2024-07-10 10:30:33,764 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 10:30:34,095 Running on GPU
2024-07-10 10:30:37,936 Found 6 citations for tools or databases
2024-07-10 10:30:37,936 Query 1/1: GIMD1_OR8I2 (length 527)
2024-07-10 10:30:38,544 Sleeping for 5s. Reason: PENDING
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2024-07-10 10:32:01,245 Sleeping for 8s. Reason: RUNNING
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2024-07-10 10:32:18,104 Sleeping for 6s. Reason: RUNNING
2024-07-10 10:32:31,869 Sleeping for 7s. Reason: PENDING
2024-07-10 10:32:39,319 Sleeping for 6s. Reason: RUNNING
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2024-07-10 10:34:05,542 Setting max_seq=508, max_extra_seq=2048
2024-07-10 10:36:49,864 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.8 pTM=0.581 ipTM=0.197
2024-07-10 10:36:55,649 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.1 pTM=0.592 ipTM=0.235 tol=12.1
2024-07-10 10:37:01,430 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.8 pTM=0.597 ipTM=0.267 tol=2.45
2024-07-10 10:37:07,218 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.2 pTM=0.635 ipTM=0.344 tol=1.11
2024-07-10 10:37:13,006 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.1 pTM=0.634 ipTM=0.344 tol=0.231
2024-07-10 10:37:13,007 alphafold2_multimer_v3_model_1_seed_000 took 182.3s (4 recycles)
2024-07-10 10:37:18,999 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80.8 pTM=0.593 ipTM=0.202
2024-07-10 10:37:24,806 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.6 pTM=0.597 ipTM=0.228 tol=12.1
2024-07-10 10:37:30,610 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.9 pTM=0.587 ipTM=0.223 tol=1.5
2024-07-10 10:37:36,416 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=82.2 pTM=0.622 ipTM=0.308 tol=0.956
2024-07-10 10:37:42,218 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82.2 pTM=0.623 ipTM=0.315 tol=0.25
2024-07-10 10:37:42,218 alphafold2_multimer_v3_model_2_seed_000 took 29.0s (4 recycles)
2024-07-10 10:37:48,210 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.8 pTM=0.608 ipTM=0.272
2024-07-10 10:37:54,027 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.1 pTM=0.6 ipTM=0.256 tol=12.3
2024-07-10 10:37:59,847 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79 pTM=0.58 ipTM=0.212 tol=2.45
2024-07-10 10:38:05,668 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.8 pTM=0.603 ipTM=0.257 tol=1.8
2024-07-10 10:38:11,485 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.9 pTM=0.607 ipTM=0.291 tol=1.28
2024-07-10 10:38:17,314 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=78.9 pTM=0.579 ipTM=0.201 tol=1.7
2024-07-10 10:38:23,145 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=78.7 pTM=0.581 ipTM=0.206 tol=0.687
2024-07-10 10:38:28,979 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=78.5 pTM=0.575 ipTM=0.192 tol=2.92
2024-07-10 10:38:34,815 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.5 pTM=0.575 ipTM=0.185 tol=1.2
2024-07-10 10:38:40,644 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.1 pTM=0.584 ipTM=0.219 tol=3.04
2024-07-10 10:38:46,473 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78.9 pTM=0.59 ipTM=0.226 tol=1.91
2024-07-10 10:38:52,301 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.1 pTM=0.594 ipTM=0.251 tol=1.41
2024-07-10 10:38:58,130 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79 pTM=0.589 ipTM=0.234 tol=1.04
2024-07-10 10:39:03,968 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.3 pTM=0.576 ipTM=0.194 tol=2.62
2024-07-10 10:39:09,807 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=77.9 pTM=0.575 ipTM=0.187 tol=1.09
2024-07-10 10:39:15,638 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.1 pTM=0.574 ipTM=0.194 tol=0.913
2024-07-10 10:39:21,473 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.1 pTM=0.577 ipTM=0.192 tol=1.19
2024-07-10 10:39:27,304 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.7 pTM=0.582 ipTM=0.214 tol=1.96
