2024-07-09 18:40:03,411 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 18:40:03,715 Running on GPU
2024-07-09 18:40:07,267 Found 6 citations for tools or databases
2024-07-09 18:40:07,267 Query 1/1: DKKL1_MRM3 (length 662)
2024-07-09 18:40:07,712 Sleeping for 5s. Reason: PENDING
2024-07-09 18:40:13,146 Sleeping for 10s. Reason: RUNNING
2024-07-09 18:40:23,593 Sleeping for 6s. Reason: RUNNING
2024-07-09 18:40:30,047 Sleeping for 6s. Reason: RUNNING
2024-07-09 18:40:36,467 Sleeping for 7s. Reason: RUNNING
2024-07-09 18:40:43,886 Sleeping for 7s. Reason: RUNNING
2024-07-09 18:40:51,301 Sleeping for 7s. Reason: RUNNING
2024-07-09 18:40:58,729 Sleeping for 8s. Reason: RUNNING
2024-07-09 18:41:09,042 Sleeping for 5s. Reason: PENDING
2024-07-09 18:41:14,460 Sleeping for 7s. Reason: RUNNING
2024-07-09 18:41:21,876 Sleeping for 5s. Reason: RUNNING
2024-07-09 18:41:27,289 Sleeping for 6s. Reason: RUNNING
2024-07-09 18:41:33,709 Sleeping for 6s. Reason: RUNNING
2024-07-09 18:41:40,131 Sleeping for 6s. Reason: RUNNING
2024-07-09 18:41:48,095 Setting max_seq=508, max_extra_seq=2048
2024-07-09 18:44:23,078 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=52.9 pTM=0.5 ipTM=0.139
2024-07-09 18:44:32,061 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=53.8 pTM=0.508 ipTM=0.15 tol=7.18
2024-07-09 18:44:41,042 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=53.9 pTM=0.511 ipTM=0.159 tol=5.06
2024-07-09 18:44:50,024 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.6 pTM=0.508 ipTM=0.158 tol=6.39
2024-07-09 18:44:59,021 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.8 pTM=0.511 ipTM=0.167 tol=5.44
2024-07-09 18:45:08,021 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.9 pTM=0.51 ipTM=0.163 tol=1.73
2024-07-09 18:45:17,024 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=53.8 pTM=0.51 ipTM=0.161 tol=3.8
2024-07-09 18:45:26,033 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=53.7 pTM=0.51 ipTM=0.162 tol=2.24
2024-07-09 18:45:35,048 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54 pTM=0.51 ipTM=0.161 tol=2.71
2024-07-09 18:45:44,076 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=54.5 pTM=0.511 ipTM=0.16 tol=3.2
2024-07-09 18:45:53,092 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=54 pTM=0.511 ipTM=0.161 tol=2.07
2024-07-09 18:46:02,108 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=54.1 pTM=0.511 ipTM=0.161 tol=1.79
2024-07-09 18:46:11,124 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=53.8 pTM=0.51 ipTM=0.161 tol=1.51
2024-07-09 18:46:20,147 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.2 pTM=0.51 ipTM=0.16 tol=1.76
2024-07-09 18:46:29,185 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=53.8 pTM=0.511 ipTM=0.163 tol=1.33
2024-07-09 18:46:38,214 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=53.8 pTM=0.51 ipTM=0.164 tol=1.25
2024-07-09 18:46:47,247 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=53.8 pTM=0.511 ipTM=0.163 tol=2.06
2024-07-09 18:46:56,273 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=53.7 pTM=0.51 ipTM=0.162 tol=1.96
2024-07-09 18:47:05,296 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=54 pTM=0.511 ipTM=0.164 tol=2.12
2024-07-09 18:47:14,340 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54 pTM=0.51 ipTM=0.161 tol=1.31
2024-07-09 18:47:23,376 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=53.8 pTM=0.51 ipTM=0.162 tol=1.46
2024-07-09 18:47:32,417 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=53.8 pTM=0.51 ipTM=0.159 tol=1.72
2024-07-09 18:47:41,431 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=53.6 pTM=0.509 ipTM=0.161 tol=2.82
2024-07-09 18:47:50,489 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.1 pTM=0.511 ipTM=0.159 tol=2
2024-07-09 18:47:59,527 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=53.8 pTM=0.51 ipTM=0.16 tol=1.56
2024-07-09 18:48:08,571 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54 pTM=0.512 ipTM=0.162 tol=0.985
