2024-07-10 11:24:16,452 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-10 11:24:16,765 Running on GPU 2024-07-10 11:24:20,715 Found 6 citations for tools or databases 2024-07-10 11:24:20,715 Query 1/1: GLYLB_MED19 (length 546) 2024-07-10 11:24:21,149 Sleeping for 5s. Reason: PENDING 2024-07-10 11:24:26,580 Sleeping for 6s. Reason: RUNNING 2024-07-10 11:24:32,993 Sleeping for 7s. Reason: RUNNING 2024-07-10 11:24:40,447 Sleeping for 10s. Reason: RUNNING 2024-07-10 11:24:51,163 Sleeping for 9s. Reason: RUNNING 2024-07-10 11:25:00,571 Sleeping for 6s. Reason: RUNNING 2024-07-10 11:25:06,983 Sleeping for 8s. Reason: RUNNING 2024-07-10 11:25:17,756 Sleeping for 6s. Reason: PENDING 2024-07-10 11:25:24,177 Sleeping for 9s. Reason: RUNNING 2024-07-10 11:25:33,608 Sleeping for 5s. Reason: RUNNING 2024-07-10 11:25:39,012 Sleeping for 8s. Reason: RUNNING 2024-07-10 11:25:50,151 Setting max_seq=508, max_extra_seq=2048 2024-07-10 11:28:25,663 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58.8 pTM=0.552 ipTM=0.19 2024-07-10 11:28:33,494 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=58.8 pTM=0.564 ipTM=0.312 tol=6.51 2024-07-10 11:28:41,329 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=58.5 pTM=0.559 ipTM=0.234 tol=5.54 2024-07-10 11:28:49,164 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=58.2 pTM=0.561 ipTM=0.259 tol=5.41 2024-07-10 11:28:57,006 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=58.3 pTM=0.561 ipTM=0.229 tol=3.25 2024-07-10 11:29:04,852 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.1 pTM=0.563 ipTM=0.257 tol=4.74 2024-07-10 11:29:12,703 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=57.9 pTM=0.563 ipTM=0.225 tol=5.44 2024-07-10 11:29:20,557 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=57.8 pTM=0.565 ipTM=0.274 tol=4.88 2024-07-10 11:29:28,412 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=57.7 pTM=0.567 ipTM=0.228 tol=2.36 2024-07-10 11:29:36,255 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=57.6 pTM=0.57 ipTM=0.271 tol=6.82 2024-07-10 11:29:44,106 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=57.6 pTM=0.57 ipTM=0.222 tol=2.78 2024-07-10 11:29:51,961 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=57.5 pTM=0.575 ipTM=0.266 tol=3.74 2024-07-10 11:29:59,809 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=57.6 pTM=0.571 ipTM=0.243 tol=2.97 2024-07-10 11:30:07,664 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=57.4 pTM=0.573 ipTM=0.256 tol=2.81 2024-07-10 11:30:15,510 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=57.4 pTM=0.571 ipTM=0.233 tol=2.31 2024-07-10 11:30:23,358 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=57.7 pTM=0.574 ipTM=0.24 tol=2.47 2024-07-10 11:30:31,208 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=57.5 pTM=0.574 ipTM=0.23 tol=3.32 2024-07-10 11:30:39,066 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=57.3 pTM=0.573 ipTM=0.233 tol=3.03 2024-07-10 11:30:46,934 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=57.6 pTM=0.573 ipTM=0.219 tol=4.44 2024-07-10 11:30:54,783 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=57.3 pTM=0.574 ipTM=0.223 tol=2.55 2024-07-10 11:31:02,653 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=57.3 pTM=0.574 ipTM=0.223 tol=4.2 2024-07-10 11:31:10,504 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=57.8 pTM=0.577 ipTM=0.228 tol=3.63 2024-07-10 11:31:18,354 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=57.8 pTM=0.575 ipTM=0.225 tol=4.41 2024-07-10 11:31:26,221 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=57.9 pTM=0.576 ipTM=0.234 tol=5.48 2024-07-10 11:31:34,079 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58 pTM=0.575 ipTM=0.217 tol=6.27 2024-07-10 11:31:41,937 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.2 pTM=0.578 ipTM=0.243 tol=4.03 2024-07-10 11:31:49,799 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=58.1 