2024-07-10 11:51:53,840 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 11:51:54,150 Running on GPU
2024-07-10 11:51:57,920 Found 6 citations for tools or databases
2024-07-10 11:51:57,920 Query 1/1: GNA1_HEXB (length 740)
2024-07-10 11:51:58,385 Sleeping for 9s. Reason: PENDING
2024-07-10 11:52:07,800 Sleeping for 6s. Reason: RUNNING
2024-07-10 11:52:14,219 Sleeping for 6s. Reason: RUNNING
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2024-07-10 11:52:58,525 Sleeping for 9s. Reason: RUNNING
2024-07-10 11:53:07,951 Sleeping for 10s. Reason: RUNNING
2024-07-10 11:53:18,365 Sleeping for 10s. Reason: RUNNING
2024-07-10 11:53:28,798 Sleeping for 7s. Reason: RUNNING
2024-07-10 11:53:36,220 Sleeping for 9s. Reason: RUNNING
2024-07-10 11:53:45,942 Sleeping for 6s. Reason: RUNNING
2024-07-10 11:53:52,369 Sleeping for 6s. Reason: RUNNING
2024-07-10 11:53:58,795 Sleeping for 10s. Reason: RUNNING
2024-07-10 11:54:09,238 Sleeping for 10s. Reason: RUNNING
2024-07-10 11:54:55,322 Sleeping for 10s. Reason: PENDING
2024-07-10 11:55:05,785 Sleeping for 8s. Reason: RUNNING
2024-07-10 11:55:14,206 Sleeping for 9s. Reason: RUNNING
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2024-07-10 11:55:41,484 Sleeping for 7s. Reason: RUNNING
2024-07-10 11:55:48,908 Sleeping for 5s. Reason: RUNNING
2024-07-10 11:55:55,492 Sleeping for 6s. Reason: RUNNING
2024-07-10 11:56:01,906 Sleeping for 7s. Reason: RUNNING
2024-07-10 11:56:09,342 Sleeping for 8s. Reason: RUNNING
2024-07-10 11:56:17,770 Sleeping for 8s. Reason: RUNNING
2024-07-10 11:56:29,807 Setting max_seq=508, max_extra_seq=2048
2024-07-10 11:58:49,082 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=85 pTM=0.706 ipTM=0.197
2024-07-10 11:59:00,444 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=86.5 pTM=0.719 ipTM=0.222 tol=4.36
2024-07-10 11:59:11,817 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=87.5 pTM=0.721 ipTM=0.235 tol=2.76
2024-07-10 11:59:23,198 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=87.2 pTM=0.718 ipTM=0.231 tol=2.43
2024-07-10 11:59:34,616 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=86.8 pTM=0.716 ipTM=0.222 tol=0.438
2024-07-10 11:59:34,617 alphafold2_multimer_v3_model_1_seed_000 took 179.3s (4 recycles)
2024-07-10 11:59:46,337 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=85.3 pTM=0.705 ipTM=0.213
2024-07-10 11:59:57,758 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=87.6 pTM=0.712 ipTM=0.195 tol=7.18
2024-07-10 12:00:09,177 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=88.2 pTM=0.706 ipTM=0.167 tol=3.63
2024-07-10 12:00:20,613 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=88.3 pTM=0.697 ipTM=0.13 tol=2.96
2024-07-10 12:00:32,051 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=88.1 pTM=0.698 ipTM=0.156 tol=12.1
2024-07-10 12:00:43,478 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=88.6 pTM=0.706 ipTM=0.192 tol=2.04
2024-07-10 12:00:54,910 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=88.7 pTM=0.705 ipTM=0.189 tol=0.937
2024-07-10 12:01:06,337 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=88.8 pTM=0.708 ipTM=0.204 tol=0.599
2024-07-10 12:01:17,769 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=88.8 pTM=0.708 ipTM=0.198 tol=0.567
2024-07-10 12:01:29,195 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=88.9 pTM=0.708 ipTM=0.2 tol=0.411
2024-07-10 12:01:29,196 alphafold2_multimer_v3_model_2_seed_000 took 114.2s (9 recycles)
2024-07-10 12:01:40,964 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=85.6 pTM=0.708 ipTM=0.242
2024-07-10 12:01:52,430 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=87.9 pTM=0.715 ipTM=0.237 tol=6.94
2024-07-10 12:02:03,885 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=87.5 pTM=0.721 ipTM=0.246 tol=10.5
