2024-07-09 22:33:08,424 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 22:33:08,743 Running on GPU
2024-07-09 22:33:12,571 Found 6 citations for tools or databases
2024-07-09 22:33:12,571 Query 1/1: EMAL5_SVIP (length 2046)
2024-07-09 22:33:13,031 Sleeping for 6s. Reason: PENDING
2024-07-09 22:33:19,456 Sleeping for 8s. Reason: RUNNING
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2024-07-09 22:37:31,563 Sleeping for 10s. Reason: PENDING
2024-07-09 22:37:41,985 Sleeping for 7s. Reason: RUNNING
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2024-07-09 22:39:40,284 Sleeping for 10s. Reason: RUNNING
2024-07-09 22:39:51,728 Sleeping for 8s. Reason: RUNNING
2024-07-09 22:40:00,721 Sleeping for 8s. Reason: RUNNING
2024-07-09 22:40:09,139 Sleeping for 9s. Reason: RUNNING
2024-07-09 22:40:18,579 Sleeping for 6s. Reason: RUNNING
2024-07-09 22:40:28,630 Setting max_seq=508, max_extra_seq=2048
2024-07-09 22:45:56,268 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=86.2 pTM=0.842 ipTM=0.338
2024-07-09 22:48:42,538 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=87.8 pTM=0.848 ipTM=0.261 tol=4.91
2024-07-09 22:51:28,773 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=87.8 pTM=0.844 ipTM=0.262 tol=2.56
2024-07-09 22:54:14,941 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=87.6 pTM=0.84 ipTM=0.278 tol=0.807
2024-07-09 22:57:00,957 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=87.2 pTM=0.821 ipTM=0.286 tol=1.17
2024-07-09 22:59:47,128 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=88 pTM=0.836 ipTM=0.406 tol=2.35
2024-07-09 23:02:33,137 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=87.6 pTM=0.82 ipTM=0.397 tol=0.77
2024-07-09 23:05:19,247 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=87.6 pTM=0.813 ipTM=0.366 tol=0.524
2024-07-09 23:08:05,327 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=87.6 pTM=0.815 ipTM=0.383 tol=0.406
2024-07-09 23:08:05,330 alphafold2_multimer_v3_model_1_seed_000 took 1651.4s (8 recycles)
2024-07-09 23:10:54,073 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=86.1 pTM=0.848 ipTM=0.315
2024-07-09 23:13:40,496 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=88 pTM=0.865 ipTM=0.286 tol=1.87
2024-07-09 23:16:26,836 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=87.8 pTM=0.86 ipTM=0.288 tol=0.891
2024-07-09 23:19:13,121 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=87.8 pTM=0.855 ipTM=0.286 tol=1.15
2024-07-09 23:21:59,331 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=87.7 pTM=0.849 ipTM=0.286 tol=1.12
2024-07-09 23:24:45,635 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=87.9 pTM=0.85 ipTM=0.291 tol=0.516
2024-07-09 23:27:31,790 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=87.6 pTM=0.841 ipTM=0.298 tol=0.555
2024-07-09 23:30:18,041 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=88 pTM=0.847 ipTM=0.295 tol=0.632
2024-07-09 23:33:04,258 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=87.9 pTM=0.844 ipTM=0.297 tol=0.52
2024-07-09 23:35:50,394 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=87.7 pTM=0.839 ipTM=0.297 tol=0.314
2024-07-09 23:35:50,397 alphafold2_multimer_v3_model_2_seed_000 took 1662.7s (9 recycles)
2024-07-09 23:38:39,237 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.1 pTM=0.852 ipTM=0.285
2024-07-09 23:41:25,479 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=87.9 pTM=0.846 ipTM=0.327 tol=4.48
2024-07-09 23:44:11,722 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=88.1 pTM=0.848 ipTM=0.369 tol=2.96
2024-07-09 23:46:57,815 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=88.1 pTM=0.843 ipTM=0.418 tol=2.29
2024-07-09 23:49:43,831 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.7 pTM=0.831 ipTM=0.39 tol=1.36
2024-07-09 23:52:29,891 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=87.9 pTM=0.825 ipTM=0.308 tol=4.21
2024-07-09 23:55:15,899 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=87.7 pTM=0.825 ipTM=0.327 tol=3.05
2024-07-09 23:58:01,837 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=87.4 pTM=0.813 ipTM=0.366 tol=1.31
2024-07-10 00:00:47,746 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=87.3 pTM=0.813 ipTM=0.365 tol=0.75
2024-07-10 00:03:33,743 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=87.6 pTM=0.818 ipTM=0.362 tol=0.611
2024-07-10 00:06:19,797 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=87.9 pTM=0.823 ipTM=0.378 tol=0.45
2024-07-10 00:06:19,800 alphafold2_multimer_v3_model_3_seed_000 took 1827.0s (10 recycles)
2024-07-10 00:09:08,611 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=86.3 pTM=0.858 ipTM=0.271
2024-07-10 00:11:54,949 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=87.6 pTM=0.865 ipTM=0.342 tol=4.58
2024-07-10 00:14:41,178 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=87.9 pTM=0.861 ipTM=0.358 tol=2.05
2024-07-10 00:17:27,359 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=88 pTM=0.863 ipTM=0.386 tol=0.916
2024-07-10 00:20:13,480 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=87.8 pTM=0.855 ipTM=0.376 tol=0.401
2024-07-10 00:20:13,482 alphafold2_multimer_v3_model_4_seed_000 took 831.3s (4 recycles)
2024-07-10 00:23:02,218 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=86.2 pTM=0.85 ipTM=0.274
2024-07-10 00:25:48,537 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=87.5 pTM=0.848 ipTM=0.326 tol=3.04
2024-07-10 00:28:34,815 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=88 pTM=0.847 ipTM=0.408 tol=1.61
2024-07-10 00:31:20,965 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=88.1 pTM=0.84 ipTM=0.464 tol=0.95
2024-07-10 00:34:07,137 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=87.9 pTM=0.838 ipTM=0.344 tol=1.58
2024-07-10 00:36:53,404 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=88.1 pTM=0.841 ipTM=0.397 tol=0.71
2024-07-10 00:39:39,537 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=88 pTM=0.836 ipTM=0.419 tol=0.96
2024-07-10 00:42:25,725 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=88.3 pTM=0.838 ipTM=0.42 tol=0.364
2024-07-10 00:42:25,727 alphafold2_multimer_v3_model_5_seed_000 took 1329.8s (7 recycles)
2024-07-10 00:42:28,140 reranking models by 'multimer' metric
2024-07-10 00:42:32,748 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 00:46:59,293 Relaxation took 271.2s
2024-07-10 00:46:59,294 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=88.3 pTM=0.838 ipTM=0.42
2024-07-10 00:52:36,107 Relaxation took 336.8s
2024-07-10 00:52:36,108 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=87.8 pTM=0.855 ipTM=0.376
2024-07-10 00:57:13,083 Relaxation took 277.0s
2024-07-10 00:57:13,083 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.6 pTM=0.815 ipTM=0.383
2024-07-10 01:04:21,816 Relaxation took 428.7s
2024-07-10 01:04:21,816 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=87.9 pTM=0.823 ipTM=0.378
2024-07-10 01:09:13,890 Relaxation took 292.1s
2024-07-10 01:09:13,890 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.7 pTM=0.839 ipTM=0.297
2024-07-10 01:09:18,884 Done