2024-07-10 06:05:07,969 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 06:05:08,291 Running on GPU
2024-07-10 06:05:12,068 Found 6 citations for tools or databases
2024-07-10 06:05:12,068 Query 1/1: FMO4_PCFT (length 1017)
2024-07-10 06:05:12,522 Sleeping for 10s. Reason: PENDING
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2024-07-10 06:10:03,004 Sleeping for 9s. Reason: RUNNING
2024-07-10 06:10:39,826 Sleeping for 7s. Reason: PENDING
2024-07-10 06:10:47,245 Sleeping for 10s. Reason: RUNNING
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2024-07-10 06:13:01,997 Sleeping for 5s. Reason: RUNNING
2024-07-10 06:13:07,422 Sleeping for 7s. Reason: RUNNING
2024-07-10 06:13:14,839 Sleeping for 7s. Reason: RUNNING
2024-07-10 06:13:22,263 Sleeping for 7s. Reason: RUNNING
2024-07-10 06:13:29,993 Sleeping for 10s. Reason: RUNNING
2024-07-10 06:13:40,454 Sleeping for 5s. Reason: RUNNING
2024-07-10 06:13:50,482 Setting max_seq=508, max_extra_seq=2048
2024-07-10 06:16:57,972 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78 pTM=0.576 ipTM=0.215
2024-07-10 06:17:20,972 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.4 pTM=0.57 ipTM=0.206 tol=4.06
2024-07-10 06:17:44,029 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.6 pTM=0.567 ipTM=0.232 tol=1.85
2024-07-10 06:18:07,127 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.6 pTM=0.561 ipTM=0.214 tol=2.61
2024-07-10 06:18:30,263 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.4 pTM=0.561 ipTM=0.202 tol=7.59
2024-07-10 06:18:53,426 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.5 pTM=0.565 ipTM=0.212 tol=2.69
2024-07-10 06:19:16,606 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.7 pTM=0.57 ipTM=0.221 tol=2.32
2024-07-10 06:19:39,776 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.8 pTM=0.572 ipTM=0.224 tol=1.1
2024-07-10 06:20:02,986 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.9 pTM=0.575 ipTM=0.225 tol=0.902
2024-07-10 06:20:26,203 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.8 pTM=0.566 ipTM=0.213 tol=4.56
2024-07-10 06:20:49,430 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=81.2 pTM=0.571 ipTM=0.221 tol=2.9
2024-07-10 06:21:12,638 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81 pTM=0.569 ipTM=0.216 tol=1.77
2024-07-10 06:21:35,846 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.8 pTM=0.569 ipTM=0.217 tol=1.16
2024-07-10 06:21:59,056 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=80.9 pTM=0.565 ipTM=0.211 tol=0.842
2024-07-10 06:22:22,287 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=81 pTM=0.569 ipTM=0.217 tol=1.66
2024-07-10 06:22:45,528 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=81.1 pTM=0.567 ipTM=0.214 tol=0.861
2024-07-10 06:23:08,769 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=80.9 pTM=0.571 ipTM=0.223 tol=2.35
2024-07-10 06:23:32,019 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=80.9 pTM=0.572 ipTM=0.223 tol=2.14
2024-07-10 06:23:55,265 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=80.8 pTM=0.573 ipTM=0.224 tol=2.17
2024-07-10 06:24:18,505 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=80.8 pTM=0.569 ipTM=0.219 tol=2.28
2024-07-10 06:24:41,768 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=80.8 pTM=0.571 ipTM=0.223 tol=1.82
2024-07-10 06:25:05,046 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=81 pTM=0.57 ipTM=0.218 tol=3.03
2024-07-10 06:25:28,306 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=80.8 pTM=0.568 ipTM=0.218 tol=1.33
2024-07-10 06:25:51,571 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=81.1 pTM=0.571 ipTM=0.219 tol=0.675
2024-07-10 06:26:14,818 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=80.8 pTM=0.567 ipTM=0.219 tol=0.623
2024-07-10 06:26:38,051 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=80.7 pTM=0.567 ipTM=0.218 tol=0.673
2024-07-10 06:27:01,301 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=80.8 pTM=0.571 ipTM=0.221 tol=0.609
2024-07-10 06:27:24,549 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=81.2 pTM=0.567 ipTM=0.215 tol=0.625
2024-07-10 06:27:47,794 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=81.1 pTM=0.573 ipTM=0.226 tol=0.578
