2024-07-09 22:41:24,856 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-09 22:41:25,161 Running on GPU
2024-07-09 22:41:28,909 Found 6 citations for tools or databases
2024-07-09 22:41:28,909 Query 1/1: EMARD_GLUCM (length 1294)
2024-07-09 22:41:29,362 Sleeping for 7s. Reason: PENDING
2024-07-09 22:41:36,780 Sleeping for 8s. Reason: RUNNING
2024-07-09 22:41:45,696 Sleeping for 6s. Reason: RUNNING
2024-07-09 22:41:52,105 Sleeping for 5s. Reason: RUNNING
2024-07-09 22:41:57,542 Sleeping for 6s. Reason: RUNNING
2024-07-09 22:42:04,460 Sleeping for 7s. Reason: RUNNING
2024-07-09 22:42:13,061 Sleeping for 7s. Reason: RUNNING
2024-07-09 22:42:20,488 Sleeping for 8s. Reason: RUNNING
2024-07-09 22:42:29,067 Sleeping for 9s. Reason: RUNNING
2024-07-09 22:42:38,496 Sleeping for 8s. Reason: RUNNING
2024-07-09 22:42:46,928 Sleeping for 7s. Reason: RUNNING
2024-07-09 22:42:56,348 Sleeping for 9s. Reason: PENDING
2024-07-09 22:43:05,774 Sleeping for 7s. Reason: RUNNING
2024-07-09 22:43:13,205 Sleeping for 7s. Reason: RUNNING
2024-07-09 22:43:20,615 Sleeping for 5s. Reason: RUNNING
2024-07-09 22:43:28,854 Setting max_seq=508, max_extra_seq=2048
2024-07-09 22:46:39,612 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82.1 pTM=0.525 ipTM=0.14
2024-07-09 22:47:22,237 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=82.5 pTM=0.529 ipTM=0.146 tol=6.42
2024-07-09 22:48:04,934 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.8 pTM=0.534 ipTM=0.146 tol=7.61
2024-07-09 22:48:47,702 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.6 pTM=0.535 ipTM=0.15 tol=4.65
2024-07-09 22:49:30,448 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=84 pTM=0.539 ipTM=0.157 tol=4.74
2024-07-09 22:50:13,198 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=84.1 pTM=0.538 ipTM=0.161 tol=2.56
2024-07-09 22:50:55,955 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84.3 pTM=0.542 ipTM=0.166 tol=3.58
2024-07-09 22:51:38,687 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=84.3 pTM=0.541 ipTM=0.169 tol=6
2024-07-09 22:52:21,432 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=84.6 pTM=0.545 ipTM=0.179 tol=5.44
2024-07-09 22:53:04,183 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=84.6 pTM=0.545 ipTM=0.183 tol=2.55
2024-07-09 22:53:46,905 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=84.8 pTM=0.545 ipTM=0.182 tol=3.07
2024-07-09 22:54:29,612 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=84.6 pTM=0.547 ipTM=0.186 tol=1.23
2024-07-09 22:55:12,306 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=84.5 pTM=0.547 ipTM=0.191 tol=0.737
2024-07-09 22:55:55,016 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=84.6 pTM=0.549 ipTM=0.188 tol=0.787
2024-07-09 22:56:37,703 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=84.5 pTM=0.547 ipTM=0.189 tol=0.421
2024-07-09 22:56:37,704 alphafold2_multimer_v3_model_1_seed_000 took 784.0s (14 recycles)
2024-07-09 22:57:21,573 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.1 pTM=0.537 ipTM=0.149
2024-07-09 22:58:04,378 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.6 pTM=0.542 ipTM=0.164 tol=7.36
2024-07-09 22:58:47,214 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=83.9 pTM=0.538 ipTM=0.169 tol=4.96
2024-07-09 22:59:30,055 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.2 pTM=0.541 ipTM=0.172 tol=3.08
2024-07-09 23:00:12,882 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.8 pTM=0.544 ipTM=0.174 tol=2.63
2024-07-09 23:00:55,683 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.7 pTM=0.542 ipTM=0.173 tol=1.13
2024-07-09 23:01:38,515 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=85 pTM=0.543 ipTM=0.174 tol=2
2024-07-09 23:02:21,319 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.9 pTM=0.544 ipTM=0.177 tol=2.01
2024-07-09 23:03:04,129 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=85.2 pTM=0.546 ipTM=0.178 tol=1.83
2024-07-09 23:03:46,974 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=85.2 pTM=0.547 ipTM=0.178 tol=1.41
2024-07-09 23:04:29,788 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=85.1 pTM=0.544 ipTM=0.176 tol=0.968
2024-07-09 23:05:12,602 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=85.1 pTM=0.545 ipTM=0.178 tol=0.449
