2024-07-09 10:11:19,587 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 10:11:19,914 Running on GPU
2024-07-09 10:11:23,710 Found 6 citations for tools or databases
2024-07-09 10:11:23,710 Query 1/1: CPNE3_GFPT1 (length 1236)
2024-07-09 10:11:24,176 Sleeping for 6s. Reason: PENDING
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2024-07-09 10:16:57,483 Sleeping for 5s. Reason: RUNNING
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2024-07-09 10:18:14,076 Setting max_seq=508, max_extra_seq=2048
2024-07-09 10:21:00,032 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.3 pTM=0.447 ipTM=0.244
2024-07-09 10:21:38,167 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.1 pTM=0.522 ipTM=0.174 tol=11.2
2024-07-09 10:22:16,545 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.2 pTM=0.519 ipTM=0.165 tol=9.1
2024-07-09 10:22:55,022 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.9 pTM=0.5 ipTM=0.161 tol=3.67
2024-07-09 10:23:33,570 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.5 pTM=0.479 ipTM=0.157 tol=2.71
2024-07-09 10:24:12,128 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.5 pTM=0.481 ipTM=0.159 tol=1.23
2024-07-09 10:24:50,776 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=81.8 pTM=0.483 ipTM=0.16 tol=2.23
2024-07-09 10:25:29,441 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.7 pTM=0.479 ipTM=0.16 tol=0.876
2024-07-09 10:26:08,118 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81.7 pTM=0.48 ipTM=0.161 tol=1.97
2024-07-09 10:26:46,792 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=81.5 pTM=0.478 ipTM=0.162 tol=1.4
2024-07-09 10:27:25,481 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=81.8 pTM=0.482 ipTM=0.164 tol=1.78
2024-07-09 10:28:04,112 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81.6 pTM=0.481 ipTM=0.167 tol=2.2
2024-07-09 10:28:42,739 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=81.4 pTM=0.481 ipTM=0.166 tol=1.62
2024-07-09 10:29:21,322 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=81.6 pTM=0.481 ipTM=0.167 tol=1.02
2024-07-09 10:29:59,886 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=81.6 pTM=0.49 ipTM=0.177 tol=1.75
2024-07-09 10:30:38,446 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=81.7 pTM=0.486 ipTM=0.172 tol=0.535
2024-07-09 10:31:17,041 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=81.7 pTM=0.483 ipTM=0.168 tol=0.781
2024-07-09 10:31:55,624 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=81.4 pTM=0.484 ipTM=0.17 tol=1.34
2024-07-09 10:32:34,229 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=81.4 pTM=0.478 ipTM=0.168 tol=0.668
2024-07-09 10:33:12,700 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=81.3 pTM=0.476 ipTM=0.168 tol=1.14
2024-07-09 10:33:51,296 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=81.6 pTM=0.481 ipTM=0.171 tol=1.02
2024-07-09 10:34:29,754 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=81.4 pTM=0.477 ipTM=0.166 tol=1.42
2024-07-09 10:35:08,342 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=81.4 pTM=0.478 ipTM=0.165 tol=1.37
2024-07-09 10:35:46,824 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=81.8 pTM=0.482 ipTM=0.17 tol=0.998
2024-07-09 10:36:25,425 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=81.8 pTM=0.482 ipTM=0.172 tol=1.57
2024-07-09 10:37:03,983 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=81.4 pTM=0.477 ipTM=0.169 tol=1.18
2024-07-09 10:37:42,567 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=81.6 pTM=0.478 ipTM=0.166 tol=1.01
2024-07-09 10:38:21,145 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=81.4 pTM=0.473 ipTM=0.165 tol=1.54
2024-07-09 10:38:59,742 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=81.1 pTM=0.473 ipTM=0.163 tol=1.06
2024-07-09 10:39:38,354 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=81.2 pTM=0.475 ipTM=0.164 tol=1.31
2024-07-09 10:40:16,876 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=81.6 pTM=0.481 ipTM=0.166 tol=1.21