pTM=0.576 ipTM=0.228 tol=4.7 2024-07-10 11:31:57,662 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58.2 pTM=0.579 ipTM=0.257 tol=4.68 2024-07-10 11:32:05,533 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=57.9 pTM=0.574 ipTM=0.215 tol=3.17 2024-07-10 11:32:13,393 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=58.2 pTM=0.579 ipTM=0.262 tol=3.86 2024-07-10 11:32:21,257 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.1 pTM=0.575 ipTM=0.24 tol=3.82 2024-07-10 11:32:21,257 alphafold2_multimer_v3_model_1_seed_000 took 386.2s (30 recycles) 2024-07-10 11:32:29,293 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=61.5 pTM=0.561 ipTM=0.388 2024-07-10 11:32:37,148 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.3 pTM=0.557 ipTM=0.222 tol=12.1 2024-07-10 11:32:45,013 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=61.3 pTM=0.573 ipTM=0.261 tol=11.1 2024-07-10 11:32:52,870 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=60.9 pTM=0.566 ipTM=0.229 tol=4.78 2024-07-10 11:33:00,725 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.4 pTM=0.563 ipTM=0.232 tol=3.8 2024-07-10 11:33:08,582 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.7 pTM=0.567 ipTM=0.225 tol=3.01 2024-07-10 11:33:16,438 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=61 pTM=0.571 ipTM=0.251 tol=2.38 2024-07-10 11:33:24,303 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=61.1 pTM=0.57 ipTM=0.229 tol=1.75 2024-07-10 11:33:32,176 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=61.4 pTM=0.573 ipTM=0.399 tol=2.98 2024-07-10 11:33:40,034 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=61.5 pTM=0.573 ipTM=0.483 tol=2.36 2024-07-10 11:33:47,895 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=61.7 pTM=0.572 ipTM=0.585 tol=3.62 2024-07-10 11:33:55,749 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=61.4 pTM=0.571 ipTM=0.642 tol=2.76 2024-07-10 11:34:03,617 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=61.2 pTM=0.569 ipTM=0.665 tol=5.47 2024-07-10 11:34:11,497 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.9 pTM=0.571 ipTM=0.695 tol=6.6 2024-07-10 11:34:19,373 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=61.1 pTM=0.572 ipTM=0.696 tol=4.93 2024-07-10 11:34:27,252 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=61.1 pTM=0.572 ipTM=0.697 tol=4.09 2024-07-10 11:34:35,119 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=61 pTM=0.572 ipTM=0.678 tol=3.18 2024-07-10 11:34:42,988 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.9 pTM=0.572 ipTM=0.688 tol=3.15 2024-07-10 11:34:50,857 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=61.2 pTM=0.571 ipTM=0.702 tol=3.23 2024-07-10 11:34:58,722 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=61 pTM=0.573 ipTM=0.701 tol=2.79 2024-07-10 11:35:06,599 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61.1 pTM=0.572 ipTM=0.699 tol=3.92 2024-07-10 11:35:14,460 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=61.2 pTM=0.573 ipTM=0.693 tol=2.9 2024-07-10 11:35:22,327 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=61 pTM=0.572 ipTM=0.693 tol=2.97 2024-07-10 11:35:30,192 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.9 pTM=0.572 ipTM=0.69 tol=2.43 2024-07-10 11:35:38,057 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=61 pTM=0.572 ipTM=0.683 tol=2.75 2024-07-10 11:35:45,938 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=61 pTM=0.573 ipTM=0.702 tol=2.35 2024-07-10 11:35:53,801 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61 pTM=0.572 ipTM=0.677 tol=1.68 2024-07-10 11:36:01,667 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=61 pTM=0.573 ipTM=0.684 tol=4.24 2024-07-10 11:36:09,529 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=61.2 pTM=0.572 ipTM=0.675 tol=3.28 2024-07-10 11:36:17,392 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=61.1 pTM=0.574 ipTM=0.685 tol=3.88 2024-07-10 