2024-07-10 09:06:22,095 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 09:06:22,425 Running on GPU
2024-07-10 09:06:26,185 Found 6 citations for tools or databases
2024-07-10 09:06:26,186 Query 1/1: GBG13_YV004 (length 195)
2024-07-10 09:06:26,640 Sleeping for 7s. Reason: PENDING
2024-07-10 09:06:34,061 Sleeping for 7s. Reason: RUNNING
2024-07-10 09:06:41,491 Sleeping for 6s. Reason: RUNNING
2024-07-10 09:06:49,035 Sleeping for 8s. Reason: RUNNING
2024-07-10 09:06:57,458 Sleeping for 8s. Reason: RUNNING
2024-07-10 09:07:05,914 Sleeping for 7s. Reason: RUNNING
2024-07-10 09:07:13,333 Sleeping for 9s. Reason: RUNNING
2024-07-10 09:07:22,755 Sleeping for 6s. Reason: RUNNING
2024-07-10 09:07:32,278 Sleeping for 8s. Reason: PENDING
2024-07-10 09:07:40,703 Sleeping for 9s. Reason: RUNNING
2024-07-10 09:07:50,113 Sleeping for 6s. Reason: RUNNING
2024-07-10 09:07:57,431 Setting max_seq=508, max_extra_seq=1543
2024-07-10 09:10:37,432 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=34.3 pTM=0.273 ipTM=0.154
2024-07-10 09:10:39,130 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=35.5 pTM=0.246 ipTM=0.128 tol=11.5
2024-07-10 09:10:40,827 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=36.1 pTM=0.24 ipTM=0.122 tol=4.6
2024-07-10 09:10:42,521 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=36.8 pTM=0.242 ipTM=0.122 tol=2.9
2024-07-10 09:10:44,218 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=36.8 pTM=0.232 ipTM=0.12 tol=2.44
2024-07-10 09:10:45,913 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=36.3 pTM=0.244 ipTM=0.125 tol=2.31
2024-07-10 09:10:47,611 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=37.6 pTM=0.247 ipTM=0.128 tol=1.9
2024-07-10 09:10:49,306 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=37.2 pTM=0.247 ipTM=0.128 tol=1.35
2024-07-10 09:10:51,004 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=37.3 pTM=0.234 ipTM=0.12 tol=1.04
2024-07-10 09:10:52,701 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=36.4 pTM=0.24 ipTM=0.123 tol=2.3
2024-07-10 09:10:54,399 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=36.8 pTM=0.236 ipTM=0.124 tol=1.94
2024-07-10 09:10:56,094 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=37 pTM=0.237 ipTM=0.124 tol=1.03
2024-07-10 09:10:57,792 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=37 pTM=0.239 ipTM=0.127 tol=0.603
2024-07-10 09:10:59,488 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=37.3 pTM=0.251 ipTM=0.133 tol=0.647
2024-07-10 09:11:01,186 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=36.8 pTM=0.24 ipTM=0.126 tol=0.529
2024-07-10 09:11:02,882 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=37.5 pTM=0.259 ipTM=0.136 tol=0.556
2024-07-10 09:11:04,580 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=37.7 pTM=0.253 ipTM=0.135 tol=0.567
2024-07-10 09:11:06,277 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=36.8 pTM=0.255 ipTM=0.133 tol=0.947
2024-07-10 09:11:07,975 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=37.2 pTM=0.247 ipTM=0.13 tol=0.759
2024-07-10 09:11:09,671 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=36.8 pTM=0.25 ipTM=0.131 tol=0.809
2024-07-10 09:11:11,368 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=37.2 pTM=0.24 ipTM=0.129 tol=0.989
2024-07-10 09:11:13,064 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=36.4 pTM=0.241 ipTM=0.126 tol=0.764
2024-07-10 09:11:14,762 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=36.8 pTM=0.246 ipTM=0.129 tol=0.742
2024-07-10 09:11:16,456 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=36.3 pTM=0.248 ipTM=0.13 tol=1.35
2024-07-10 09:11:18,149 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=37.5 pTM=0.243 ipTM=0.13 tol=1.44
2024-07-10 09:11:19,839 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=36.6 pTM=0.246 ipTM=0.13 tol=0.771
2024-07-10 09:11:21,533 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=37.5 pTM=0.249 ipTM=0.132 tol=0.473
2024-07-10 09:11:21,535 alphafold2_multimer_v3_model_1_seed_000 took 199.2s (26 recycles)