2024-07-09 18:48:17,616 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=53.8 pTM=0.509 ipTM=0.158 tol=1.68
2024-07-09 18:48:26,661 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=53.9 pTM=0.51 ipTM=0.162 tol=1.87
2024-07-09 18:48:35,697 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=53.8 pTM=0.511 ipTM=0.162 tol=1.52
2024-07-09 18:48:44,751 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=54 pTM=0.512 ipTM=0.161 tol=1.5
2024-07-09 18:48:53,797 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=53.9 pTM=0.51 ipTM=0.161 tol=1.21
2024-07-09 18:48:53,798 alphafold2_multimer_v3_model_1_seed_000 took 420.7s (30 recycles)
2024-07-09 18:49:03,142 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=52.7 pTM=0.506 ipTM=0.148
2024-07-09 18:49:12,199 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=54.2 pTM=0.518 ipTM=0.17 tol=12.5
2024-07-09 18:49:21,287 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=54.8 pTM=0.516 ipTM=0.163 tol=9.91
2024-07-09 18:49:30,365 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=54.5 pTM=0.513 ipTM=0.156 tol=4.41
2024-07-09 18:49:39,448 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=55.2 pTM=0.514 ipTM=0.155 tol=3.48
2024-07-09 18:49:48,539 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=55 pTM=0.514 ipTM=0.158 tol=3.93
2024-07-09 18:49:57,625 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=55 pTM=0.511 ipTM=0.147 tol=4.05
2024-07-09 18:50:06,716 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=54.8 pTM=0.511 ipTM=0.146 tol=7
2024-07-09 18:50:15,811 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=54.8 pTM=0.509 ipTM=0.143 tol=7.34
2024-07-09 18:50:24,919 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=55.3 pTM=0.51 ipTM=0.147 tol=5
2024-07-09 18:50:34,005 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=55.2 pTM=0.512 ipTM=0.151 tol=4.74
2024-07-09 18:50:43,105 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=55.1 pTM=0.513 ipTM=0.161 tol=2.52
2024-07-09 18:50:52,200 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=55 pTM=0.51 ipTM=0.149 tol=2.97
2024-07-09 18:51:01,300 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=55 pTM=0.511 ipTM=0.154 tol=2.79
2024-07-09 18:51:10,396 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=55 pTM=0.51 ipTM=0.159 tol=1.11
2024-07-09 18:51:19,477 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=55.1 pTM=0.509 ipTM=0.16 tol=1.06
2024-07-09 18:51:28,558 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=55.1 pTM=0.509 ipTM=0.163 tol=1.06
2024-07-09 18:51:37,655 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=55 pTM=0.508 ipTM=0.151 tol=1.45
2024-07-09 18:51:46,760 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=55.5 pTM=0.51 ipTM=0.172 tol=1.83
2024-07-09 18:51:55,850 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=55.2 pTM=0.509 ipTM=0.157 tol=1.32
2024-07-09 18:52:04,951 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=55.3 pTM=0.511 ipTM=0.157 tol=1.36
2024-07-09 18:52:14,047 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=55.2 pTM=0.51 ipTM=0.159 tol=1.02
2024-07-09 18:52:23,137 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=55.1 pTM=0.509 ipTM=0.155 tol=1.43
2024-07-09 18:52:32,226 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=55.3 pTM=0.51 ipTM=0.165 tol=1.49
2024-07-09 18:52:41,316 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=55.3 pTM=0.51 ipTM=0.159 tol=1.31
2024-07-09 18:52:50,411 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=55.2 pTM=0.509 ipTM=0.159 tol=1.21
2024-07-09 18:52:59,506 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=55 pTM=0.507 ipTM=0.157 tol=0.988
2024-07-09 18:53:08,612 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=55.3 pTM=0.509 ipTM=0.154 tol=1.42
2024-07-09 18:53:17,703 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=55.1 pTM=0.509 ipTM=0.147 tol=1.43