11:36:25,260 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=61.1 pTM=0.573 ipTM=0.677 tol=3.55 2024-07-10 11:36:25,260 alphafold2_multimer_v3_model_2_seed_000 took 243.8s (30 recycles) 2024-07-10 11:36:33,352 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=58.1 pTM=0.551 ipTM=0.33 2024-07-10 11:36:41,247 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=58.3 pTM=0.556 ipTM=0.323 tol=13.2 2024-07-10 11:36:49,135 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=58.8 pTM=0.558 ipTM=0.233 tol=5.23 2024-07-10 11:36:57,004 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=58.8 pTM=0.572 ipTM=0.456 tol=6.55 2024-07-10 11:37:04,891 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=59.6 pTM=0.574 ipTM=0.658 tol=9.2 2024-07-10 11:37:12,803 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.1 pTM=0.571 ipTM=0.742 tol=10.2 2024-07-10 11:37:20,715 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.2 pTM=0.573 ipTM=0.74 tol=9.51 2024-07-10 11:37:28,623 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.6 pTM=0.575 ipTM=0.755 tol=8.12 2024-07-10 11:37:36,529 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.7 pTM=0.576 ipTM=0.76 tol=9.14 2024-07-10 11:37:44,447 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=61.1 pTM=0.575 ipTM=0.772 tol=7.17 2024-07-10 11:37:52,363 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.9 pTM=0.575 ipTM=0.77 tol=3.04 2024-07-10 11:38:00,281 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=61.1 pTM=0.576 ipTM=0.776 tol=2.6 2024-07-10 11:38:08,203 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=61 pTM=0.575 ipTM=0.769 tol=2.64 2024-07-10 11:38:16,108 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=61.1 pTM=0.576 ipTM=0.771 tol=4.18 2024-07-10 11:38:24,002 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61.2 pTM=0.576 ipTM=0.769 tol=6.79 2024-07-10 11:38:31,901 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61.2 pTM=0.576 ipTM=0.77 tol=6.88 2024-07-10 11:38:39,790 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61 pTM=0.576 ipTM=0.762 tol=11.8 2024-07-10 11:38:47,697 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=61.3 pTM=0.574 ipTM=0.771 tol=7.57 2024-07-10 11:38:55,605 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61.5 pTM=0.576 ipTM=0.771 tol=4.91 2024-07-10 11:39:03,508 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=61.3 pTM=0.575 ipTM=0.773 tol=3.31 2024-07-10 11:39:11,407 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=61.4 pTM=0.576 ipTM=0.773 tol=3.55 2024-07-10 11:39:19,301 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=61.3 pTM=0.574 ipTM=0.759 tol=3.36 2024-07-10 11:39:27,199 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=61.3 pTM=0.575 ipTM=0.773 tol=3.4 2024-07-10 11:39:35,091 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61.3 pTM=0.575 ipTM=0.756 tol=2.91 2024-07-10 11:39:42,991 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=61.4 pTM=0.576 ipTM=0.77 tol=1.99 2024-07-10 11:39:50,892 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=61.2 pTM=0.575 ipTM=0.759 tol=2.1 2024-07-10 11:39:58,793 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=61.2 pTM=0.575 ipTM=0.763 tol=2.79 2024-07-10 11:40:06,701 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=61.1 pTM=0.575 ipTM=0.764 tol=5.51 2024-07-10 11:40:14,595 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=61 pTM=0.576 ipTM=0.761 tol=4.65 2024-07-10 11:40:22,487 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=61 pTM=0.576 ipTM=0.764 tol=4.73 2024-07-10 11:40:30,378 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=61.2 pTM=0.576 ipTM=0.766 tol=4.6 2024-07-10 11:40:30,379 alphafold2_multimer_v3_model_3_seed_000 took 244.9s (30 recycles) 2024-07-10 11:40:38,467 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=57.3 pTM=0.559 ipTM=0.17 2024-07-10 11:40:46,371 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=57.9 