2024-07-09 08:11:34,000 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 08:11:34,341 Running on GPU
2024-07-09 08:11:38,036 Found 6 citations for tools or databases
2024-07-09 08:11:38,036 Query 1/1: CO005_JKAMP (length 405)
2024-07-09 08:11:38,483 Sleeping for 8s. Reason: PENDING
2024-07-09 08:11:47,707 Sleeping for 6s. Reason: RUNNING
2024-07-09 08:11:54,163 Sleeping for 9s. Reason: RUNNING
2024-07-09 08:12:03,584 Sleeping for 9s. Reason: RUNNING
2024-07-09 08:12:13,030 Sleeping for 6s. Reason: RUNNING
2024-07-09 08:12:19,607 Sleeping for 8s. Reason: RUNNING
2024-07-09 08:12:28,031 Sleeping for 8s. Reason: RUNNING
2024-07-09 08:12:36,454 Sleeping for 7s. Reason: RUNNING
2024-07-09 08:12:45,226 Sleeping for 10s. Reason: PENDING
2024-07-09 08:12:55,656 Sleeping for 7s. Reason: RUNNING
2024-07-09 08:13:03,065 Sleeping for 9s. Reason: RUNNING
2024-07-09 08:13:13,398 Setting max_seq=508, max_extra_seq=550
2024-07-09 08:16:08,395 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.9 pTM=0.7 ipTM=0.267
2024-07-09 08:16:12,124 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=66.4 pTM=0.671 ipTM=0.24 tol=1.46
2024-07-09 08:16:15,846 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=66.2 pTM=0.663 ipTM=0.218 tol=0.923
2024-07-09 08:16:19,567 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=67.1 pTM=0.674 ipTM=0.231 tol=0.437
2024-07-09 08:16:19,567 alphafold2_multimer_v3_model_1_seed_000 took 181.0s (3 recycles)
2024-07-09 08:16:23,419 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.8 pTM=0.676 ipTM=0.232
2024-07-09 08:16:27,135 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=65.2 pTM=0.652 ipTM=0.196 tol=3.02
2024-07-09 08:16:30,846 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=64.9 pTM=0.647 ipTM=0.192 tol=0.846
2024-07-09 08:16:34,559 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=65.2 pTM=0.649 ipTM=0.189 tol=0.722
2024-07-09 08:16:38,275 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=65.3 pTM=0.651 ipTM=0.187 tol=0.557
2024-07-09 08:16:41,993 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=65.9 pTM=0.655 ipTM=0.189 tol=0.567
2024-07-09 08:16:45,713 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=65.9 pTM=0.66 ipTM=0.193 tol=0.537
2024-07-09 08:16:49,430 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=65.8 pTM=0.654 ipTM=0.189 tol=0.49
2024-07-09 08:16:49,431 alphafold2_multimer_v3_model_2_seed_000 took 29.7s (7 recycles)
2024-07-09 08:16:53,289 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=70.4 pTM=0.703 ipTM=0.244
2024-07-09 08:16:57,010 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=68.4 pTM=0.672 ipTM=0.236 tol=1.4
2024-07-09 08:17:00,730 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=68.1 pTM=0.671 ipTM=0.235 tol=1.03
2024-07-09 08:17:04,446 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=68.2 pTM=0.673 ipTM=0.252 tol=0.557
2024-07-09 08:17:08,168 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.9 pTM=0.679 ipTM=0.249 tol=0.288
2024-07-09 08:17:08,168 alphafold2_multimer_v3_model_3_seed_000 took 18.6s (4 recycles)
2024-07-09 08:17:12,028 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=69.4 pTM=0.706 ipTM=0.28
2024-07-09 08:17:15,750 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=67.1 pTM=0.661 ipTM=0.239 tol=1.6
2024-07-09 08:17:19,473 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=66.6 pTM=0.662 ipTM=0.246 tol=1.26
2024-07-09 08:17:23,193 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66.6 pTM=0.657 ipTM=0.229 tol=0.876
2024-07-09 08:17:26,915 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=66.6 pTM=0.658 ipTM=0.23 tol=0.388
2024-07-09 08:17:26,916 alphafold2_multimer_v3_model_4_seed_000 took 18.6s (4 recycles)
2024-07-09 08:17:30,782 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=66.8 pTM=0.688 ipTM=0.189
2024-07-09 08:17:34,506 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=64.6 pTM=0.651 ipTM=0.171 tol=2.25
2024-07-09 08:17:38,233 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=65.2 pTM=0.662 ipTM=0.189 tol=3.05
2024-07-09 08:17:41,963 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.6 pTM=0.676 ipTM=0.209 tol=1.38
2024-07-09 08:17:45,691 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=67.2 pTM=0.681 ipTM=0.217 tol=0.703
2024-07-09 08:17:49,421 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=67.4 pTM=0.682 ipTM=0.226 tol=0.696
2024-07-09 08:17:53,155 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=67.9 pTM=0.688 ipTM=0.235 tol=0.356
2024-07-09 08:17:53,156 alphafold2_multimer_v3_model_5_seed_000 took 26.1s (6 recycles)
2024-07-09 08:17:53,277 reranking models by 'multimer' metric
2024-07-09 08:17:56,060 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 08:18:21,655 Relaxation took 28.4s
2024-07-09 08:18:21,655 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=68.9 pTM=0.679 ipTM=0.249
2024-07-09 08:18:30,529 Relaxation took 8.9s
2024-07-09 08:18:30,529 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=67.9 pTM=0.688 ipTM=0.235
2024-07-09 08:18:41,161 Relaxation took 10.6s
2024-07-09 08:18:41,162 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67.1 pTM=0.674 ipTM=0.231
2024-07-09 08:18:52,350 Relaxation took 11.2s
2024-07-09 08:18:52,350 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=66.6 pTM=0.658 ipTM=0.23
2024-07-09 08:19:04,672 Relaxation took 12.3s
2024-07-09 08:19:04,673 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=65.8 pTM=0.654 ipTM=0.189
2024-07-09 08:19:05,613 Done