2024-07-10 09:11:23,265 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=33.5 pTM=0.277 ipTM=0.148
2024-07-10 09:11:24,958 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=34 pTM=0.266 ipTM=0.135 tol=3.86
2024-07-10 09:11:26,651 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=34.7 pTM=0.255 ipTM=0.122 tol=7.88
2024-07-10 09:11:28,342 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=36.7 pTM=0.261 ipTM=0.122 tol=6.02
2024-07-10 09:11:30,035 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=36.7 pTM=0.258 ipTM=0.121 tol=1.71
2024-07-10 09:11:31,727 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=37 pTM=0.258 ipTM=0.121 tol=1.19
2024-07-10 09:11:33,420 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=37.2 pTM=0.254 ipTM=0.117 tol=1.37
2024-07-10 09:11:35,111 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=36.7 pTM=0.249 ipTM=0.117 tol=1.09
2024-07-10 09:11:36,805 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=36.7 pTM=0.243 ipTM=0.114 tol=1.15
2024-07-10 09:11:38,496 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=36.8 pTM=0.252 ipTM=0.117 tol=0.913
2024-07-10 09:11:40,189 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=36.4 pTM=0.242 ipTM=0.114 tol=1.61
2024-07-10 09:11:41,880 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=36.6 pTM=0.249 ipTM=0.117 tol=1.25
2024-07-10 09:11:43,573 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=36.6 pTM=0.245 ipTM=0.114 tol=0.975
2024-07-10 09:11:45,264 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=37.3 pTM=0.259 ipTM=0.122 tol=1.01
2024-07-10 09:11:46,958 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=37 pTM=0.251 ipTM=0.117 tol=0.642
2024-07-10 09:11:48,650 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=37.4 pTM=0.259 ipTM=0.123 tol=0.672
2024-07-10 09:11:50,345 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=37.1 pTM=0.254 ipTM=0.121 tol=0.625
2024-07-10 09:11:52,039 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=37.2 pTM=0.255 ipTM=0.121 tol=0.519
2024-07-10 09:11:53,732 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=37.2 pTM=0.255 ipTM=0.12 tol=0.461
2024-07-10 09:11:53,732 alphafold2_multimer_v3_model_2_seed_000 took 32.2s (18 recycles)
2024-07-10 09:11:55,462 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=31.8 pTM=0.209 ipTM=0.117
2024-07-10 09:11:57,153 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=32.8 pTM=0.21 ipTM=0.12 tol=4.5
2024-07-10 09:11:58,847 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=33.8 pTM=0.22 ipTM=0.129 tol=1.96
2024-07-10 09:12:00,538 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=34.7 pTM=0.229 ipTM=0.134 tol=1.17
2024-07-10 09:12:02,232 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=34.8 pTM=0.228 ipTM=0.132 tol=0.767
2024-07-10 09:12:03,923 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=35.1 pTM=0.227 ipTM=0.131 tol=0.504
2024-07-10 09:12:05,616 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=35.2 pTM=0.225 ipTM=0.129 tol=0.464
2024-07-10 09:12:05,616 alphafold2_multimer_v3_model_3_seed_000 took 11.8s (6 recycles)
2024-07-10 09:12:07,348 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=33.3 pTM=0.245 ipTM=0.145
2024-07-10 09:12:09,042 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=34 pTM=0.251 ipTM=0.133 tol=9.98
2024-07-10 09:12:10,738 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=34.5 pTM=0.248 ipTM=0.13 tol=5.25
2024-07-10 09:12:12,431 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=35.2 pTM=0.263 ipTM=0.137 tol=1.86
2024-07-10 09:12:14,126 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=35.1 pTM=0.259 ipTM=0.134 tol=1.55
2024-07-10 09:12:15,818 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=35.2 pTM=0.261 ipTM=0.135 tol=1.39
2024-07-10 09:12:17,513 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=35.5 pTM=0.262 ipTM=0.138 tol=2.72
2024-07-10 09:12:19,205 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=35.7 pTM=0.263 ipTM=0.14 tol=1.94
2024-07-10 09:12:20,900 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=36 pTM=0.266 ipTM=0.143 tol=1.71