pTM=0.562 ipTM=0.434 tol=16 2024-07-10 11:40:54,284 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=59.7 pTM=0.566 ipTM=0.718 tol=9.38 2024-07-10 11:41:02,186 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=59.9 pTM=0.569 ipTM=0.738 tol=10.2 2024-07-10 11:41:10,086 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=60.3 pTM=0.569 ipTM=0.75 tol=4.08 2024-07-10 11:41:17,979 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=60.2 pTM=0.571 ipTM=0.753 tol=5.4 2024-07-10 11:41:25,872 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=60.3 pTM=0.57 ipTM=0.761 tol=4.29 2024-07-10 11:41:33,761 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=60.3 pTM=0.571 ipTM=0.757 tol=2.92 2024-07-10 11:41:41,650 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=60.4 pTM=0.571 ipTM=0.765 tol=2.61 2024-07-10 11:41:49,551 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=61.1 pTM=0.575 ipTM=0.778 tol=2.8 2024-07-10 11:41:57,443 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=61.1 pTM=0.576 ipTM=0.786 tol=1.77 2024-07-10 11:42:05,336 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=61.2 pTM=0.577 ipTM=0.79 tol=4.22 2024-07-10 11:42:13,226 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=61.2 pTM=0.575 ipTM=0.79 tol=2.64 2024-07-10 11:42:21,117 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=61 pTM=0.577 ipTM=0.786 tol=6.26 2024-07-10 11:42:28,993 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=61.2 pTM=0.576 ipTM=0.788 tol=6.92 2024-07-10 11:42:36,887 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=61.2 pTM=0.577 ipTM=0.788 tol=3.79 2024-07-10 11:42:44,774 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=61.2 pTM=0.578 ipTM=0.794 tol=4.26 2024-07-10 11:42:52,664 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=61.2 pTM=0.575 ipTM=0.786 tol=3.74 2024-07-10 11:43:00,561 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=61.3 pTM=0.576 ipTM=0.798 tol=4.5 2024-07-10 11:43:08,450 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=61.2 pTM=0.577 ipTM=0.796 tol=2.81 2024-07-10 11:43:16,340 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=61.2 pTM=0.576 ipTM=0.802 tol=3.09 2024-07-10 11:43:24,230 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=61.1 pTM=0.574 ipTM=0.79 tol=2.22 2024-07-10 11:43:32,123 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=61.1 pTM=0.576 ipTM=0.798 tol=8.04 2024-07-10 11:43:40,003 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=61 pTM=0.575 ipTM=0.777 tol=6.68 2024-07-10 11:43:47,898 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=61.2 pTM=0.576 ipTM=0.798 tol=3.77 2024-07-10 11:43:55,792 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=61.1 pTM=0.575 ipTM=0.788 tol=3.72 2024-07-10 11:44:03,678 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=61.1 pTM=0.576 ipTM=0.797 tol=5.07 2024-07-10 11:44:11,570 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=61.3 pTM=0.575 ipTM=0.793 tol=8.46 2024-07-10 11:44:19,461 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=61.2 pTM=0.577 ipTM=0.794 tol=11.4 2024-07-10 11:44:27,357 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=61.3 pTM=0.576 ipTM=0.793 tol=4.28 2024-07-10 11:44:35,251 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=61.2 pTM=0.577 ipTM=0.799 tol=1.92 2024-07-10 11:44:35,251 alphafold2_multimer_v3_model_4_seed_000 took 244.7s (30 recycles) 2024-07-10 11:44:43,334 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=56.5 pTM=0.547 ipTM=0.2 2024-07-10 11:44:51,233 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=58.1 pTM=0.561 ipTM=0.193 tol=13.9 2024-07-10 11:44:59,135 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.9 pTM=0.566 ipTM=0.564 tol=8.44 2024-07-10 11:45:07,040 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=59.7 pTM=0.57 ipTM=0.651 tol=6.43 2024-07-10 11:45:14,955 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=59.9 pTM=0.569 ipTM=0.695 