2024-07-09 18:53:26,804 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=55.3 pTM=0.51 ipTM=0.147 tol=2.06
2024-07-09 18:53:35,889 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=55 pTM=0.508 ipTM=0.146 tol=1.93
2024-07-09 18:53:35,890 alphafold2_multimer_v3_model_2_seed_000 took 281.8s (30 recycles)
2024-07-09 18:53:45,253 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=51.8 pTM=0.505 ipTM=0.189
2024-07-09 18:53:54,339 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=52.6 pTM=0.514 ipTM=0.169 tol=10.7
2024-07-09 18:54:03,387 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=53.8 pTM=0.517 ipTM=0.183 tol=9.46
2024-07-09 18:54:12,433 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=53.7 pTM=0.52 ipTM=0.196 tol=5.77
2024-07-09 18:54:21,480 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=54 pTM=0.522 ipTM=0.198 tol=2.98
2024-07-09 18:54:30,507 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=53.8 pTM=0.521 ipTM=0.2 tol=1.23
2024-07-09 18:54:39,536 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=54.2 pTM=0.526 ipTM=0.213 tol=2.23
2024-07-09 18:54:48,597 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=54.1 pTM=0.524 ipTM=0.205 tol=1.59
2024-07-09 18:54:57,639 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=54.2 pTM=0.523 ipTM=0.201 tol=2.55
2024-07-09 18:55:06,691 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=54.4 pTM=0.526 ipTM=0.21 tol=3.33
2024-07-09 18:55:15,747 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=54.2 pTM=0.524 ipTM=0.205 tol=1.98
2024-07-09 18:55:24,796 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=54.4 pTM=0.526 ipTM=0.207 tol=2.38
2024-07-09 18:55:33,830 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=54.1 pTM=0.524 ipTM=0.205 tol=1.8
2024-07-09 18:55:42,866 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=54.2 pTM=0.523 ipTM=0.207 tol=1.19
2024-07-09 18:55:51,902 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=54 pTM=0.522 ipTM=0.203 tol=1.42
2024-07-09 18:56:00,933 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=54 pTM=0.523 ipTM=0.201 tol=1.66
2024-07-09 18:56:09,971 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=54.1 pTM=0.525 ipTM=0.207 tol=2.17
2024-07-09 18:56:19,033 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=54.2 pTM=0.527 ipTM=0.21 tol=1.44
2024-07-09 18:56:28,060 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=54.3 pTM=0.525 ipTM=0.207 tol=0.749
2024-07-09 18:56:37,104 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=54.4 pTM=0.523 ipTM=0.2 tol=1.04
2024-07-09 18:56:46,144 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=54.3 pTM=0.526 ipTM=0.21 tol=1.41
2024-07-09 18:56:55,174 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=54 pTM=0.521 ipTM=0.198 tol=1.04
2024-07-09 18:57:04,205 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=54 pTM=0.524 ipTM=0.207 tol=1.25
2024-07-09 18:57:13,251 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=54.1 pTM=0.523 ipTM=0.203 tol=1.23
2024-07-09 18:57:22,308 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=54.2 pTM=0.525 ipTM=0.208 tol=0.919
2024-07-09 18:57:31,339 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=54.4 pTM=0.524 ipTM=0.203 tol=1.15
2024-07-09 18:57:40,372 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=53.9 pTM=0.523 ipTM=0.205 tol=1.6
2024-07-09 18:57:49,411 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=53.9 pTM=0.524 ipTM=0.205 tol=1.3
2024-07-09 18:57:58,432 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=54 pTM=0.522 ipTM=0.204 tol=1.19
2024-07-09 18:58:07,471 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=54.3 pTM=0.526 ipTM=0.211 tol=1.86
2024-07-09 18:58:16,510 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=54.2 pTM=0.525 ipTM=0.207 tol=1.73
2024-07-09 18:58:16,511 alphafold2_multimer_v3_model_3_seed_000 took 280.3s (30 recycles)
2024-07-09 18:58:25,903 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=51.8 pTM=0.507 ipTM=0.148