2024-07-09 10:40:16,877 alphafold2_multimer_v3_model_1_seed_000 took 1317.3s (30 recycles)
2024-07-09 10:40:56,216 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80.8 pTM=0.438 ipTM=0.217
2024-07-09 10:41:34,709 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.1 pTM=0.43 ipTM=0.179 tol=11
2024-07-09 10:42:13,252 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.3 pTM=0.45 ipTM=0.211 tol=5.96
2024-07-09 10:42:51,763 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=83.8 pTM=0.467 ipTM=0.24 tol=13.7
2024-07-09 10:43:30,268 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82.9 pTM=0.462 ipTM=0.199 tol=2.44
2024-07-09 10:44:08,792 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=82.6 pTM=0.461 ipTM=0.187 tol=3.69
2024-07-09 10:44:47,290 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=82.6 pTM=0.46 ipTM=0.183 tol=2.02
2024-07-09 10:45:25,801 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=82.8 pTM=0.47 ipTM=0.18 tol=2.03
2024-07-09 10:46:04,323 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=82.9 pTM=0.473 ipTM=0.183 tol=1.81
2024-07-09 10:46:42,840 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=82.8 pTM=0.474 ipTM=0.181 tol=1.69
2024-07-09 10:47:21,361 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=83.1 pTM=0.481 ipTM=0.182 tol=1.32
2024-07-09 10:47:59,869 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=82.9 pTM=0.476 ipTM=0.179 tol=0.407
2024-07-09 10:47:59,870 alphafold2_multimer_v3_model_2_seed_000 took 462.1s (11 recycles)
2024-07-09 10:48:39,293 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.1 pTM=0.436 ipTM=0.197
2024-07-09 10:49:17,833 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.4 pTM=0.484 ipTM=0.173 tol=7.75
2024-07-09 10:49:56,348 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.5 pTM=0.538 ipTM=0.179 tol=1.93
2024-07-09 10:50:34,878 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=85.3 pTM=0.529 ipTM=0.162 tol=3.54
2024-07-09 10:51:13,417 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.6 pTM=0.532 ipTM=0.162 tol=1.61
2024-07-09 10:51:51,977 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.6 pTM=0.527 ipTM=0.157 tol=2.68
2024-07-09 10:52:30,544 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.6 pTM=0.527 ipTM=0.16 tol=1.27
2024-07-09 10:53:09,081 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85.5 pTM=0.529 ipTM=0.16 tol=0.795
2024-07-09 10:53:47,479 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=85.6 pTM=0.525 ipTM=0.161 tol=0.889
2024-07-09 10:54:26,006 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=85.4 pTM=0.521 ipTM=0.161 tol=0.51
2024-07-09 10:55:04,528 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=85.5 pTM=0.525 ipTM=0.159 tol=0.391
2024-07-09 10:55:04,529 alphafold2_multimer_v3_model_3_seed_000 took 423.7s (10 recycles)
2024-07-09 10:55:43,973 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=81 pTM=0.429 ipTM=0.184
2024-07-09 10:56:22,451 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.8 pTM=0.455 ipTM=0.173 tol=12.5
2024-07-09 10:57:00,912 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=86.1 pTM=0.626 ipTM=0.526 tol=14.1
2024-07-09 10:57:39,329 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.6 pTM=0.568 ipTM=0.436 tol=0.962
2024-07-09 10:58:17,756 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.9 pTM=0.52 ipTM=0.36 tol=0.674
2024-07-09 10:58:56,100 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.5 pTM=0.491 ipTM=0.293 tol=1.23
2024-07-09 10:59:34,562 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.4 pTM=0.49 ipTM=0.303 tol=0.899
2024-07-09 11:00:13,004 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.4 pTM=0.477 ipTM=0.248 tol=1.41
2024-07-09 11:00:51,388 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.7 pTM=0.458 ipTM=0.203 tol=2.8
2024-07-09 11:01:29,801 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84.5 pTM=0.493 ipTM=0.29 tol=3.72
2024-07-09 11:02:08,173 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.7 pTM=0.468 ipTM=0.207 tol=3.29