2024-07-09 23:05:12,603 alphafold2_multimer_v3_model_2_seed_000 took 513.9s (11 recycles)
2024-07-09 23:05:56,452 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=83.4 pTM=0.533 ipTM=0.146
2024-07-09 23:06:39,231 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.4 pTM=0.551 ipTM=0.181 tol=12.6
2024-07-09 23:07:22,012 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.1 pTM=0.544 ipTM=0.169 tol=2.34
2024-07-09 23:08:04,780 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.3 pTM=0.546 ipTM=0.173 tol=1.18
2024-07-09 23:08:47,567 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84.5 pTM=0.547 ipTM=0.173 tol=1.47
2024-07-09 23:09:30,327 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.4 pTM=0.543 ipTM=0.167 tol=1.99
2024-07-09 23:10:13,109 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=84.5 pTM=0.542 ipTM=0.166 tol=0.963
2024-07-09 23:10:55,890 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=84.6 pTM=0.542 ipTM=0.164 tol=1.38
2024-07-09 23:11:38,648 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.7 pTM=0.543 ipTM=0.169 tol=1.1
2024-07-09 23:12:21,432 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=84.6 pTM=0.541 ipTM=0.163 tol=1.25
2024-07-09 23:13:04,195 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=84.6 pTM=0.541 ipTM=0.163 tol=0.863
2024-07-09 23:13:46,993 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=84.4 pTM=0.54 ipTM=0.162 tol=0.595
2024-07-09 23:14:29,800 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=84.4 pTM=0.54 ipTM=0.162 tol=0.52
2024-07-09 23:15:12,552 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=84.4 pTM=0.54 ipTM=0.162 tol=1
2024-07-09 23:15:55,292 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=84.3 pTM=0.537 ipTM=0.161 tol=1.17
2024-07-09 23:16:38,095 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=84.4 pTM=0.538 ipTM=0.161 tol=0.462
2024-07-09 23:16:38,096 alphafold2_multimer_v3_model_3_seed_000 took 684.5s (15 recycles)
2024-07-09 23:17:21,983 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=83.3 pTM=0.542 ipTM=0.152
2024-07-09 23:18:04,882 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=84 pTM=0.543 ipTM=0.155 tol=15.2
2024-07-09 23:18:47,746 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84.6 pTM=0.543 ipTM=0.155 tol=4.5
2024-07-09 23:19:30,597 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85 pTM=0.551 ipTM=0.17 tol=2.98
2024-07-09 23:20:13,396 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.9 pTM=0.554 ipTM=0.175 tol=3
2024-07-09 23:20:56,211 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.9 pTM=0.554 ipTM=0.18 tol=3.58
2024-07-09 23:21:39,033 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=85.1 pTM=0.556 ipTM=0.184 tol=1.33
2024-07-09 23:22:21,836 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=85.1 pTM=0.556 ipTM=0.182 tol=2.28
2024-07-09 23:23:04,625 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=85.2 pTM=0.555 ipTM=0.18 tol=1.33
2024-07-09 23:23:47,431 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=85.1 pTM=0.554 ipTM=0.176 tol=1.02
2024-07-09 23:24:30,198 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=85.2 pTM=0.553 ipTM=0.176 tol=0.684
2024-07-09 23:25:12,978 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=85 pTM=0.554 ipTM=0.179 tol=0.793
2024-07-09 23:25:55,746 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=85 pTM=0.554 ipTM=0.178 tol=0.528
2024-07-09 23:26:38,518 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=85.1 pTM=0.556 ipTM=0.18 tol=0.544
2024-07-09 23:27:21,287 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=85 pTM=0.553 ipTM=0.178 tol=0.757
2024-07-09 23:28:04,055 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=85 pTM=0.555 ipTM=0.179 tol=1.19
2024-07-09 23:28:46,834 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=84.9 pTM=0.553 ipTM=0.178 tol=0.723
2024-07-09 23:29:29,582 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=84.9 pTM=0.553 ipTM=0.177 tol=1.15
2024-07-09 23:30:12,394 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=85.1 pTM=0.554 ipTM=0.178 tol=1.21
2024-07-09 23:30:55,164 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=85 pTM=0.552 ipTM=0.173 tol=0.715