2024-07-09 18:58:34,996 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=52.8 pTM=0.516 ipTM=0.152 tol=15.2
2024-07-09 18:58:44,113 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=52.6 pTM=0.515 ipTM=0.163 tol=12.2
2024-07-09 18:58:53,228 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=52.8 pTM=0.514 ipTM=0.151 tol=4.32
2024-07-09 18:59:02,339 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=52.9 pTM=0.513 ipTM=0.149 tol=4.2
2024-07-09 18:59:11,427 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.7 pTM=0.511 ipTM=0.142 tol=3.19
2024-07-09 18:59:20,519 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=53 pTM=0.51 ipTM=0.139 tol=3.23
2024-07-09 18:59:29,621 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=53 pTM=0.511 ipTM=0.14 tol=1.93
2024-07-09 18:59:38,720 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=52.8 pTM=0.508 ipTM=0.137 tol=2.09
2024-07-09 18:59:47,812 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=53.1 pTM=0.51 ipTM=0.138 tol=2.89
2024-07-09 18:59:56,919 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=52.6 pTM=0.508 ipTM=0.136 tol=3.14
2024-07-09 19:00:06,012 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=52.9 pTM=0.511 ipTM=0.138 tol=5.93
2024-07-09 19:00:15,116 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=52.8 pTM=0.51 ipTM=0.14 tol=2.27
2024-07-09 19:00:24,220 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=52.9 pTM=0.509 ipTM=0.141 tol=4.64
2024-07-09 19:00:33,321 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=52.8 pTM=0.509 ipTM=0.139 tol=3.18
2024-07-09 19:00:42,407 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=52.7 pTM=0.509 ipTM=0.139 tol=2.9
2024-07-09 19:00:51,505 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=52.6 pTM=0.508 ipTM=0.14 tol=2
2024-07-09 19:01:00,610 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=52.7 pTM=0.509 ipTM=0.139 tol=3.25
2024-07-09 19:01:09,707 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=52.9 pTM=0.508 ipTM=0.143 tol=2.89
2024-07-09 19:01:18,805 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=53.2 pTM=0.509 ipTM=0.137 tol=2.07
2024-07-09 19:01:27,897 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=52.5 pTM=0.508 ipTM=0.137 tol=2.47
2024-07-09 19:01:36,996 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=53 pTM=0.509 ipTM=0.139 tol=6.39
2024-07-09 19:01:46,104 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=52.8 pTM=0.506 ipTM=0.138 tol=5.3
2024-07-09 19:01:55,204 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=53.1 pTM=0.508 ipTM=0.136 tol=4.71
2024-07-09 19:02:04,313 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=52.9 pTM=0.511 ipTM=0.142 tol=2.41
2024-07-09 19:02:13,446 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=53.1 pTM=0.509 ipTM=0.138 tol=7.51
2024-07-09 19:02:22,546 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=52.5 pTM=0.508 ipTM=0.139 tol=7.65
2024-07-09 19:02:31,653 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=53 pTM=0.509 ipTM=0.139 tol=1.87
2024-07-09 19:02:40,743 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=52.8 pTM=0.509 ipTM=0.139 tol=2.27
2024-07-09 19:02:49,840 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=53 pTM=0.507 ipTM=0.136 tol=5.5
2024-07-09 19:02:58,955 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=53.1 pTM=0.508 ipTM=0.133 tol=2.78
2024-07-09 19:02:58,956 alphafold2_multimer_v3_model_4_seed_000 took 282.2s (30 recycles)
2024-07-09 19:03:08,315 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=50.9 pTM=0.501 ipTM=0.189
2024-07-09 19:03:17,385 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=51.7 pTM=0.504 ipTM=0.149 tol=13.3
2024-07-09 19:03:26,472 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=51.8 pTM=0.504 ipTM=0.152 tol=7.66
2024-07-09 19:03:35,548 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=51.9 pTM=0.505 ipTM=0.146 tol=5.36
2024-07-09 19:03:44,611 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=52.1 pTM=0.504 ipTM=0.147 tol=2.51