2024-07-10 06:28:11,014 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=80.8 pTM=0.567 ipTM=0.217 tol=0.628
2024-07-10 06:28:34,250 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=81.1 pTM=0.571 ipTM=0.222 tol=0.749
2024-07-10 06:28:34,251 alphafold2_multimer_v3_model_1_seed_000 took 878.9s (30 recycles)
2024-07-10 06:28:58,112 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.1 pTM=0.582 ipTM=0.231
2024-07-10 06:29:21,379 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.3 pTM=0.582 ipTM=0.242 tol=4.19
2024-07-10 06:29:44,627 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.6 pTM=0.582 ipTM=0.248 tol=1.44
2024-07-10 06:30:07,879 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.9 pTM=0.581 ipTM=0.246 tol=0.578
2024-07-10 06:30:31,098 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.8 pTM=0.577 ipTM=0.245 tol=0.565
2024-07-10 06:30:54,341 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.8 pTM=0.578 ipTM=0.245 tol=0.523
2024-07-10 06:31:17,579 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.8 pTM=0.58 ipTM=0.25 tol=0.492
2024-07-10 06:31:17,580 alphafold2_multimer_v3_model_2_seed_000 took 162.7s (6 recycles)
2024-07-10 06:31:41,517 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80.2 pTM=0.566 ipTM=0.203
2024-07-10 06:32:04,837 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.6 pTM=0.566 ipTM=0.21 tol=4.01
2024-07-10 06:32:28,104 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.2 pTM=0.562 ipTM=0.207 tol=4.28
2024-07-10 06:32:51,412 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.2 pTM=0.564 ipTM=0.205 tol=4.79
2024-07-10 06:33:14,677 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.9 pTM=0.564 ipTM=0.214 tol=3.95
2024-07-10 06:33:37,930 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.8 pTM=0.566 ipTM=0.218 tol=2.62
2024-07-10 06:34:01,189 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.8 pTM=0.569 ipTM=0.224 tol=1.48
2024-07-10 06:34:24,434 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.6 pTM=0.568 ipTM=0.226 tol=2.68
2024-07-10 06:34:47,658 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.6 pTM=0.572 ipTM=0.24 tol=9.43
2024-07-10 06:35:10,855 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.6 pTM=0.586 ipTM=0.279 tol=2.8
2024-07-10 06:35:34,066 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=81.9 pTM=0.584 ipTM=0.273 tol=0.917
2024-07-10 06:35:57,244 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.9 pTM=0.6 ipTM=0.313 tol=1.05
2024-07-10 06:36:20,409 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=82.1 pTM=0.604 ipTM=0.318 tol=0.62
2024-07-10 06:36:43,557 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=82.1 pTM=0.622 ipTM=0.357 tol=0.81
2024-07-10 06:37:06,724 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=82.5 pTM=0.619 ipTM=0.347 tol=0.518
2024-07-10 06:37:29,870 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=82.4 pTM=0.639 ipTM=0.389 tol=0.572
2024-07-10 06:37:53,035 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=82.4 pTM=0.641 ipTM=0.396 tol=0.327
2024-07-10 06:37:53,036 alphafold2_multimer_v3_model_3_seed_000 took 394.8s (16 recycles)
2024-07-10 06:38:16,961 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.1 pTM=0.572 ipTM=0.217
2024-07-10 06:38:40,257 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.4 pTM=0.577 ipTM=0.232 tol=11.9
2024-07-10 06:39:03,529 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.571 ipTM=0.219 tol=3.03
2024-07-10 06:39:26,816 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79 pTM=0.571 ipTM=0.22 tol=1.27
2024-07-10 06:39:50,086 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.9 pTM=0.572 ipTM=0.227 tol=0.661
2024-07-10 06:40:13,355 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.1 pTM=0.572 ipTM=0.224 tol=0.433
2024-07-10 06:40:13,355 alphafold2_multimer_v3_model_4_seed_000 took 139.7s (5 recycles)
2024-07-10 06:40:37,285 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=80.1 pTM=0.593 ipTM=0.248
2024-07-10 06:41:00,628 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.1 pTM=0.591 ipTM=0.243 tol=1.69
2024-07-10 06:41:23,944 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.4 pTM=0.581 ipTM=0.228 tol=1.13