2024-07-10 12:02:15,354 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=87.9 pTM=0.72 ipTM=0.253 tol=6.16
2024-07-10 12:02:26,831 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.5 pTM=0.72 ipTM=0.242 tol=4.27
2024-07-10 12:02:38,288 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=88 pTM=0.725 ipTM=0.265 tol=4.11
2024-07-10 12:02:49,741 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=87.5 pTM=0.729 ipTM=0.274 tol=4.75
2024-07-10 12:03:01,189 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=88.1 pTM=0.729 ipTM=0.285 tol=4.59
2024-07-10 12:03:12,628 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=87.6 pTM=0.726 ipTM=0.264 tol=4.14
2024-07-10 12:03:24,067 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=88.1 pTM=0.731 ipTM=0.292 tol=3.93
2024-07-10 12:03:35,520 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=87.6 pTM=0.725 ipTM=0.264 tol=3.5
2024-07-10 12:03:46,967 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=87.8 pTM=0.73 ipTM=0.282 tol=2.67
2024-07-10 12:03:58,415 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=87.5 pTM=0.723 ipTM=0.253 tol=2.23
2024-07-10 12:04:09,863 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=87.8 pTM=0.729 ipTM=0.278 tol=2.07
2024-07-10 12:04:21,313 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=87.4 pTM=0.722 ipTM=0.248 tol=2.1
2024-07-10 12:04:32,760 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=87.7 pTM=0.729 ipTM=0.278 tol=1.97
2024-07-10 12:04:44,207 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=87.4 pTM=0.721 ipTM=0.245 tol=1.66
2024-07-10 12:04:55,656 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=87.6 pTM=0.726 ipTM=0.264 tol=1.76
2024-07-10 12:05:07,143 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=87.6 pTM=0.722 ipTM=0.245 tol=1.55
2024-07-10 12:05:18,609 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=87.6 pTM=0.719 ipTM=0.235 tol=1.79
2024-07-10 12:05:30,061 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=87.4 pTM=0.722 ipTM=0.241 tol=2.51
2024-07-10 12:05:41,512 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=87.5 pTM=0.719 ipTM=0.238 tol=2.5
2024-07-10 12:05:52,966 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=87.6 pTM=0.728 ipTM=0.265 tol=2.71
2024-07-10 12:06:04,409 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=87.4 pTM=0.721 ipTM=0.25 tol=3.9
2024-07-10 12:06:15,864 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=87.7 pTM=0.731 ipTM=0.285 tol=4.05
2024-07-10 12:06:27,311 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=87.5 pTM=0.719 ipTM=0.239 tol=3.32
2024-07-10 12:06:38,766 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=87.6 pTM=0.731 ipTM=0.283 tol=3.36
2024-07-10 12:06:50,207 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=87.3 pTM=0.721 ipTM=0.249 tol=3.27
2024-07-10 12:07:01,666 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=87.6 pTM=0.732 ipTM=0.286 tol=3.03
2024-07-10 12:07:13,114 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=87.3 pTM=0.724 ipTM=0.258 tol=3.13
2024-07-10 12:07:24,566 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=87.8 pTM=0.735 ipTM=0.299 tol=3.25
2024-07-10 12:07:24,567 alphafold2_multimer_v3_model_3_seed_000 took 355.0s (30 recycles)
2024-07-10 12:07:36,376 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.7 pTM=0.704 ipTM=0.21
2024-07-10 12:07:47,886 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=86.9 pTM=0.703 ipTM=0.169 tol=8.31
2024-07-10 12:07:59,387 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=86.9 pTM=0.704 ipTM=0.182 tol=4.89
2024-07-10 12:08:10,875 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=86.4 pTM=0.706 ipTM=0.186 tol=3.7