tol=6.5 2024-07-10 11:45:22,870 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=60.1 pTM=0.568 ipTM=0.714 tol=7.69 2024-07-10 11:45:30,780 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=60.4 pTM=0.57 ipTM=0.738 tol=5.93 2024-07-10 11:45:38,691 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.5 pTM=0.571 ipTM=0.734 tol=5.41 2024-07-10 11:45:46,607 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.4 pTM=0.572 ipTM=0.749 tol=3.5 2024-07-10 11:45:54,536 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=60.5 pTM=0.572 ipTM=0.75 tol=5.5 2024-07-10 11:46:02,463 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=60.6 pTM=0.572 ipTM=0.749 tol=10.9 2024-07-10 11:46:10,377 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60.8 pTM=0.573 ipTM=0.754 tol=5.92 2024-07-10 11:46:18,294 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=60.8 pTM=0.572 ipTM=0.754 tol=8.62 2024-07-10 11:46:26,205 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=60.7 pTM=0.573 ipTM=0.745 tol=6.96 2024-07-10 11:46:34,123 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=60.8 pTM=0.574 ipTM=0.749 tol=6.84 2024-07-10 11:46:42,044 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=60.9 pTM=0.572 ipTM=0.752 tol=4.55 2024-07-10 11:46:49,950 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=60.6 pTM=0.573 ipTM=0.743 tol=3.64 2024-07-10 11:46:57,855 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=60.7 pTM=0.571 ipTM=0.752 tol=3.81 2024-07-10 11:47:05,766 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=60.8 pTM=0.572 ipTM=0.752 tol=3.38 2024-07-10 11:47:13,675 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=60.7 pTM=0.573 ipTM=0.755 tol=1.41 2024-07-10 11:47:21,585 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=60.9 pTM=0.573 ipTM=0.748 tol=2.46 2024-07-10 11:47:29,489 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=60.7 pTM=0.572 ipTM=0.739 tol=2.14 2024-07-10 11:47:37,397 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=60.9 pTM=0.572 ipTM=0.741 tol=3.64 2024-07-10 11:47:45,307 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=61 pTM=0.573 ipTM=0.736 tol=2.39 2024-07-10 11:47:53,211 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.3 pTM=0.574 ipTM=0.748 tol=3.29 2024-07-10 11:48:01,120 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=61.2 pTM=0.573 ipTM=0.745 tol=3.61 2024-07-10 11:48:09,023 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=61 pTM=0.573 ipTM=0.741 tol=2.28 2024-07-10 11:48:16,931 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=61.1 pTM=0.573 ipTM=0.748 tol=3.24 2024-07-10 11:48:24,835 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=61.3 pTM=0.573 ipTM=0.749 tol=3.08 2024-07-10 11:48:32,740 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=61.4 pTM=0.574 ipTM=0.754 tol=2.5 2024-07-10 11:48:40,643 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=61.2 pTM=0.573 ipTM=0.752 tol=1.63 2024-07-10 11:48:40,644 alphafold2_multimer_v3_model_5_seed_000 took 245.2s (30 recycles) 2024-07-10 11:48:40,845 reranking models by 'multimer' metric 2024-07-10 11:48:43,741 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-10 11:49:15,799 Relaxation took 35.0s 2024-07-10 11:49:15,799 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=61.2 pTM=0.577 ipTM=0.799 2024-07-10 11:49:43,547 Relaxation took 27.7s 2024-07-10 11:49:43,547 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=61.2 pTM=0.576 ipTM=0.766 2024-07-10 11:50:11,967 Relaxation took 28.4s 2024-07-10 11:50:11,967 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=61.2 pTM=0.573 ipTM=0.752 2024-07-10 11:50:43,431 Relaxation took 31.5s 2024-07-10 11:50:43,431 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=61.1 pTM=0.573 ipTM=0.677 2024-07-10 11:51:17,733 Relaxation took 34.3s 2024-07-10 11:51:17,733 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.1 pTM=0.575 ipTM=0.24 2024-07-10 11:51:18,755 Done