2024-07-09 12:38:24,245 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 12:38:24,555 Running on GPU
2024-07-09 12:38:28,519 Found 6 citations for tools or databases
2024-07-09 12:38:28,519 Query 1/1: CRIS1_GGPPS (length 549)
2024-07-09 12:38:28,982 Sleeping for 8s. Reason: PENDING
2024-07-09 12:38:37,406 Sleeping for 10s. Reason: RUNNING
2024-07-09 12:38:47,823 Sleeping for 5s. Reason: RUNNING
2024-07-09 12:38:53,257 Sleeping for 8s. Reason: RUNNING
2024-07-09 12:39:01,703 Sleeping for 7s. Reason: RUNNING
2024-07-09 12:39:09,122 Sleeping for 10s. Reason: RUNNING
2024-07-09 12:39:19,569 Sleeping for 8s. Reason: RUNNING
2024-07-09 12:39:44,261 Sleeping for 7s. Reason: PENDING
2024-07-09 12:39:51,897 Sleeping for 6s. Reason: RUNNING
2024-07-09 12:39:58,315 Sleeping for 10s. Reason: RUNNING
2024-07-09 12:40:08,762 Sleeping for 7s. Reason: RUNNING
2024-07-09 12:40:16,184 Sleeping for 8s. Reason: RUNNING
2024-07-09 12:40:27,097 Setting max_seq=508, max_extra_seq=2048
2024-07-09 12:43:20,826 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82.9 pTM=0.544 ipTM=0.17
2024-07-09 12:43:27,138 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.4 pTM=0.547 ipTM=0.17 tol=2.6
2024-07-09 12:43:33,435 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.1 pTM=0.54 ipTM=0.16 tol=1.12
2024-07-09 12:43:39,733 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=82.8 pTM=0.545 ipTM=0.168 tol=1.69
2024-07-09 12:43:46,039 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=83.2 pTM=0.541 ipTM=0.159 tol=0.801
2024-07-09 12:43:52,353 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.8 pTM=0.544 ipTM=0.17 tol=0.782
2024-07-09 12:43:58,671 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=83.3 pTM=0.546 ipTM=0.174 tol=0.568
2024-07-09 12:44:04,991 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.2 pTM=0.544 ipTM=0.163 tol=1.13
2024-07-09 12:44:11,319 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83 pTM=0.548 ipTM=0.167 tol=0.681
2024-07-09 12:44:17,647 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83 pTM=0.545 ipTM=0.162 tol=0.772
2024-07-09 12:44:23,980 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83 pTM=0.551 ipTM=0.18 tol=0.728
2024-07-09 12:44:30,312 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=83.1 pTM=0.544 ipTM=0.164 tol=1.5
2024-07-09 12:44:36,648 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=82.8 pTM=0.542 ipTM=0.162 tol=1.4
2024-07-09 12:44:42,979 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=82.8 pTM=0.541 ipTM=0.16 tol=0.995
2024-07-09 12:44:49,316 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=82.9 pTM=0.541 ipTM=0.163 tol=0.559
2024-07-09 12:44:55,654 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=82.7 pTM=0.541 ipTM=0.162 tol=0.646
2024-07-09 12:45:01,994 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=82.8 pTM=0.544 ipTM=0.168 tol=0.581
2024-07-09 12:45:08,342 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=82.9 pTM=0.543 ipTM=0.164 tol=0.366
2024-07-09 12:45:08,342 alphafold2_multimer_v3_model_1_seed_000 took 275.9s (17 recycles)
2024-07-09 12:45:14,907 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.9 pTM=0.557 ipTM=0.175
2024-07-09 12:45:21,284 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.1 pTM=0.539 ipTM=0.155 tol=6.36
2024-07-09 12:45:27,658 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=83.7 pTM=0.54 ipTM=0.165 tol=3.94
2024-07-09 12:45:34,044 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.3 pTM=0.533 ipTM=0.159 tol=10.7
2024-07-09 12:45:40,432 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.2 pTM=0.54 ipTM=0.167 tol=8.57
2024-07-09 12:45:46,804 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.2 pTM=0.534 ipTM=0.15 tol=2.95
