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.3 pTM=0.48 ipTM=0.124 tol=3.01
2024-07-09 07:11:22,525 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.2 pTM=0.484 ipTM=0.138 tol=2.96
2024-07-09 07:11:31,801 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.6 pTM=0.48 ipTM=0.122 tol=3.73
2024-07-09 07:11:41,051 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62.4 pTM=0.483 ipTM=0.134 tol=2.21
2024-07-09 07:11:50,307 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62 pTM=0.479 ipTM=0.132 tol=3.64
2024-07-09 07:11:59,576 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62.2 pTM=0.479 ipTM=0.119 tol=2.68
2024-07-09 07:12:08,826 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=62.1 pTM=0.481 ipTM=0.127 tol=4.64
2024-07-09 07:12:18,087 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.6 pTM=0.484 ipTM=0.138 tol=4.89
2024-07-09 07:12:27,346 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.5 pTM=0.479 ipTM=0.122 tol=3.65
2024-07-09 07:12:36,600 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.5 pTM=0.483 ipTM=0.131 tol=3.25
2024-07-09 07:12:45,862 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.3 pTM=0.48 ipTM=0.125 tol=4.12
2024-07-09 07:12:55,116 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.5 pTM=0.482 ipTM=0.127 tol=3.7
2024-07-09 07:13:04,370 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.3 pTM=0.479 ipTM=0.124 tol=4.23
2024-07-09 07:13:04,371 alphafold2_multimer_v3_model_5_seed_000 took 287.0s (30 recycles)
2024-07-09 07:13:04,661 reranking models by 'multimer' metric
2024-07-09 07:13:07,726 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 07:13:35,919 Relaxation took 31.3s
2024-07-09 07:13:35,919 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=62.8 pTM=0.52 ipTM=0.351
2024-07-09 07:14:15,752 Relaxation took 39.8s
2024-07-09 07:14:15,752 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=62.6 pTM=0.507 ipTM=0.172
2024-07-09 07:14:49,532 Relaxation took 33.8s
2024-07-09 07:14:49,532 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=61.8 pTM=0.486 ipTM=0.128
2024-07-09 07:15:23,573 Relaxation took 34.0s
2024-07-09 07:15:23,573 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63 pTM=0.48 ipTM=0.129
2024-07-09 07:15:57,508 Relaxation took 33.9s
2024-07-09 07:15:57,508 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.3 pTM=0.479 ipTM=0.124
2024-07-09 07:15:58,765 Done