2024-07-09 20:33:05,645 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 20:33:05,967 Running on GPU
2024-07-09 20:33:09,866 Found 6 citations for tools or databases
2024-07-09 20:33:09,866 Query 1/1: DQA2_IL23A (length 444)
2024-07-09 20:33:10,536 Sleeping for 7s. Reason: PENDING
2024-07-09 20:33:17,973 Sleeping for 9s. Reason: RUNNING
2024-07-09 20:33:27,397 Sleeping for 6s. Reason: RUNNING
2024-07-09 20:33:34,291 Sleeping for 9s. Reason: RUNNING
2024-07-09 20:33:43,710 Sleeping for 6s. Reason: RUNNING
2024-07-09 20:33:51,644 Sleeping for 9s. Reason: PENDING
2024-07-09 20:34:01,104 Sleeping for 6s. Reason: RUNNING
2024-07-09 20:34:07,551 Sleeping for 10s. Reason: RUNNING
2024-07-09 20:34:19,839 Setting max_seq=508, max_extra_seq=1770
2024-07-09 20:36:40,936 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=64.1 pTM=0.427 ipTM=0.147
2024-07-09 20:36:45,510 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.4 pTM=0.461 ipTM=0.223 tol=12.1
2024-07-09 20:36:50,076 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.2 pTM=0.467 ipTM=0.182 tol=6.86
2024-07-09 20:36:54,643 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.2 pTM=0.473 ipTM=0.198 tol=1.9
2024-07-09 20:36:59,202 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.1 pTM=0.479 ipTM=0.211 tol=1.6
2024-07-09 20:37:03,761 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.6 pTM=0.48 ipTM=0.214 tol=0.743
2024-07-09 20:37:08,321 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=69.9 pTM=0.486 ipTM=0.224 tol=0.454
2024-07-09 20:37:08,321 alphafold2_multimer_v3_model_1_seed_000 took 163.3s (6 recycles)
2024-07-09 20:37:13,033 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=69.4 pTM=0.475 ipTM=0.259
2024-07-09 20:37:17,613 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.3 pTM=0.514 ipTM=0.283 tol=5
2024-07-09 20:37:22,184 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.6 pTM=0.495 ipTM=0.238 tol=9.69
2024-07-09 20:37:26,757 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.9 pTM=0.494 ipTM=0.241 tol=1.44
2024-07-09 20:37:31,328 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=72.1 pTM=0.499 ipTM=0.258 tol=2.16
2024-07-09 20:37:35,899 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.8 pTM=0.512 ipTM=0.286 tol=0.64
2024-07-09 20:37:40,474 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.2 pTM=0.523 ipTM=0.312 tol=2.07
2024-07-09 20:37:45,048 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.2 pTM=0.555 ipTM=0.39 tol=3.46
2024-07-09 20:37:49,619 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.5 pTM=0.59 ipTM=0.471 tol=0.774
2024-07-09 20:37:54,197 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=76.7 pTM=0.628 ipTM=0.566 tol=1.18
2024-07-09 20:37:58,777 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=77.2 pTM=0.646 ipTM=0.617 tol=1.07
2024-07-09 20:38:03,350 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=77.5 pTM=0.652 ipTM=0.628 tol=1.3
2024-07-09 20:38:07,930 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=77.6 pTM=0.654 ipTM=0.628 tol=0.736
2024-07-09 20:38:12,500 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=77.5 pTM=0.653 ipTM=0.635 tol=0.188
2024-07-09 20:38:12,500 alphafold2_multimer_v3_model_2_seed_000 took 64.0s (13 recycles)
2024-07-09 20:38:17,215 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.8 pTM=0.427 ipTM=0.126
2024-07-09 20:38:21,785 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.9 pTM=0.437 ipTM=0.135 tol=4.58
2024-07-09 20:38:26,344 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=67.7 pTM=0.459 ipTM=0.169 tol=4.79
2024-07-09 20:38:30,907 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67.6 pTM=0.463 ipTM=0.178 tol=2.96
2024-07-09 20:38:35,475 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.1 pTM=0.466 ipTM=0.186 tol=1.15
2024-07-09 20:38:40,038 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=68.4 pTM=0.469 ipTM=0.19 tol=1.38
2024-07-09 20:38:44,607 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=68.6 pTM=0.471 ipTM=0.192 tol=1.13
2024-07-09 20:38:49,175 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=68.5 pTM=0.471 ipTM=0.187 tol=1.42
2024-07-09 20:38:53,747 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=68.3 pTM=0.474 ipTM=0.191 tol=1.68
2024-07-09 20:38:58,309 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=68 pTM=0.471 ipTM=0.184 tol=0.757
2024-07-09 20:39:02,879 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=67.6 pTM=0.471 ipTM=0.186 tol=1.19
2024-07-09 20:39:07,446 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68.1 pTM=0.472 ipTM=0.188 tol=1.28
2024-07-09 20:39:12,015 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=68.1 pTM=0.472 ipTM=0.185 tol=0.514
2024-07-09 20:39:16,583 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=68.1 pTM=0.473 ipTM=0.188 tol=0.844
2024-07-09 20:39:21,149 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=67.8 pTM=0.474 ipTM=0.193 tol=1.08
