2024-07-09 09:05:16,834 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 09:05:17,168 Running on GPU
2024-07-09 09:05:21,033 Found 6 citations for tools or databases
2024-07-09 09:05:21,033 Query 1/1: COX1_HBG2 (length 660)
2024-07-09 09:05:21,505 Sleeping for 6s. Reason: PENDING
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2024-07-09 09:07:38,429 Sleeping for 10s. Reason: PENDING
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2024-07-09 09:10:17,551 Sleeping for 5s. Reason: RUNNING
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2024-07-09 09:10:36,852 Sleeping for 9s. Reason: RUNNING
2024-07-09 09:10:51,213 Setting max_seq=508, max_extra_seq=2048
2024-07-09 09:13:07,253 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=89.7 pTM=0.766 ipTM=0.16
2024-07-09 09:13:16,333 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=90.8 pTM=0.755 ipTM=0.144 tol=7.01
2024-07-09 09:13:25,501 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=91.4 pTM=0.768 ipTM=0.171 tol=11.5
2024-07-09 09:13:34,657 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=91.6 pTM=0.773 ipTM=0.184 tol=0.567
2024-07-09 09:13:43,847 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=91.9 pTM=0.774 ipTM=0.185 tol=0.517
2024-07-09 09:13:53,026 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=91.3 pTM=0.778 ipTM=0.205 tol=0.599
2024-07-09 09:14:02,219 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=91.8 pTM=0.772 ipTM=0.179 tol=0.843
2024-07-09 09:14:11,398 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=91.4 pTM=0.775 ipTM=0.188 tol=0.815
2024-07-09 09:14:20,592 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=91.8 pTM=0.771 ipTM=0.181 tol=0.502
2024-07-09 09:14:29,808 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=91.8 pTM=0.775 ipTM=0.187 tol=0.448
2024-07-09 09:14:29,809 alphafold2_multimer_v3_model_1_seed_000 took 213.3s (9 recycles)
2024-07-09 09:14:39,149 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=88 pTM=0.76 ipTM=0.162
2024-07-09 09:14:48,328 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=91.1 pTM=0.76 ipTM=0.151 tol=11.8
2024-07-09 09:14:57,503 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=90.8 pTM=0.783 ipTM=0.259 tol=6.88
2024-07-09 09:15:06,676 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=91.2 pTM=0.778 ipTM=0.233 tol=2.04
2024-07-09 09:15:15,861 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=92.1 pTM=0.791 ipTM=0.282 tol=0.943
2024-07-09 09:15:25,031 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=91.6 pTM=0.794 ipTM=0.311 tol=0.741
2024-07-09 09:15:34,224 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=92.1 pTM=0.807 ipTM=0.368 tol=0.375
2024-07-09 09:15:34,224 alphafold2_multimer_v3_model_2_seed_000 took 64.1s (6 recycles)
2024-07-09 09:15:43,650 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.8 pTM=0.813 ipTM=0.411
2024-07-09 09:15:52,859 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=89.9 pTM=0.792 ipTM=0.298 tol=2.08
2024-07-09 09:16:02,033 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=89.7 pTM=0.773 ipTM=0.215 tol=1.34
2024-07-09 09:16:11,203 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=89.6 pTM=0.777 ipTM=0.246 tol=0.762
2024-07-09 09:16:20,374 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=89.6 pTM=0.773 ipTM=0.217 tol=0.49
2024-07-09 09:16:20,375 alphafold2_multimer_v3_model_3_seed_000 took 45.9s (4 recycles)
2024-07-09 09:16:29,789 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=88.3 pTM=0.809 ipTM=0.391
2024-07-09 09:16:39,038 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=92.4 pTM=0.822 ipTM=0.437 tol=2.99
2024-07-09 09:16:48,267 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=91.8 pTM=0.793 ipTM=0.283 tol=0.72
2024-07-09 09:16:57,482 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=92 pTM=0.805 ipTM=0.357 tol=1.1
2024-07-09 09:17:06,706 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=91.9 pTM=0.788 ipTM=0.259 tol=1
2024-07-09 09:17:15,922 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=91.4 pTM=0.789 ipTM=0.268 tol=0.872
2024-07-09 09:17:25,146 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=91.6 pTM=0.781 ipTM=0.229 tol=0.823
2024-07-09 09:17:34,354 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=91.4 pTM=0.781 ipTM=0.23 tol=0.886
2024-07-09 09:17:43,563 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=91.4 pTM=0.775 ipTM=0.198 tol=0.83
2024-07-09 09:17:52,787 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=91.8 pTM=0.776 ipTM=0.198 tol=0.77
2024-07-09 09:18:02,003 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=91.4 pTM=0.773 ipTM=0.186 tol=0.903
2024-07-09 09:18:11,204 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=91.3 pTM=0.772 ipTM=0.18 tol=0.579
2024-07-09 09:18:20,437 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=91.7 pTM=0.777 ipTM=0.197 tol=0.74
2024-07-09 09:18:29,643 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=91.4 pTM=0.775 ipTM=0.202 tol=0.627
2024-07-09 09:18:38,858 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=91.4 pTM=0.773 ipTM=0.184 tol=0.469
2024-07-09 09:18:38,858 alphafold2_multimer_v3_model_4_seed_000 took 138.2s (14 recycles)
2024-07-09 09:18:48,272 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=88.1 pTM=0.834 ipTM=0.58
2024-07-09 09:18:57,445 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=90 pTM=0.794 ipTM=0.295 tol=0.743
2024-07-09 09:19:06,715 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=90.8 pTM=0.798 ipTM=0.287 tol=3.16
2024-07-09 09:19:15,963 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=91.4 pTM=0.8 ipTM=0.303 tol=0.992
2024-07-09 09:19:25,233 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=91.6 pTM=0.802 ipTM=0.309 tol=0.384
2024-07-09 09:19:25,233 alphafold2_multimer_v3_model_5_seed_000 took 46.1s (4 recycles)
2024-07-09 09:19:25,512 reranking models by 'multimer' metric
2024-07-09 09:19:28,709 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 09:19:49,293 Relaxation took 23.8s
2024-07-09 09:19:49,293 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=92.1 pTM=0.807 ipTM=0.368
2024-07-09 09:20:06,670 Relaxation took 17.4s
2024-07-09 09:20:06,670 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=91.6 pTM=0.802 ipTM=0.309
2024-07-09 09:20:24,766 Relaxation took 18.1s
2024-07-09 09:20:24,766 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=89.6 pTM=0.773 ipTM=0.217
2024-07-09 09:20:41,874 Relaxation took 17.1s
2024-07-09 09:20:41,874 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=91.8 pTM=0.775 ipTM=0.187
2024-07-09 09:20:57,289 Relaxation took 15.4s
2024-07-09 09:20:57,289 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=91.4 pTM=0.773 ipTM=0.184
2024-07-09 09:20:58,740 Done