2024-07-10 09:12:22,592 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=36 pTM=0.268 ipTM=0.143 tol=0.599
2024-07-10 09:12:24,286 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=36.1 pTM=0.268 ipTM=0.142 tol=0.441
2024-07-10 09:12:24,287 alphafold2_multimer_v3_model_4_seed_000 took 18.6s (10 recycles)
2024-07-10 09:12:26,017 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=32 pTM=0.239 ipTM=0.129
2024-07-10 09:12:27,710 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=32.5 pTM=0.249 ipTM=0.136 tol=6.44
2024-07-10 09:12:29,404 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=32.3 pTM=0.236 ipTM=0.131 tol=3.62
2024-07-10 09:12:31,096 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=33.2 pTM=0.248 ipTM=0.142 tol=3.77
2024-07-10 09:12:32,790 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=33.3 pTM=0.251 ipTM=0.138 tol=3.54
2024-07-10 09:12:34,482 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=32.8 pTM=0.239 ipTM=0.133 tol=2.07
2024-07-10 09:12:36,176 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=33.3 pTM=0.24 ipTM=0.134 tol=2.36
2024-07-10 09:12:37,867 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=33.4 pTM=0.245 ipTM=0.146 tol=2.05
2024-07-10 09:12:39,561 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=33.4 pTM=0.245 ipTM=0.137 tol=2.38
2024-07-10 09:12:41,253 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=33 pTM=0.24 ipTM=0.134 tol=4.05
2024-07-10 09:12:42,948 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=33.5 pTM=0.251 ipTM=0.146 tol=2.67
2024-07-10 09:12:44,640 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=33 pTM=0.242 ipTM=0.138 tol=1.08
2024-07-10 09:12:46,334 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=33 pTM=0.242 ipTM=0.136 tol=1.07
2024-07-10 09:12:48,028 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=32.9 pTM=0.239 ipTM=0.136 tol=0.617
2024-07-10 09:12:49,722 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=33.1 pTM=0.241 ipTM=0.135 tol=0.632
2024-07-10 09:12:51,414 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=33.3 pTM=0.245 ipTM=0.139 tol=0.911
2024-07-10 09:12:53,107 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=33.1 pTM=0.244 ipTM=0.137 tol=0.871
2024-07-10 09:12:54,799 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=32.9 pTM=0.241 ipTM=0.136 tol=0.983
2024-07-10 09:12:56,493 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=32.9 pTM=0.244 ipTM=0.136 tol=1.16
2024-07-10 09:12:58,185 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=32.8 pTM=0.242 ipTM=0.135 tol=0.785
2024-07-10 09:12:59,879 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=33 pTM=0.244 ipTM=0.135 tol=0.876
2024-07-10 09:13:01,570 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=32.7 pTM=0.241 ipTM=0.135 tol=0.9
2024-07-10 09:13:03,265 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=33.2 pTM=0.244 ipTM=0.134 tol=0.666
2024-07-10 09:13:04,957 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=32.8 pTM=0.238 ipTM=0.133 tol=0.414
2024-07-10 09:13:04,957 alphafold2_multimer_v3_model_5_seed_000 took 40.6s (23 recycles)
2024-07-10 09:13:04,993 reranking models by 'multimer' metric
2024-07-10 09:13:07,766 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 09:13:19,475 Relaxation took 14.5s
2024-07-10 09:13:19,475 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=36.1 pTM=0.268 ipTM=0.142
2024-07-10 09:13:29,481 Relaxation took 10.0s
2024-07-10 09:13:29,481 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=37.5 pTM=0.249 ipTM=0.132
2024-07-10 09:13:38,723 Relaxation took 9.2s
2024-07-10 09:13:38,723 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=32.8 pTM=0.238 ipTM=0.133
2024-07-10 09:13:43,559 Relaxation took 4.8s
2024-07-10 09:13:43,559 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=35.2 pTM=0.225 ipTM=0.129
2024-07-10 09:13:49,491 Relaxation took 5.9s
2024-07-10 09:13:49,491 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=37.2 pTM=0.255 ipTM=0.12
2024-07-10 09:13:50,290 Done