2024-07-09 16:09:55,803 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 16:09:56,136 Running on GPU
2024-07-09 16:10:00,102 Found 6 citations for tools or databases
2024-07-09 16:10:00,103 Query 1/1: DEN2B_CP3A4 (length 1640)
2024-07-09 16:10:00,597 Sleeping for 7s. Reason: PENDING
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2024-07-09 16:10:15,627 Sleeping for 9s. Reason: RUNNING
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2024-07-09 16:11:05,553 Sleeping for 7s. Reason: RUNNING
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2024-07-09 16:11:20,427 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:11:25,870 Sleeping for 7s. Reason: RUNNING
2024-07-09 16:11:33,299 Sleeping for 5s. Reason: RUNNING
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2024-07-09 16:11:48,978 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:11:55,390 Sleeping for 7s. Reason: RUNNING
2024-07-09 16:12:02,808 Sleeping for 9s. Reason: RUNNING
2024-07-09 16:12:12,243 Sleeping for 8s. Reason: RUNNING
2024-07-09 16:12:20,677 Sleeping for 9s. Reason: RUNNING
2024-07-09 16:12:30,093 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:12:35,525 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:12:40,926 Sleeping for 10s. Reason: RUNNING
2024-07-09 16:13:13,352 Sleeping for 6s. Reason: PENDING
2024-07-09 16:13:19,794 Sleeping for 9s. Reason: RUNNING
2024-07-09 16:13:29,210 Sleeping for 10s. Reason: RUNNING
2024-07-09 16:13:39,653 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:13:45,092 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:13:50,526 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:13:56,927 Sleeping for 7s. Reason: RUNNING
2024-07-09 16:14:05,493 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:14:12,035 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:14:17,465 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:14:23,880 Sleeping for 10s. Reason: RUNNING
2024-07-09 16:14:34,294 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:14:40,711 Sleeping for 5s. Reason: RUNNING
2024-07-09 16:14:46,126 Sleeping for 7s. Reason: RUNNING
2024-07-09 16:14:53,574 Sleeping for 9s. Reason: RUNNING
2024-07-09 16:15:03,006 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:15:09,427 Sleeping for 10s. Reason: RUNNING
2024-07-09 16:15:21,397 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:15:27,815 Sleeping for 6s. Reason: RUNNING
2024-07-09 16:15:34,241 Sleeping for 7s. Reason: RUNNING
2024-07-09 16:15:45,869 Setting max_seq=508, max_extra_seq=2048
2024-07-09 16:19:07,351 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=55.4 pTM=0.436 ipTM=0.311
2024-07-09 16:20:30,098 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=55.1 pTM=0.418 ipTM=0.248 tol=13.5
2024-07-09 16:21:52,885 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=55.2 pTM=0.42 ipTM=0.247 tol=9.85
2024-07-09 16:23:15,639 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=55 pTM=0.421 ipTM=0.244 tol=8.9
2024-07-09 16:24:38,373 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=54.8 pTM=0.419 ipTM=0.235 tol=7.61
2024-07-09 16:26:01,154 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=54.8 pTM=0.415 ipTM=0.243 tol=9.67
2024-07-09 16:27:23,931 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=54.8 pTM=0.413 ipTM=0.224 tol=8.42
2024-07-09 16:28:46,680 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54.6 pTM=0.411 ipTM=0.242 tol=4.88
2024-07-09 16:30:09,461 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54.8 pTM=0.41 ipTM=0.218 tol=5.61
2024-07-09 16:31:32,267 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.6 pTM=0.408 ipTM=0.211 tol=6.01
2024-07-09 16:32:55,047 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=54.6 pTM=0.412 ipTM=0.218 tol=4.31
2024-07-09 16:34:17,826 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.6 pTM=0.41 ipTM=0.215 tol=5.81
2024-07-09 16:35:40,616 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=54.8 pTM=0.411 ipTM=0.213 tol=7.89
2024-07-09 16:37:03,414 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.8 pTM=0.409 ipTM=0.211 tol=8.94
2024-07-09 16:38:26,213 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.7 pTM=0.408 ipTM=0.208 tol=4.52