2024-07-10 10:39:33,130 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=78.5 pTM=0.594 ipTM=0.248 tol=2.29
2024-07-10 10:39:38,962 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=78.1 pTM=0.592 ipTM=0.247 tol=1.14
2024-07-10 10:39:44,789 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=78.3 pTM=0.593 ipTM=0.242 tol=1.17
2024-07-10 10:39:50,613 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=78.5 pTM=0.601 ipTM=0.282 tol=1.15
2024-07-10 10:39:56,440 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=78.1 pTM=0.586 ipTM=0.228 tol=1.18
2024-07-10 10:40:02,266 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=78.4 pTM=0.588 ipTM=0.24 tol=0.651
2024-07-10 10:40:08,100 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=78.4 pTM=0.596 ipTM=0.252 tol=1.09
2024-07-10 10:40:13,926 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=78.5 pTM=0.589 ipTM=0.248 tol=1.32
2024-07-10 10:40:19,755 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=79.2 pTM=0.605 ipTM=0.274 tol=1.14
2024-07-10 10:40:25,584 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=79.3 pTM=0.608 ipTM=0.299 tol=1.3
2024-07-10 10:40:31,414 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=78.5 pTM=0.589 ipTM=0.231 tol=1.76
2024-07-10 10:40:37,244 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=78.6 pTM=0.588 ipTM=0.233 tol=1.25
2024-07-10 10:40:43,073 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=78.8 pTM=0.6 ipTM=0.259 tol=1.35
2024-07-10 10:40:43,074 alphafold2_multimer_v3_model_3_seed_000 took 180.7s (30 recycles)
2024-07-10 10:40:49,094 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.2 pTM=0.749 ipTM=0.629
2024-07-10 10:40:54,941 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.6 pTM=0.602 ipTM=0.257 tol=1.81
2024-07-10 10:41:00,797 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.2 pTM=0.582 ipTM=0.195 tol=3.07
2024-07-10 10:41:06,655 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.9 pTM=0.582 ipTM=0.184 tol=1.95
2024-07-10 10:41:12,506 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.7 pTM=0.585 ipTM=0.195 tol=1.58
2024-07-10 10:41:18,368 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.5 pTM=0.583 ipTM=0.189 tol=5.12
2024-07-10 10:41:24,226 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.2 pTM=0.585 ipTM=0.199 tol=3.98
2024-07-10 10:41:30,087 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.6 pTM=0.581 ipTM=0.188 tol=3.83
2024-07-10 10:41:35,952 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.4 pTM=0.584 ipTM=0.192 tol=2.01
2024-07-10 10:41:41,811 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.7 pTM=0.585 ipTM=0.194 tol=2.01
2024-07-10 10:41:47,666 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.6 pTM=0.589 ipTM=0.206 tol=2.12
2024-07-10 10:41:53,512 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.6 pTM=0.586 ipTM=0.201 tol=2.05
2024-07-10 10:41:59,367 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=77.5 pTM=0.587 ipTM=0.202 tol=2.13
2024-07-10 10:42:05,219 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.7 pTM=0.585 ipTM=0.2 tol=1.99
2024-07-10 10:42:11,069 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77.3 pTM=0.585 ipTM=0.206 tol=2.25
2024-07-10 10:42:16,919 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=76.8 pTM=0.581 ipTM=0.193 tol=2.28
2024-07-10 10:42:22,767 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.7 pTM=0.588 ipTM=0.204 tol=2.55
2024-07-10 10:42:28,617 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=77.6 pTM=0.584 ipTM=0.202 tol=2.27
2024-07-10 10:42:34,466 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77.3 pTM=0.587 ipTM=0.203 tol=1.29
2024-07-10 10:42:40,324 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=76.9 pTM=0.584 ipTM=0.199 tol=1.1
2024-07-10 10:42:46,179 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.2 pTM=0.587 ipTM=0.205 tol=1.08
2024-07-10 10:42:52,032 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=76.9 pTM=0.583 ipTM=0.201 tol=0.89