2024-07-09 12:45:53,183 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.7 pTM=0.542 ipTM=0.164 tol=5.55
2024-07-09 12:45:59,564 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.7 pTM=0.538 ipTM=0.16 tol=2.32
2024-07-09 12:46:05,946 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.8 pTM=0.541 ipTM=0.168 tol=0.849
2024-07-09 12:46:12,335 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=84.9 pTM=0.542 ipTM=0.165 tol=0.939
2024-07-09 12:46:18,720 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.5 pTM=0.537 ipTM=0.164 tol=3.88
2024-07-09 12:46:25,094 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=84.5 pTM=0.541 ipTM=0.161 tol=3.93
2024-07-09 12:46:31,479 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=84.4 pTM=0.535 ipTM=0.157 tol=5.25
2024-07-09 12:46:37,860 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=84.6 pTM=0.541 ipTM=0.165 tol=5.26
2024-07-09 12:46:44,239 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=84.6 pTM=0.538 ipTM=0.157 tol=3.29
2024-07-09 12:46:50,607 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=84.3 pTM=0.544 ipTM=0.164 tol=4.56
2024-07-09 12:46:56,979 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=84.6 pTM=0.537 ipTM=0.157 tol=4.2
2024-07-09 12:47:03,355 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=84.6 pTM=0.544 ipTM=0.166 tol=3.56
2024-07-09 12:47:09,735 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=84.6 pTM=0.54 ipTM=0.159 tol=3.33
2024-07-09 12:47:16,113 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=84.6 pTM=0.545 ipTM=0.165 tol=3.54
2024-07-09 12:47:22,489 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=84.6 pTM=0.539 ipTM=0.161 tol=3.2
2024-07-09 12:47:28,870 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=84.7 pTM=0.541 ipTM=0.161 tol=1.31
2024-07-09 12:47:35,251 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=84.3 pTM=0.536 ipTM=0.163 tol=4.39
2024-07-09 12:47:41,632 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=84.5 pTM=0.542 ipTM=0.17 tol=4.54
2024-07-09 12:47:48,010 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=84.6 pTM=0.537 ipTM=0.16 tol=4.46
2024-07-09 12:47:54,385 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=84.7 pTM=0.542 ipTM=0.16 tol=5.39
2024-07-09 12:48:00,765 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=84.5 pTM=0.536 ipTM=0.157 tol=4.91
2024-07-09 12:48:07,144 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=84.4 pTM=0.542 ipTM=0.161 tol=5.13
2024-07-09 12:48:13,519 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=84.4 pTM=0.539 ipTM=0.161 tol=1.27
2024-07-09 12:48:19,896 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=84.4 pTM=0.541 ipTM=0.164 tol=0.237
2024-07-09 12:48:19,897 alphafold2_multimer_v3_model_2_seed_000 took 191.4s (29 recycles)
2024-07-09 12:48:26,499 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83.3 pTM=0.552 ipTM=0.174
2024-07-09 12:48:32,879 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=83.8 pTM=0.545 ipTM=0.164 tol=4.2
2024-07-09 12:48:39,261 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=83.7 pTM=0.543 ipTM=0.159 tol=4.49
2024-07-09 12:48:45,645 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=83.6 pTM=0.547 ipTM=0.159 tol=3.21
2024-07-09 12:48:52,034 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=83.8 pTM=0.542 ipTM=0.151 tol=0.642
2024-07-09 12:48:58,415 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83.6 pTM=0.548 ipTM=0.157 tol=1.55
2024-07-09 12:49:04,801 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=83.8 pTM=0.542 ipTM=0.152 tol=1.77
2024-07-09 12:49:11,194 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=83.9 pTM=0.552 ipTM=0.159 tol=1.7
2024-07-09 12:49:17,570 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=83.7 pTM=0.546 ipTM=0.156 tol=0.443