2024-07-09 16:39:49,003 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.8 pTM=0.408 ipTM=0.229 tol=6.89
2024-07-09 16:41:11,802 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=54.9 pTM=0.412 ipTM=0.21 tol=4.62
2024-07-09 16:42:34,617 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.6 pTM=0.407 ipTM=0.208 tol=5.3
2024-07-09 16:43:57,376 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54.4 pTM=0.411 ipTM=0.208 tol=3.74
2024-07-09 16:45:20,167 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.8 pTM=0.408 ipTM=0.226 tol=5
2024-07-09 16:46:42,950 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.5 pTM=0.411 ipTM=0.21 tol=7.19
2024-07-09 16:48:05,775 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=54.6 pTM=0.406 ipTM=0.205 tol=6.77
2024-07-09 16:49:28,539 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.6 pTM=0.412 ipTM=0.212 tol=6.04
2024-07-09 16:50:51,323 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.7 pTM=0.408 ipTM=0.221 tol=3.88
2024-07-09 16:52:14,032 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.4 pTM=0.413 ipTM=0.218 tol=4.72
2024-07-09 16:53:36,821 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.6 pTM=0.408 ipTM=0.21 tol=5.16
2024-07-09 16:54:59,593 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.5 pTM=0.411 ipTM=0.215 tol=3.39
2024-07-09 16:56:22,395 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=54.7 pTM=0.409 ipTM=0.215 tol=5.44
2024-07-09 16:57:45,175 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=54.4 pTM=0.411 ipTM=0.216 tol=6.39
2024-07-09 16:59:07,939 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54.8 pTM=0.408 ipTM=0.219 tol=6.8
2024-07-09 17:00:30,710 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=54.6 pTM=0.411 ipTM=0.214 tol=3.79
2024-07-09 17:00:30,712 alphafold2_multimer_v3_model_1_seed_000 took 2679.8s (30 recycles)
2024-07-09 17:01:55,046 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=55.2 pTM=0.435 ipTM=0.283
2024-07-09 17:03:17,754 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=56 pTM=0.449 ipTM=0.345 tol=17.6
2024-07-09 17:04:40,617 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=55.7 pTM=0.408 ipTM=0.225 tol=10.5
2024-07-09 17:06:03,424 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=55.6 pTM=0.41 ipTM=0.236 tol=11
2024-07-09 17:07:26,253 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=55.8 pTM=0.406 ipTM=0.227 tol=7.79
2024-07-09 17:08:49,095 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55.6 pTM=0.408 ipTM=0.231 tol=5.86
2024-07-09 17:10:11,897 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=55.5 pTM=0.404 ipTM=0.221 tol=5.86
2024-07-09 17:11:34,716 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=55.7 pTM=0.404 ipTM=0.221 tol=5.91
2024-07-09 17:12:57,560 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=55.8 pTM=0.404 ipTM=0.217 tol=5.43
2024-07-09 17:14:20,450 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=55.7 pTM=0.405 ipTM=0.218 tol=4.32
2024-07-09 17:15:43,300 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=55.9 pTM=0.405 ipTM=0.217 tol=6.31
2024-07-09 17:17:06,148 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=56 pTM=0.406 ipTM=0.216 tol=4.64
2024-07-09 17:18:28,988 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=56 pTM=0.404 ipTM=0.209 tol=4.47
2024-07-09 17:19:51,831 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=56 pTM=0.406 ipTM=0.21 tol=7.09
2024-07-09 17:21:14,659 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=55.7 pTM=0.403 ipTM=0.208 tol=7.07
2024-07-09 17:22:37,517 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=55.9 pTM=0.404 ipTM=0.209 tol=5.89
2024-07-09 17:24:00,361 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=55.9 pTM=0.405 ipTM=0.213 tol=4.88
2024-07-09 17:25:23,157 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=55.8 pTM=0.403 ipTM=0.212 tol=4.38
2024-07-09 17:26:45,970 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=55.9 pTM=0.404 ipTM=0.209 tol=4.2
2024-07-09 17:28:08,784 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=55.8 pTM=0.403 ipTM=0.204 tol=5.37
2024-07-09 17:29:31,598 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=55.8 pTM=0.403 ipTM=0.206 tol=4.96