2024-07-09 20:39:25,715 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.1 pTM=0.473 ipTM=0.19 tol=1.07
2024-07-09 20:39:30,283 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=68 pTM=0.474 ipTM=0.192 tol=0.986
2024-07-09 20:39:34,850 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=68 pTM=0.473 ipTM=0.194 tol=1.03
2024-07-09 20:39:39,418 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=68.4 pTM=0.477 ipTM=0.197 tol=0.556
2024-07-09 20:39:43,985 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=68.3 pTM=0.473 ipTM=0.193 tol=0.901
2024-07-09 20:39:48,552 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=67.9 pTM=0.472 ipTM=0.189 tol=0.908
2024-07-09 20:39:53,119 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=68.1 pTM=0.472 ipTM=0.188 tol=0.981
2024-07-09 20:39:57,688 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=68.2 pTM=0.476 ipTM=0.197 tol=1.12
2024-07-09 20:40:02,256 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=68.1 pTM=0.474 ipTM=0.189 tol=1.09
2024-07-09 20:40:06,822 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=67.8 pTM=0.474 ipTM=0.191 tol=1.24
2024-07-09 20:40:11,391 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67.8 pTM=0.474 ipTM=0.187 tol=0.932
2024-07-09 20:40:15,959 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.9 pTM=0.476 ipTM=0.191 tol=0.731
2024-07-09 20:40:20,528 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=67.6 pTM=0.473 ipTM=0.185 tol=0.95
2024-07-09 20:40:25,095 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=67.8 pTM=0.475 ipTM=0.195 tol=1.44
2024-07-09 20:40:29,664 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67.9 pTM=0.476 ipTM=0.191 tol=1.08
2024-07-09 20:40:34,230 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=68.5 pTM=0.477 ipTM=0.198 tol=1.41
2024-07-09 20:40:34,231 alphafold2_multimer_v3_model_3_seed_000 took 141.6s (30 recycles)
2024-07-09 20:40:38,935 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=61.6 pTM=0.406 ipTM=0.165
2024-07-09 20:40:43,509 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.2 pTM=0.429 ipTM=0.159 tol=7.72
2024-07-09 20:40:48,079 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.4 pTM=0.446 ipTM=0.254 tol=3.51
2024-07-09 20:40:52,640 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66.5 pTM=0.442 ipTM=0.157 tol=2.79
2024-07-09 20:40:57,207 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=66.9 pTM=0.444 ipTM=0.163 tol=2.11
2024-07-09 20:41:01,771 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=66.2 pTM=0.442 ipTM=0.159 tol=2.27
2024-07-09 20:41:06,334 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.8 pTM=0.442 ipTM=0.157 tol=3.38
2024-07-09 20:41:10,896 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=66.1 pTM=0.447 ipTM=0.166 tol=2.81
2024-07-09 20:41:15,462 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=66.5 pTM=0.44 ipTM=0.15 tol=2.05
2024-07-09 20:41:20,022 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=66.2 pTM=0.444 ipTM=0.163 tol=2
2024-07-09 20:41:24,584 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=66.2 pTM=0.438 ipTM=0.148 tol=2.15
2024-07-09 20:41:29,145 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=65.7 pTM=0.447 ipTM=0.168 tol=1.75
2024-07-09 20:41:33,708 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=65.7 pTM=0.437 ipTM=0.154 tol=1.99
2024-07-09 20:41:38,268 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=65.6 pTM=0.445 ipTM=0.169 tol=1.43
2024-07-09 20:41:42,830 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=65.5 pTM=0.44 ipTM=0.157 tol=1.96
2024-07-09 20:41:47,392 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=65.5 pTM=0.445 ipTM=0.17 tol=2.29
2024-07-09 20:41:51,954 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=65.1 pTM=0.44 ipTM=0.158 tol=1.37
2024-07-09 20:41:56,515 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=65.1 pTM=0.45 ipTM=0.181 tol=2.49
2024-07-09 20:42:01,080 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=65.4 pTM=0.441 ipTM=0.154 tol=1.81
2024-07-09 20:42:05,640 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.2 pTM=0.447 ipTM=0.173 tol=1.73
2024-07-09 20:42:10,203 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=65.2 pTM=0.438 ipTM=0.155 tol=2.37
2024-07-09 20:42:14,767 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=65.6 pTM=0.444 ipTM=0.165 tol=2.05
2024-07-09 20:42:19,335 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=65.7 pTM=0.442 ipTM=0.157 tol=1.47
2024-07-09 20:42:23,896 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=65.3 pTM=0.446 ipTM=0.167 tol=1.58
2024-07-09 20:42:28,461 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=65.2 pTM=0.438 ipTM=0.153 tol=1.86
2024-07-09 20:42:33,025 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=64.7 pTM=0.444 ipTM=0.168 tol=1.71
2024-07-09 20:42:37,584 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=65 pTM=0.438 ipTM=0.158 tol=2.28
2024-07-09 20:42:42,145 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=65 pTM=0.446 ipTM=0.174 tol=2.19