2024-07-09 12:49:17,571 alphafold2_multimer_v3_model_3_seed_000 took 57.5s (8 recycles)
2024-07-09 12:49:24,150 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.5 pTM=0.537 ipTM=0.169
2024-07-09 12:49:30,541 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=83.5 pTM=0.534 ipTM=0.151 tol=5.91
2024-07-09 12:49:36,924 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83.8 pTM=0.531 ipTM=0.158 tol=2.34
2024-07-09 12:49:43,316 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=84.1 pTM=0.532 ipTM=0.155 tol=3.04
2024-07-09 12:49:49,694 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.4 pTM=0.529 ipTM=0.159 tol=2.82
2024-07-09 12:49:56,075 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.9 pTM=0.532 ipTM=0.158 tol=4.14
2024-07-09 12:50:02,454 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.9 pTM=0.535 ipTM=0.164 tol=5.47
2024-07-09 12:50:08,821 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83.4 pTM=0.534 ipTM=0.161 tol=1.09
2024-07-09 12:50:15,199 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.4 pTM=0.532 ipTM=0.16 tol=0.773
2024-07-09 12:50:21,569 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.5 pTM=0.535 ipTM=0.163 tol=0.849
2024-07-09 12:50:27,946 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.6 pTM=0.537 ipTM=0.163 tol=0.721
2024-07-09 12:50:34,308 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.3 pTM=0.538 ipTM=0.171 tol=1.36
2024-07-09 12:50:40,686 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.6 pTM=0.536 ipTM=0.165 tol=1.14
2024-07-09 12:50:47,063 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=83.7 pTM=0.536 ipTM=0.163 tol=2.69
2024-07-09 12:50:53,440 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=83.4 pTM=0.535 ipTM=0.168 tol=1.29
2024-07-09 12:50:59,816 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=84 pTM=0.535 ipTM=0.161 tol=1.35
2024-07-09 12:51:06,192 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=83.4 pTM=0.533 ipTM=0.165 tol=1.36
2024-07-09 12:51:12,563 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=84.1 pTM=0.536 ipTM=0.16 tol=1.46
2024-07-09 12:51:18,943 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.8 pTM=0.536 ipTM=0.166 tol=1.56
2024-07-09 12:51:25,324 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=83.9 pTM=0.535 ipTM=0.161 tol=2.81
2024-07-09 12:51:31,694 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=83.2 pTM=0.533 ipTM=0.168 tol=5.37
2024-07-09 12:51:38,077 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=83.8 pTM=0.536 ipTM=0.16 tol=1.21
2024-07-09 12:51:44,457 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=83.3 pTM=0.534 ipTM=0.164 tol=1.72
2024-07-09 12:51:50,840 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=83.9 pTM=0.534 ipTM=0.163 tol=2.73
2024-07-09 12:51:57,219 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=83.5 pTM=0.534 ipTM=0.17 tol=4.31
2024-07-09 12:52:03,598 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=83.9 pTM=0.54 ipTM=0.167 tol=1.45
2024-07-09 12:52:09,973 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=83.6 pTM=0.533 ipTM=0.163 tol=2.78
2024-07-09 12:52:16,348 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=83.8 pTM=0.537 ipTM=0.167 tol=0.882
2024-07-09 12:52:22,729 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=83.3 pTM=0.533 ipTM=0.169 tol=1.42
2024-07-09 12:52:29,100 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=83.8 pTM=0.536 ipTM=0.162 tol=1.68
2024-07-09 12:52:35,480 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=83.8 pTM=0.535 ipTM=0.16 tol=2.96
2024-07-09 12:52:35,481 alphafold2_multimer_v3_model_4_seed_000 took 197.7s (30 recycles)
2024-07-09 12:52:42,082 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.6 pTM=0.554 ipTM=0.173