2024-07-10 10:42:57,887 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=76.9 pTM=0.584 ipTM=0.2 tol=1.19
2024-07-10 10:43:03,742 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=77.1 pTM=0.583 ipTM=0.199 tol=1.17
2024-07-10 10:43:09,597 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=76.8 pTM=0.582 ipTM=0.197 tol=1.18
2024-07-10 10:43:15,450 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=77.2 pTM=0.583 ipTM=0.198 tol=2.13
2024-07-10 10:43:21,301 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=77.8 pTM=0.587 ipTM=0.2 tol=1.91
2024-07-10 10:43:27,151 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=77.3 pTM=0.584 ipTM=0.198 tol=2.12
2024-07-10 10:43:33,013 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=77.4 pTM=0.587 ipTM=0.209 tol=2.6
2024-07-10 10:43:38,871 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=77.1 pTM=0.585 ipTM=0.206 tol=1.89
2024-07-10 10:43:44,724 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=77.1 pTM=0.585 ipTM=0.208 tol=1.85
2024-07-10 10:43:44,725 alphafold2_multimer_v3_model_4_seed_000 took 181.5s (30 recycles)
2024-07-10 10:43:50,755 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.6 pTM=0.585 ipTM=0.205
2024-07-10 10:43:56,612 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.3 pTM=0.577 ipTM=0.188 tol=11.6
2024-07-10 10:44:02,469 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.6 pTM=0.575 ipTM=0.177 tol=1.5
2024-07-10 10:44:08,319 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.1 pTM=0.588 ipTM=0.201 tol=3.7
2024-07-10 10:44:14,161 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.6 pTM=0.583 ipTM=0.191 tol=1.51
2024-07-10 10:44:20,006 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.5 pTM=0.589 ipTM=0.212 tol=1.54
2024-07-10 10:44:25,854 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.1 pTM=0.582 ipTM=0.195 tol=1.6
2024-07-10 10:44:31,704 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.4 pTM=0.588 ipTM=0.204 tol=1.63
2024-07-10 10:44:37,550 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.2 pTM=0.583 ipTM=0.195 tol=1.37
2024-07-10 10:44:43,396 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.1 pTM=0.587 ipTM=0.207 tol=1.81
2024-07-10 10:44:49,244 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.2 pTM=0.586 ipTM=0.202 tol=1.25
2024-07-10 10:44:55,091 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.1 pTM=0.586 ipTM=0.206 tol=1.32
2024-07-10 10:45:00,938 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.3 pTM=0.585 ipTM=0.205 tol=1.37
2024-07-10 10:45:06,785 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.1 pTM=0.582 ipTM=0.2 tol=0.713
2024-07-10 10:45:12,630 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.8 pTM=0.587 ipTM=0.214 tol=0.714
2024-07-10 10:45:18,476 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=77.4 pTM=0.58 ipTM=0.197 tol=0.689
2024-07-10 10:45:24,322 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=77.7 pTM=0.586 ipTM=0.208 tol=0.616
2024-07-10 10:45:30,170 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=77.6 pTM=0.581 ipTM=0.198 tol=0.475
2024-07-10 10:45:30,170 alphafold2_multimer_v3_model_5_seed_000 took 105.3s (17 recycles)
2024-07-10 10:45:30,354 reranking models by 'multimer' metric
2024-07-10 10:45:33,213 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 10:45:49,277 Relaxation took 18.9s
2024-07-10 10:45:49,277 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.1 pTM=0.634 ipTM=0.344
2024-07-10 10:46:01,802 Relaxation took 12.5s
2024-07-10 10:46:01,803 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=82.2 pTM=0.623 ipTM=0.315
2024-07-10 10:46:13,752 Relaxation took 11.9s
2024-07-10 10:46:13,752 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.8 pTM=0.6 ipTM=0.259
2024-07-10 10:46:28,445 Relaxation took 14.7s
2024-07-10 10:46:28,446 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.1 pTM=0.585 ipTM=0.208
2024-07-10 10:46:49,108 Relaxation took 20.7s
2024-07-10 10:46:49,108 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.6 pTM=0.581 ipTM=0.198
2024-07-10 10:46:50,200 Done