2024-07-09 20:42:46,711 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65.2 pTM=0.437 ipTM=0.151 tol=2.15
2024-07-09 20:42:51,273 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=64.2 pTM=0.447 ipTM=0.179 tol=3.15
2024-07-09 20:42:55,840 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=65.9 pTM=0.441 ipTM=0.152 tol=3.37
2024-07-09 20:42:55,841 alphafold2_multimer_v3_model_4_seed_000 took 141.5s (30 recycles)
2024-07-09 20:43:00,555 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=64.7 pTM=0.491 ipTM=0.355
2024-07-09 20:43:05,135 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=64.8 pTM=0.438 ipTM=0.154 tol=8.91
2024-07-09 20:43:09,710 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=64.9 pTM=0.467 ipTM=0.208 tol=5.92
2024-07-09 20:43:14,287 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=65.1 pTM=0.449 ipTM=0.169 tol=3.59
2024-07-09 20:43:18,868 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65.2 pTM=0.462 ipTM=0.196 tol=2.95
2024-07-09 20:43:23,445 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=65.2 pTM=0.449 ipTM=0.174 tol=3
2024-07-09 20:43:28,017 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=65.6 pTM=0.464 ipTM=0.199 tol=1.97
2024-07-09 20:43:32,590 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=65.2 pTM=0.448 ipTM=0.167 tol=3.27
2024-07-09 20:43:37,165 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=64.6 pTM=0.46 ipTM=0.183 tol=2.25
2024-07-09 20:43:41,741 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=64.2 pTM=0.451 ipTM=0.166 tol=2.07
2024-07-09 20:43:46,319 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=64.3 pTM=0.466 ipTM=0.194 tol=3.21
2024-07-09 20:43:50,894 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=64.2 pTM=0.454 ipTM=0.177 tol=3.19
2024-07-09 20:43:55,465 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=64.7 pTM=0.465 ipTM=0.201 tol=2.86
2024-07-09 20:44:00,034 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=64 pTM=0.448 ipTM=0.171 tol=3.12
2024-07-09 20:44:04,608 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=64.4 pTM=0.467 ipTM=0.207 tol=3.06
2024-07-09 20:44:09,184 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=64.6 pTM=0.455 ipTM=0.18 tol=3.21
2024-07-09 20:44:13,757 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=65 pTM=0.47 ipTM=0.213 tol=3.09
2024-07-09 20:44:18,330 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=64.8 pTM=0.453 ipTM=0.182 tol=2.88
2024-07-09 20:44:22,901 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=65.6 pTM=0.472 ipTM=0.214 tol=2.64
2024-07-09 20:44:27,474 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=64.8 pTM=0.451 ipTM=0.178 tol=2.41
2024-07-09 20:44:32,045 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=64.6 pTM=0.461 ipTM=0.197 tol=2.12
2024-07-09 20:44:36,621 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=64.8 pTM=0.454 ipTM=0.178 tol=2.45
2024-07-09 20:44:41,192 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=65.4 pTM=0.473 ipTM=0.214 tol=2.77
2024-07-09 20:44:45,768 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=64.8 pTM=0.452 ipTM=0.179 tol=2.9
2024-07-09 20:44:50,334 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=64.7 pTM=0.467 ipTM=0.206 tol=3.01
2024-07-09 20:44:54,910 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=64.1 pTM=0.45 ipTM=0.174 tol=3.53
2024-07-09 20:44:59,481 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=64.4 pTM=0.465 ipTM=0.202 tol=2.79
2024-07-09 20:45:04,055 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=64 pTM=0.452 ipTM=0.172 tol=3.62
2024-07-09 20:45:08,631 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=64.7 pTM=0.468 ipTM=0.204 tol=4.12
2024-07-09 20:45:13,203 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=63.9 pTM=0.451 ipTM=0.176 tol=3.49
2024-07-09 20:45:17,776 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.2 pTM=0.47 ipTM=0.208 tol=3.32
2024-07-09 20:45:17,776 alphafold2_multimer_v3_model_5_seed_000 took 141.8s (30 recycles)
2024-07-09 20:45:17,914 reranking models by 'multimer' metric
2024-07-09 20:45:18,601 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 20:45:32,762 Relaxation took 14.8s
2024-07-09 20:45:32,762 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=77.5 pTM=0.653 ipTM=0.635
2024-07-09 20:45:57,010 Relaxation took 24.2s
2024-07-09 20:45:57,011 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=69.9 pTM=0.486 ipTM=0.224
2024-07-09 20:46:21,354 Relaxation took 24.3s
2024-07-09 20:46:21,354 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.2 pTM=0.47 ipTM=0.208
2024-07-09 20:46:44,855 Relaxation took 23.5s
2024-07-09 20:46:44,855 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=68.5 pTM=0.477 ipTM=0.198
2024-07-09 20:47:01,964 Relaxation took 17.1s
2024-07-09 20:47:01,965 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=65.9 pTM=0.441 ipTM=0.152
2024-07-09 20:47:02,929 Done