2024-07-09 17:08:51,649 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 17:08:51,956 Running on GPU
2024-07-09 17:08:54,779 Found 6 citations for tools or databases
2024-07-09 17:08:54,779 Query 1/1: DHSO_B3GT4 (length 735)
2024-07-09 17:08:55,214 Sleeping for 6s. Reason: PENDING
2024-07-09 17:09:01,634 Sleeping for 8s. Reason: RUNNING
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2024-07-09 17:09:58,031 Sleeping for 6s. Reason: RUNNING
2024-07-09 17:10:04,446 Sleeping for 5s. Reason: RUNNING
2024-07-09 17:10:09,883 Sleeping for 6s. Reason: RUNNING
2024-07-09 17:10:16,825 Sleeping for 5s. Reason: RUNNING
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2024-07-09 17:10:30,665 Sleeping for 7s. Reason: RUNNING
2024-07-09 17:10:38,098 Sleeping for 6s. Reason: RUNNING
2024-07-09 17:10:44,517 Sleeping for 5s. Reason: RUNNING
2024-07-09 17:10:50,959 Sleeping for 6s. Reason: RUNNING
2024-07-09 17:10:57,404 Sleeping for 9s. Reason: RUNNING
2024-07-09 17:11:06,840 Sleeping for 6s. Reason: RUNNING
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2024-07-09 17:11:31,124 Sleeping for 7s. Reason: RUNNING
2024-07-09 17:11:55,762 Sleeping for 9s. Reason: PENDING
2024-07-09 17:12:05,216 Sleeping for 5s. Reason: RUNNING
2024-07-09 17:12:10,620 Sleeping for 10s. Reason: RUNNING
2024-07-09 17:12:21,040 Sleeping for 10s. Reason: RUNNING
2024-07-09 17:12:31,471 Sleeping for 9s. Reason: RUNNING
2024-07-09 17:12:40,879 Sleeping for 5s. Reason: RUNNING
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2024-07-09 17:13:04,131 Sleeping for 7s. Reason: RUNNING
2024-07-09 17:13:11,595 Sleeping for 7s. Reason: RUNNING
2024-07-09 17:13:19,015 Sleeping for 10s. Reason: RUNNING
2024-07-09 17:13:29,460 Sleeping for 6s. Reason: RUNNING
2024-07-09 17:13:35,876 Sleeping for 6s. Reason: RUNNING
2024-07-09 17:13:42,297 Sleeping for 9s. Reason: RUNNING
2024-07-09 17:13:51,719 Sleeping for 7s. Reason: RUNNING
2024-07-09 17:13:59,156 Sleeping for 5s. Reason: RUNNING
2024-07-09 17:14:05,109 Sleeping for 10s. Reason: RUNNING
2024-07-09 17:14:15,545 Sleeping for 8s. Reason: RUNNING
2024-07-09 17:14:26,708 Setting max_seq=508, max_extra_seq=2048
2024-07-09 17:17:11,118 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=84.6 pTM=0.518 ipTM=0.125
2024-07-09 17:17:21,805 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=86.4 pTM=0.539 ipTM=0.179 tol=5.64
2024-07-09 17:17:32,488 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=86.2 pTM=0.548 ipTM=0.204 tol=0.9
2024-07-09 17:17:43,199 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=86.1 pTM=0.55 ipTM=0.207 tol=0.301
2024-07-09 17:17:43,199 alphafold2_multimer_v3_model_1_seed_000 took 192.9s (3 recycles)
2024-07-09 17:17:54,263 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.7 pTM=0.517 ipTM=0.138
2024-07-09 17:18:04,996 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=86.8 pTM=0.534 ipTM=0.162 tol=5.56
2024-07-09 17:18:15,742 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=86.9 pTM=0.537 ipTM=0.166 tol=3.99
2024-07-09 17:18:26,491 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.8 pTM=0.535 ipTM=0.167 tol=2.04
2024-07-09 17:18:37,244 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=87.1 pTM=0.535 ipTM=0.168 tol=0.921
2024-07-09 17:18:47,999 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=87.1 pTM=0.536 ipTM=0.164 tol=0.73
2024-07-09 17:18:58,757 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=87.1 pTM=0.537 ipTM=0.164 tol=0.543
2024-07-09 17:19:09,540 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=87.2 pTM=0.537 ipTM=0.166 tol=0.465
2024-07-09 17:19:09,541 alphafold2_multimer_v3_model_2_seed_000 took 86.0s (7 recycles)
2024-07-09 17:19:20,620 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.2 pTM=0.519 ipTM=0.144