2024-07-09 11:02:46,727 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.2 pTM=0.469 ipTM=0.172 tol=8.51
2024-07-09 11:03:25,164 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.3 pTM=0.471 ipTM=0.171 tol=3.33
2024-07-09 11:04:03,672 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=83.7 pTM=0.469 ipTM=0.192 tol=10.4
2024-07-09 11:04:42,179 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=83.6 pTM=0.472 ipTM=0.191 tol=1.29
2024-07-09 11:05:20,611 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=83.4 pTM=0.472 ipTM=0.174 tol=4.19
2024-07-09 11:05:59,127 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=83.8 pTM=0.479 ipTM=0.174 tol=2.93
2024-07-09 11:06:37,625 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=83.8 pTM=0.482 ipTM=0.167 tol=3.1
2024-07-09 11:07:16,190 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.7 pTM=0.483 ipTM=0.169 tol=4.4
2024-07-09 11:07:54,716 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=83.9 pTM=0.482 ipTM=0.168 tol=5
2024-07-09 11:08:33,159 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=83.6 pTM=0.483 ipTM=0.168 tol=4.38
2024-07-09 11:09:11,636 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=84.2 pTM=0.488 ipTM=0.177 tol=7.66
2024-07-09 11:09:50,161 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=83.9 pTM=0.483 ipTM=0.169 tol=4.64
2024-07-09 11:10:28,667 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=83.9 pTM=0.481 ipTM=0.172 tol=3.77
2024-07-09 11:11:07,182 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=83.9 pTM=0.486 ipTM=0.174 tol=2.21
2024-07-09 11:11:45,630 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=83.6 pTM=0.478 ipTM=0.169 tol=4.94
2024-07-09 11:12:24,151 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=83.8 pTM=0.484 ipTM=0.17 tol=5.14
2024-07-09 11:13:02,690 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=83.4 pTM=0.477 ipTM=0.168 tol=2
2024-07-09 11:13:41,209 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=83.5 pTM=0.483 ipTM=0.167 tol=3.51
2024-07-09 11:14:19,720 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=83.8 pTM=0.481 ipTM=0.168 tol=4.49
2024-07-09 11:14:58,191 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=83.8 pTM=0.49 ipTM=0.169 tol=4.78
2024-07-09 11:14:58,192 alphafold2_multimer_v3_model_4_seed_000 took 1192.7s (30 recycles)
2024-07-09 11:15:37,607 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79 pTM=0.421 ipTM=0.184
2024-07-09 11:16:16,238 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.9 pTM=0.415 ipTM=0.166 tol=4.1
2024-07-09 11:16:54,896 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83.2 pTM=0.408 ipTM=0.158 tol=3.56
2024-07-09 11:17:33,483 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.1 pTM=0.492 ipTM=0.161 tol=6.52
2024-07-09 11:18:12,086 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.8 pTM=0.514 ipTM=0.155 tol=4.35
2024-07-09 11:18:50,683 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=84.9 pTM=0.505 ipTM=0.159 tol=0.469
2024-07-09 11:18:50,684 alphafold2_multimer_v3_model_5_seed_000 took 231.6s (5 recycles)
2024-07-09 11:18:51,604 reranking models by 'multimer' metric
2024-07-09 11:18:55,271 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 11:22:04,607 Relaxation took 193.0s
2024-07-09 11:22:04,607 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=82.9 pTM=0.476 ipTM=0.179
2024-07-09 11:24:31,342 Relaxation took 146.7s
2024-07-09 11:24:31,342 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.8 pTM=0.49 ipTM=0.169
2024-07-09 11:25:21,611 Relaxation took 50.3s
2024-07-09 11:25:21,611 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.5 pTM=0.525 ipTM=0.159
2024-07-09 11:27:49,094 Relaxation took 147.5s
2024-07-09 11:27:49,094 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.6 pTM=0.481 ipTM=0.166
2024-07-09 11:28:38,374 Relaxation took 49.3s
2024-07-09 11:28:38,374 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.9 pTM=0.505 ipTM=0.159
2024-07-09 11:28:40,854 Done