2024-07-09 23:31:37,978 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=85.1 pTM=0.552 ipTM=0.172 tol=0.484
2024-07-09 23:31:37,979 alphafold2_multimer_v3_model_4_seed_000 took 898.9s (20 recycles)
2024-07-09 23:32:21,767 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=81.7 pTM=0.538 ipTM=0.159
2024-07-09 23:33:04,590 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=84.2 pTM=0.555 ipTM=0.17 tol=20.9
2024-07-09 23:33:47,337 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=84.2 pTM=0.559 ipTM=0.185 tol=4.05
2024-07-09 23:34:30,127 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.4 pTM=0.563 ipTM=0.192 tol=3.77
2024-07-09 23:35:12,938 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.6 pTM=0.561 ipTM=0.188 tol=2.63
2024-07-09 23:35:55,729 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=84.6 pTM=0.56 ipTM=0.188 tol=2.32
2024-07-09 23:36:38,512 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=84.7 pTM=0.561 ipTM=0.189 tol=2.62
2024-07-09 23:37:21,304 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=84.8 pTM=0.56 ipTM=0.187 tol=0.963
2024-07-09 23:38:04,113 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=84.8 pTM=0.558 ipTM=0.184 tol=1.26
2024-07-09 23:38:46,917 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=84.8 pTM=0.557 ipTM=0.182 tol=0.89
2024-07-09 23:39:29,720 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=84.8 pTM=0.556 ipTM=0.181 tol=0.794
2024-07-09 23:40:12,490 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=84.6 pTM=0.555 ipTM=0.182 tol=1.36
2024-07-09 23:40:55,265 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=84.6 pTM=0.555 ipTM=0.181 tol=1.44
2024-07-09 23:41:38,055 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=84.8 pTM=0.556 ipTM=0.179 tol=1.57
2024-07-09 23:42:20,817 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=84.5 pTM=0.556 ipTM=0.18 tol=1.64
2024-07-09 23:43:03,592 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=84.7 pTM=0.557 ipTM=0.179 tol=0.936
2024-07-09 23:43:46,406 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=84.6 pTM=0.557 ipTM=0.183 tol=1.08
2024-07-09 23:44:29,158 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=84.6 pTM=0.557 ipTM=0.182 tol=0.964
2024-07-09 23:45:11,919 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=84.8 pTM=0.559 ipTM=0.184 tol=0.676
2024-07-09 23:45:54,644 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=84.8 pTM=0.561 ipTM=0.187 tol=0.98
2024-07-09 23:46:37,425 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=84.8 pTM=0.56 ipTM=0.187 tol=1.12
2024-07-09 23:47:20,182 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=84.9 pTM=0.561 ipTM=0.188 tol=0.908
2024-07-09 23:48:02,963 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=84.6 pTM=0.56 ipTM=0.189 tol=1.03
2024-07-09 23:48:45,734 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=84.8 pTM=0.561 ipTM=0.185 tol=0.779
2024-07-09 23:49:28,460 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=84.6 pTM=0.559 ipTM=0.187 tol=0.873
2024-07-09 23:50:11,218 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=84.7 pTM=0.558 ipTM=0.183 tol=0.754
2024-07-09 23:50:53,969 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=84.7 pTM=0.559 ipTM=0.184 tol=0.433
2024-07-09 23:50:53,970 alphafold2_multimer_v3_model_5_seed_000 took 1155.0s (26 recycles)
2024-07-09 23:50:54,970 reranking models by 'multimer' metric
2024-07-09 23:50:58,420 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-09 23:52:23,972 Relaxation took 89.0s
2024-07-09 23:52:23,972 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=84.5 pTM=0.547 ipTM=0.189
2024-07-09 23:53:20,364 Relaxation took 56.4s
2024-07-09 23:53:20,364 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.7 pTM=0.559 ipTM=0.184
2024-07-09 23:54:52,256 Relaxation took 91.9s
2024-07-09 23:54:52,256 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=85.1 pTM=0.545 ipTM=0.178
2024-07-09 23:56:40,312 Relaxation took 108.1s
2024-07-09 23:56:40,312 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=85.1 pTM=0.552 ipTM=0.172
2024-07-09 23:57:58,382 Relaxation took 78.1s
2024-07-09 23:57:58,382 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=84.4 pTM=0.538 ipTM=0.161
2024-07-09 23:58:00,985 Done