2024-07-09 17:19:31,403 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=85.6 pTM=0.533 ipTM=0.154 tol=3.61
2024-07-09 17:19:42,197 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.1 pTM=0.537 ipTM=0.155 tol=1.73
2024-07-09 17:19:52,962 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.9 pTM=0.539 ipTM=0.162 tol=0.984
2024-07-09 17:20:03,747 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.2 pTM=0.543 ipTM=0.173 tol=1.91
2024-07-09 17:20:14,512 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.3 pTM=0.544 ipTM=0.178 tol=0.614
2024-07-09 17:20:25,278 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.4 pTM=0.546 ipTM=0.185 tol=0.522
2024-07-09 17:20:36,044 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85.3 pTM=0.544 ipTM=0.183 tol=0.487
2024-07-09 17:20:36,045 alphafold2_multimer_v3_model_3_seed_000 took 86.2s (7 recycles)
2024-07-09 17:20:47,215 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.7 pTM=0.519 ipTM=0.142
2024-07-09 17:20:58,059 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=86.4 pTM=0.535 ipTM=0.178 tol=8.3
2024-07-09 17:21:08,888 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=86.3 pTM=0.528 ipTM=0.175 tol=3.49
2024-07-09 17:21:19,702 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=86.1 pTM=0.527 ipTM=0.174 tol=3.3
2024-07-09 17:21:30,529 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=86.3 pTM=0.534 ipTM=0.184 tol=1.42
2024-07-09 17:21:41,353 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=86.3 pTM=0.532 ipTM=0.187 tol=0.716
2024-07-09 17:21:52,174 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=86.3 pTM=0.535 ipTM=0.191 tol=0.986
2024-07-09 17:22:02,999 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=86.4 pTM=0.535 ipTM=0.187 tol=0.396
2024-07-09 17:22:03,000 alphafold2_multimer_v3_model_4_seed_000 took 86.6s (7 recycles)
2024-07-09 17:22:14,104 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=84.1 pTM=0.544 ipTM=0.185
2024-07-09 17:22:24,931 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.9 pTM=0.546 ipTM=0.178 tol=3.24
2024-07-09 17:22:35,760 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.9 pTM=0.546 ipTM=0.176 tol=1.62
2024-07-09 17:22:46,563 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=85.7 pTM=0.547 ipTM=0.181 tol=2.75
2024-07-09 17:22:57,377 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85.9 pTM=0.544 ipTM=0.177 tol=0.664
2024-07-09 17:23:08,196 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.8 pTM=0.548 ipTM=0.184 tol=0.94
2024-07-09 17:23:19,002 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85.8 pTM=0.548 ipTM=0.185 tol=1.18
2024-07-09 17:23:29,814 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=86 pTM=0.545 ipTM=0.18 tol=0.238
2024-07-09 17:23:29,815 alphafold2_multimer_v3_model_5_seed_000 took 86.5s (7 recycles)
2024-07-09 17:23:30,155 reranking models by 'multimer' metric
2024-07-09 17:23:33,449 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 17:23:57,532 Relaxation took 27.4s
2024-07-09 17:23:57,533 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=86.1 pTM=0.55 ipTM=0.207
2024-07-09 17:24:44,608 Relaxation took 47.1s
2024-07-09 17:24:44,608 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=86.4 pTM=0.535 ipTM=0.187
2024-07-09 17:25:42,133 Relaxation took 57.5s
2024-07-09 17:25:42,133 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.3 pTM=0.544 ipTM=0.183
2024-07-09 17:26:01,893 Relaxation took 19.8s
2024-07-09 17:26:01,893 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=86 pTM=0.545 ipTM=0.18
2024-07-09 17:26:22,888 Relaxation took 21.0s
2024-07-09 17:26:22,888 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.2 pTM=0.537 ipTM=0.166
2024-07-09 17:26:24,221 Done