2024-07-09 19:03:53,670 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=52.1 pTM=0.504 ipTM=0.15 tol=2.02
2024-07-09 19:04:02,742 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=52.3 pTM=0.504 ipTM=0.143 tol=2.55
2024-07-09 19:04:11,794 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=52.3 pTM=0.505 ipTM=0.152 tol=4.62
2024-07-09 19:04:20,843 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=52.4 pTM=0.503 ipTM=0.147 tol=4.14
2024-07-09 19:04:29,915 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=52.4 pTM=0.504 ipTM=0.15 tol=4.15
2024-07-09 19:04:38,963 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=52.6 pTM=0.505 ipTM=0.15 tol=2.93
2024-07-09 19:04:48,043 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=52.8 pTM=0.506 ipTM=0.149 tol=3.23
2024-07-09 19:04:57,119 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=52.6 pTM=0.504 ipTM=0.149 tol=3.54
2024-07-09 19:05:06,183 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=52.8 pTM=0.505 ipTM=0.147 tol=3.88
2024-07-09 19:05:15,224 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=52.6 pTM=0.507 ipTM=0.158 tol=3.75
2024-07-09 19:05:24,271 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=52.5 pTM=0.506 ipTM=0.156 tol=2.59
2024-07-09 19:05:33,317 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=52.4 pTM=0.507 ipTM=0.153 tol=6.57
2024-07-09 19:05:42,364 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=52.8 pTM=0.509 ipTM=0.159 tol=4.7
2024-07-09 19:05:51,430 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=52.5 pTM=0.508 ipTM=0.159 tol=2.78
2024-07-09 19:06:00,498 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=52.6 pTM=0.508 ipTM=0.152 tol=5.05
2024-07-09 19:06:09,553 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=53.4 pTM=0.51 ipTM=0.159 tol=2.79
2024-07-09 19:06:18,612 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=52.7 pTM=0.507 ipTM=0.153 tol=3.49
2024-07-09 19:06:27,658 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=52.7 pTM=0.508 ipTM=0.158 tol=2.2
2024-07-09 19:06:36,705 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=52.9 pTM=0.506 ipTM=0.15 tol=2.1
2024-07-09 19:06:45,767 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=52.8 pTM=0.508 ipTM=0.157 tol=2.25
2024-07-09 19:06:54,827 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=52.8 pTM=0.506 ipTM=0.152 tol=2.57
2024-07-09 19:07:03,886 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=52.5 pTM=0.507 ipTM=0.158 tol=2.3
2024-07-09 19:07:12,935 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=52.5 pTM=0.506 ipTM=0.157 tol=2.22
2024-07-09 19:07:21,975 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=52.6 pTM=0.51 ipTM=0.164 tol=1.19
2024-07-09 19:07:31,014 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=52.6 pTM=0.506 ipTM=0.154 tol=1.21
2024-07-09 19:07:40,081 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=52.6 pTM=0.505 ipTM=0.148 tol=3.72
2024-07-09 19:07:40,081 alphafold2_multimer_v3_model_5_seed_000 took 280.8s (30 recycles)
2024-07-09 19:07:40,369 reranking models by 'multimer' metric
2024-07-09 19:07:43,684 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 19:08:33,151 Relaxation took 52.8s
2024-07-09 19:08:33,152 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=54.2 pTM=0.525 ipTM=0.207
2024-07-09 19:09:17,845 Relaxation took 44.7s
2024-07-09 19:09:17,845 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=53.9 pTM=0.51 ipTM=0.161
2024-07-09 19:09:44,812 Relaxation took 27.0s
2024-07-09 19:09:44,812 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=52.6 pTM=0.505 ipTM=0.148
2024-07-09 19:10:39,831 Relaxation took 55.0s
2024-07-09 19:10:39,831 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=55 pTM=0.508 ipTM=0.146
2024-07-09 19:11:41,494 Relaxation took 61.7s
2024-07-09 19:11:41,495 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=53.1 pTM=0.508 ipTM=0.133
2024-07-09 19:11:42,708 Done