2024-07-09 12:52:48,501 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=84 pTM=0.546 ipTM=0.154 tol=6.29
2024-07-09 12:52:54,895 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=84 pTM=0.54 ipTM=0.151 tol=3.16
2024-07-09 12:53:01,318 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.6 pTM=0.542 ipTM=0.156 tol=3.27
2024-07-09 12:53:07,733 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.2 pTM=0.544 ipTM=0.159 tol=3.63
2024-07-09 12:53:14,144 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=84.4 pTM=0.542 ipTM=0.156 tol=2.3
2024-07-09 12:53:20,563 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=84.2 pTM=0.543 ipTM=0.164 tol=3.32
2024-07-09 12:53:26,980 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84.2 pTM=0.543 ipTM=0.161 tol=1.08
2024-07-09 12:53:33,389 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=84 pTM=0.544 ipTM=0.167 tol=0.926
2024-07-09 12:53:39,799 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=84.2 pTM=0.543 ipTM=0.159 tol=2.2
2024-07-09 12:53:46,211 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=84 pTM=0.544 ipTM=0.168 tol=0.618
2024-07-09 12:53:52,616 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=84.1 pTM=0.543 ipTM=0.162 tol=0.79
2024-07-09 12:53:59,017 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=84.1 pTM=0.544 ipTM=0.164 tol=1.69
2024-07-09 12:54:05,423 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=84.1 pTM=0.543 ipTM=0.164 tol=0.639
2024-07-09 12:54:11,824 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=83.9 pTM=0.542 ipTM=0.164 tol=0.747
2024-07-09 12:54:18,234 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=84.1 pTM=0.542 ipTM=0.164 tol=0.689
2024-07-09 12:54:24,636 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=83.9 pTM=0.542 ipTM=0.164 tol=0.873
2024-07-09 12:54:31,045 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=83.9 pTM=0.542 ipTM=0.163 tol=0.837
2024-07-09 12:54:37,452 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=83.9 pTM=0.544 ipTM=0.165 tol=0.676
2024-07-09 12:54:43,863 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=84.1 pTM=0.543 ipTM=0.162 tol=1.92
2024-07-09 12:54:50,268 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=83.9 pTM=0.543 ipTM=0.17 tol=2.13
2024-07-09 12:54:56,681 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=84.2 pTM=0.543 ipTM=0.162 tol=1.29
2024-07-09 12:55:03,085 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=84 pTM=0.542 ipTM=0.165 tol=1.08
2024-07-09 12:55:09,484 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=83.8 pTM=0.542 ipTM=0.165 tol=2.14
2024-07-09 12:55:15,880 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=83.8 pTM=0.542 ipTM=0.167 tol=1.17
2024-07-09 12:55:22,284 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=84.1 pTM=0.543 ipTM=0.162 tol=0.414
2024-07-09 12:55:22,284 alphafold2_multimer_v3_model_5_seed_000 took 166.6s (25 recycles)
2024-07-09 12:55:22,484 reranking models by 'multimer' metric
2024-07-09 12:55:25,481 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 12:55:43,453 Relaxation took 21.0s
2024-07-09 12:55:43,453 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.9 pTM=0.543 ipTM=0.164
2024-07-09 12:55:56,838 Relaxation took 13.4s
2024-07-09 12:55:56,838 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.4 pTM=0.541 ipTM=0.164
2024-07-09 12:56:11,074 Relaxation took 14.2s
2024-07-09 12:56:11,075 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.1 pTM=0.543 ipTM=0.162
2024-07-09 12:56:24,401 Relaxation took 13.3s
2024-07-09 12:56:24,401 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.8 pTM=0.535 ipTM=0.16
2024-07-09 12:56:43,532 Relaxation took 19.1s
2024-07-09 12:56:43,533 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=83.7 pTM=0.546 ipTM=0.156
2024-07-09 12:56:44,606 Done