2024-07-09 17:30:54,406 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55.8 pTM=0.403 ipTM=0.207 tol=4.01
2024-07-09 17:32:17,222 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=55.8 pTM=0.403 ipTM=0.205 tol=4.1
2024-07-09 17:33:40,048 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=55.9 pTM=0.404 ipTM=0.208 tol=3.09
2024-07-09 17:35:02,869 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=55.9 pTM=0.405 ipTM=0.208 tol=3.6
2024-07-09 17:36:25,684 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.9 pTM=0.405 ipTM=0.208 tol=3.93
2024-07-09 17:37:48,500 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55.9 pTM=0.404 ipTM=0.208 tol=3.19
2024-07-09 17:39:11,333 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=56 pTM=0.405 ipTM=0.207 tol=3.21
2024-07-09 17:40:34,147 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.7 pTM=0.402 ipTM=0.205 tol=2.9
2024-07-09 17:41:56,953 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.8 pTM=0.405 ipTM=0.21 tol=3.21
2024-07-09 17:43:19,775 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=55.9 pTM=0.404 ipTM=0.21 tol=3.29
2024-07-09 17:43:19,777 alphafold2_multimer_v3_model_2_seed_000 took 2567.5s (30 recycles)
2024-07-09 17:44:44,422 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=54.7 pTM=0.404 ipTM=0.186
2024-07-09 17:46:07,496 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=55 pTM=0.418 ipTM=0.241 tol=17.8
2024-07-09 17:47:30,512 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=54.6 pTM=0.407 ipTM=0.216 tol=14.5
2024-07-09 17:48:53,562 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=54.6 pTM=0.416 ipTM=0.235 tol=9.6
2024-07-09 17:50:16,546 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=54.6 pTM=0.413 ipTM=0.224 tol=5.92
2024-07-09 17:51:39,545 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=54.5 pTM=0.413 ipTM=0.224 tol=3.95
2024-07-09 17:53:02,495 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55 pTM=0.422 ipTM=0.249 tol=5.86
2024-07-09 17:54:25,441 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.1 pTM=0.414 ipTM=0.233 tol=4.48
2024-07-09 17:55:48,493 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=54.9 pTM=0.412 ipTM=0.223 tol=4.2
2024-07-09 17:57:11,406 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.1 pTM=0.423 ipTM=0.262 tol=4.23
2024-07-09 17:58:34,324 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.4 pTM=0.427 ipTM=0.271 tol=3.06
2024-07-09 17:59:57,253 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.5 pTM=0.429 ipTM=0.274 tol=9.52
2024-07-09 18:01:20,168 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=55.5 pTM=0.427 ipTM=0.266 tol=7.07
2024-07-09 18:02:43,081 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.9 pTM=0.44 ipTM=0.314 tol=4.83
2024-07-09 18:04:05,977 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.5 pTM=0.426 ipTM=0.268 tol=2.79
2024-07-09 18:05:28,906 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.4 pTM=0.429 ipTM=0.276 tol=2.47
2024-07-09 18:06:51,823 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.8 pTM=0.427 ipTM=0.266 tol=2.46
2024-07-09 18:08:14,741 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.2 pTM=0.426 ipTM=0.26 tol=1.68
2024-07-09 18:09:37,663 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=55.6 pTM=0.427 ipTM=0.271 tol=4.02
2024-07-09 18:11:00,593 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.6 pTM=0.43 ipTM=0.285 tol=3.8
2024-07-09 18:12:23,511 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=55.7 pTM=0.43 ipTM=0.288 tol=2.79
2024-07-09 18:13:46,435 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.7 pTM=0.433 ipTM=0.301 tol=2.11
2024-07-09 18:15:09,331 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.8 pTM=0.434 ipTM=0.302 tol=2.82
2024-07-09 18:16:32,218 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.7 pTM=0.435 ipTM=0.309 tol=1.57
2024-07-09 18:17:55,103 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.6 pTM=0.433 ipTM=0.299 tol=1.92
2024-07-09 18:19:17,949 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.7 pTM=0.444 ipTM=0.342 tol=1.71
2024-07-09 18:20:40,798 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.6 pTM=0.435 ipTM=0.313 tol=2.87
2024-07-09 18:22:03,646 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.7 pTM=0.443 ipTM=0.339 tol=3.28