2024-07-10 06:41:47,261 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=81.8 pTM=0.582 ipTM=0.227 tol=1.29
2024-07-10 06:42:10,619 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=81.8 pTM=0.577 ipTM=0.22 tol=0.862
2024-07-10 06:42:33,954 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=81.7 pTM=0.578 ipTM=0.222 tol=0.884
2024-07-10 06:42:57,335 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.7 pTM=0.574 ipTM=0.213 tol=0.794
2024-07-10 06:43:20,695 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=81.5 pTM=0.577 ipTM=0.22 tol=0.857
2024-07-10 06:43:44,058 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=81.2 pTM=0.573 ipTM=0.215 tol=1.17
2024-07-10 06:44:07,434 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=81.1 pTM=0.573 ipTM=0.213 tol=1.74
2024-07-10 06:44:30,827 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=81.4 pTM=0.574 ipTM=0.211 tol=3.16
2024-07-10 06:44:54,169 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=81.4 pTM=0.581 ipTM=0.228 tol=6.26
2024-07-10 06:45:17,506 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=81.4 pTM=0.579 ipTM=0.229 tol=3.38
2024-07-10 06:45:40,863 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=81.7 pTM=0.58 ipTM=0.233 tol=1.4
2024-07-10 06:46:04,233 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=81.9 pTM=0.583 ipTM=0.235 tol=1.25
2024-07-10 06:46:27,565 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=81.6 pTM=0.583 ipTM=0.234 tol=2.06
2024-07-10 06:46:50,898 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=81.8 pTM=0.588 ipTM=0.245 tol=3.38
2024-07-10 06:47:14,234 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=81.8 pTM=0.587 ipTM=0.243 tol=1.27
2024-07-10 06:47:37,558 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=81.6 pTM=0.59 ipTM=0.245 tol=1.74
2024-07-10 06:48:00,895 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=81.6 pTM=0.585 ipTM=0.239 tol=2.12
2024-07-10 06:48:24,230 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=81.6 pTM=0.586 ipTM=0.24 tol=1.26
2024-07-10 06:48:47,557 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=81.5 pTM=0.601 ipTM=0.278 tol=5.39
2024-07-10 06:49:10,911 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=81.8 pTM=0.591 ipTM=0.245 tol=4.27
2024-07-10 06:49:34,250 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=81.7 pTM=0.587 ipTM=0.238 tol=2.59
2024-07-10 06:49:57,570 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=81.4 pTM=0.584 ipTM=0.24 tol=1.11
2024-07-10 06:50:20,856 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=81 pTM=0.597 ipTM=0.275 tol=5.34
2024-07-10 06:50:44,195 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=81.5 pTM=0.589 ipTM=0.247 tol=4.89
2024-07-10 06:51:07,534 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=81.6 pTM=0.583 ipTM=0.237 tol=1.79
2024-07-10 06:51:30,861 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=81.4 pTM=0.586 ipTM=0.244 tol=1.89
2024-07-10 06:51:54,132 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=81 pTM=0.605 ipTM=0.297 tol=6.34
2024-07-10 06:52:17,467 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=81.3 pTM=0.589 ipTM=0.247 tol=4.2
2024-07-10 06:52:17,468 alphafold2_multimer_v3_model_5_seed_000 took 723.5s (30 recycles)
2024-07-10 06:52:18,101 reranking models by 'multimer' metric
2024-07-10 06:52:19,155 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 06:53:15,379 Relaxation took 57.3s
2024-07-10 06:53:15,379 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.4 pTM=0.641 ipTM=0.396
2024-07-10 06:53:44,465 Relaxation took 29.1s
2024-07-10 06:53:44,465 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.8 pTM=0.58 ipTM=0.25
2024-07-10 06:54:15,399 Relaxation took 30.9s
2024-07-10 06:54:15,399 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=81.3 pTM=0.589 ipTM=0.247
2024-07-10 06:55:51,235 Relaxation took 95.8s
2024-07-10 06:55:51,235 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.1 pTM=0.572 ipTM=0.224
2024-07-10 06:56:33,248 Relaxation took 42.0s
2024-07-10 06:56:33,248 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.1 pTM=0.571 ipTM=0.222
2024-07-10 06:56:35,473 Done