2024-07-09 18:23:26,497 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55.6 pTM=0.433 ipTM=0.3 tol=1.84
2024-07-09 18:24:49,379 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.2 pTM=0.427 ipTM=0.273 tol=1.96
2024-07-09 18:26:12,221 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.9 pTM=0.445 ipTM=0.345 tol=3.44
2024-07-09 18:26:12,222 alphafold2_multimer_v3_model_3_seed_000 took 2570.9s (30 recycles)
2024-07-09 18:27:36,682 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=54.9 pTM=0.429 ipTM=0.266
2024-07-09 18:28:59,691 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=54.1 pTM=0.411 ipTM=0.231 tol=24
2024-07-09 18:30:22,690 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=54.2 pTM=0.412 ipTM=0.229 tol=13
2024-07-09 18:31:45,624 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=54.2 pTM=0.412 ipTM=0.24 tol=9.04
2024-07-09 18:33:08,604 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=53.8 pTM=0.412 ipTM=0.245 tol=7.81
2024-07-09 18:34:31,626 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=54.3 pTM=0.413 ipTM=0.246 tol=9.69
2024-07-09 18:35:54,703 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=53.8 pTM=0.412 ipTM=0.241 tol=8.52
2024-07-09 18:37:17,812 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=54.2 pTM=0.403 ipTM=0.221 tol=8.6
2024-07-09 18:38:40,889 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54 pTM=0.41 ipTM=0.239 tol=10
2024-07-09 18:40:03,941 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=54 pTM=0.41 ipTM=0.238 tol=8.12
2024-07-09 18:41:27,019 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=53.7 pTM=0.411 ipTM=0.245 tol=8.05
2024-07-09 18:42:50,058 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=54.1 pTM=0.417 ipTM=0.258 tol=9.09
2024-07-09 18:44:13,101 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=53.9 pTM=0.408 ipTM=0.234 tol=8.47
2024-07-09 18:45:36,227 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=53.9 pTM=0.41 ipTM=0.234 tol=4.34
2024-07-09 18:46:59,333 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=53.8 pTM=0.407 ipTM=0.229 tol=3.87
2024-07-09 18:48:22,444 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=53.5 pTM=0.408 ipTM=0.235 tol=9.53
2024-07-09 18:49:45,422 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=54.1 pTM=0.42 ipTM=0.268 tol=9.5
2024-07-09 18:51:08,362 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=53.9 pTM=0.413 ipTM=0.259 tol=3.63
2024-07-09 18:52:31,389 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=53.6 pTM=0.409 ipTM=0.241 tol=4.97
2024-07-09 18:53:54,467 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=53.9 pTM=0.409 ipTM=0.239 tol=8.36
2024-07-09 18:55:17,489 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=53.6 pTM=0.41 ipTM=0.239 tol=7.16
2024-07-09 18:56:40,462 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=53.8 pTM=0.413 ipTM=0.249 tol=8.96
2024-07-09 18:58:03,483 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=53.7 pTM=0.409 ipTM=0.239 tol=8.25
2024-07-09 18:59:26,528 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=53.8 pTM=0.411 ipTM=0.243 tol=5.65
2024-07-09 19:00:49,558 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=53.6 pTM=0.411 ipTM=0.244 tol=8.29
2024-07-09 19:02:12,508 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=53.8 pTM=0.414 ipTM=0.259 tol=8.33
2024-07-09 19:03:35,537 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=53.6 pTM=0.41 ipTM=0.243 tol=8.93
2024-07-09 19:04:58,549 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=53.8 pTM=0.409 ipTM=0.245 tol=6.65
2024-07-09 19:06:21,539 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=53.7 pTM=0.408 ipTM=0.24 tol=8.95
2024-07-09 19:07:44,539 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=53.7 pTM=0.407 ipTM=0.238 tol=6.15
2024-07-09 19:09:07,546 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=53.8 pTM=0.409 ipTM=0.239 tol=7.65
2024-07-09 19:09:07,548 alphafold2_multimer_v3_model_4_seed_000 took 2573.7s (30 recycles)
2024-07-09 19:10:32,099 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=55 pTM=0.417 ipTM=0.236
2024-07-09 19:11:55,125 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=54.9 pTM=0.423 ipTM=0.261 tol=19.1
2024-07-09 19:13:18,207 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=55.2 pTM=0.409 ipTM=0.21 tol=9.8
2024-07-09 19:14:41,284 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=54.6 pTM=0.409 ipTM=0.225 tol=6.81
2024-07-09 19:16:04,361 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=55.1 pTM=0.408 ipTM=0.218 tol=7.2
2024-07-09 19:17:27,446 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=54.7 pTM=0.41 ipTM=0.23 tol=6.03
2024-07-09 19:18:50,563 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55 pTM=0.408 ipTM=0.224 tol=9.92
2024-07-09 19:20:13,664 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=54.8 pTM=0.406 ipTM=0.215 tol=10.6
2024-07-09 19:21:36,818 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.1 pTM=0.406 ipTM=0.213 tol=7.19
2024-07-09 19:22:59,917 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=54.6 pTM=0.407 ipTM=0.22 tol=6.82
2024-07-09 19:24:23,026 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55 pTM=0.407 ipTM=0.223 tol=12.4
2024-07-09 19:25:46,171 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=54.8 pTM=0.406 ipTM=0.221 tol=10
2024-07-09 19:27:09,307 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.2 pTM=0.407 ipTM=0.215 tol=10.3
2024-07-09 19:28:32,406 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=54.8 pTM=0.411 ipTM=0.227 tol=9.6
2024-07-09 19:29:55,537 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=54.8 pTM=0.406 ipTM=0.222 tol=9.95
2024-07-09 19:31:18,659 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=54.8 pTM=0.407 ipTM=0.222 tol=10.5
2024-07-09 19:32:41,833 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.3 pTM=0.409 ipTM=0.213 tol=9.03
2024-07-09 19:34:04,933 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=54.7 pTM=0.407 ipTM=0.218 tol=10.8
2024-07-09 19:35:28,056 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=54.8 pTM=0.412 ipTM=0.225 tol=9.15
2024-07-09 19:36:51,139 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=54.7 pTM=0.413 ipTM=0.23 tol=10.7
2024-07-09 19:38:14,270 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55 pTM=0.412 ipTM=0.226 tol=9.35
2024-07-09 19:39:37,383 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=54.7 pTM=0.41 ipTM=0.23 tol=12.9
2024-07-09 19:41:00,538 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55 pTM=0.41 ipTM=0.224 tol=12.2
2024-07-09 19:42:23,649 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=54.6 pTM=0.412 ipTM=0.231 tol=14.2
2024-07-09 19:43:46,805 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=54.8 pTM=0.407 ipTM=0.218 tol=12.2
2024-07-09 19:45:09,852 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=54.6 pTM=0.411 ipTM=0.228 tol=12.3
2024-07-09 19:46:32,913 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=54.8 pTM=0.408 ipTM=0.219 tol=7.25
2024-07-09 19:47:55,989 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=54.6 pTM=0.408 ipTM=0.222 tol=10.8
2024-07-09 19:49:19,043 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=54.8 pTM=0.405 ipTM=0.21 tol=10.8
2024-07-09 19:50:42,099 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=54.6 pTM=0.404 ipTM=0.212 tol=5.17
2024-07-09 19:52:05,131 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=54.9 pTM=0.411 ipTM=0.227 tol=6.66
2024-07-09 19:52:05,133 alphafold2_multimer_v3_model_5_seed_000 took 2576.0s (30 recycles)
2024-07-09 19:52:06,708 reranking models by 'multimer' metric
2024-07-09 19:52:08,676 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 19:54:24,566 Relaxation took 137.9s
2024-07-09 19:54:24,566 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.9 pTM=0.445 ipTM=0.345
2024-07-09 20:09:03,919 Relaxation took 879.4s
2024-07-09 20:09:03,919 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=53.8 pTM=0.409 ipTM=0.239
2024-07-09 20:13:45,376 Relaxation took 281.5s
2024-07-09 20:13:45,377 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=54.9 pTM=0.411 ipTM=0.227
2024-07-09 20:17:45,851 Relaxation took 240.5s
2024-07-09 20:17:45,852 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=54.6 pTM=0.411 ipTM=0.214
2024-07-09 20:20:32,513 Relaxation took 166.7s
2024-07-09 20:20:32,513 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=55.9 pTM=0.404 ipTM=0.21
2024-07-09 20:20:36,259 Done