2024-07-10 12:08:22,363 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=86.3 pTM=0.706 ipTM=0.189 tol=1.09
2024-07-10 12:08:33,851 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=86.7 pTM=0.703 ipTM=0.17 tol=1.29
2024-07-10 12:08:45,331 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=86.6 pTM=0.699 ipTM=0.158 tol=1.93
2024-07-10 12:08:56,816 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=87.1 pTM=0.694 ipTM=0.132 tol=2.31
2024-07-10 12:09:08,299 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=87 pTM=0.693 ipTM=0.125 tol=3.06
2024-07-10 12:09:19,783 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=86.4 pTM=0.706 ipTM=0.199 tol=9.52
2024-07-10 12:09:31,265 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=88.1 pTM=0.706 ipTM=0.208 tol=7.04
2024-07-10 12:09:42,756 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=86.8 pTM=0.707 ipTM=0.2 tol=6.06
2024-07-10 12:09:54,250 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=87.1 pTM=0.707 ipTM=0.201 tol=3.47
2024-07-10 12:10:05,743 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=86.7 pTM=0.708 ipTM=0.205 tol=1.94
2024-07-10 12:10:17,231 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=87.1 pTM=0.707 ipTM=0.204 tol=1.53
2024-07-10 12:10:28,726 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=86.8 pTM=0.709 ipTM=0.211 tol=2.82
2024-07-10 12:10:40,233 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=86.9 pTM=0.708 ipTM=0.204 tol=2.39
2024-07-10 12:10:51,731 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=86.7 pTM=0.709 ipTM=0.21 tol=2
2024-07-10 12:11:03,228 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=86.9 pTM=0.708 ipTM=0.203 tol=2.15
2024-07-10 12:11:14,708 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=86.8 pTM=0.708 ipTM=0.208 tol=1.56
2024-07-10 12:11:26,190 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=87 pTM=0.707 ipTM=0.198 tol=1.67
2024-07-10 12:11:37,671 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=86.7 pTM=0.709 ipTM=0.211 tol=1.35
2024-07-10 12:11:49,163 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=86.9 pTM=0.708 ipTM=0.208 tol=1.13
2024-07-10 12:12:00,656 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=86.8 pTM=0.707 ipTM=0.202 tol=0.781
2024-07-10 12:12:12,142 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=86.8 pTM=0.708 ipTM=0.204 tol=0.515
2024-07-10 12:12:23,634 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=86.8 pTM=0.708 ipTM=0.208 tol=0.999
2024-07-10 12:12:35,124 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=86.6 pTM=0.708 ipTM=0.203 tol=0.878
2024-07-10 12:12:46,605 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=86.6 pTM=0.707 ipTM=0.203 tol=0.953
2024-07-10 12:12:58,102 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=86.7 pTM=0.708 ipTM=0.203 tol=1.11
2024-07-10 12:13:09,590 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=86.6 pTM=0.708 ipTM=0.205 tol=0.885
2024-07-10 12:13:21,082 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=86.6 pTM=0.707 ipTM=0.204 tol=1.09
2024-07-10 12:13:21,083 alphafold2_multimer_v3_model_4_seed_000 took 356.2s (30 recycles)
2024-07-10 12:13:32,855 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=83.8 pTM=0.693 ipTM=0.158
2024-07-10 12:13:44,373 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=86 pTM=0.695 ipTM=0.144 tol=9
2024-07-10 12:13:55,877 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=86.7 pTM=0.691 ipTM=0.13 tol=6.57
2024-07-10 12:14:07,394 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=87.1 pTM=0.689 ipTM=0.121 tol=9.49
2024-07-10 12:14:18,897 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=87 pTM=0.7 ipTM=0.158 tol=6.21
2024-07-10 12:14:30,402 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=87.2 pTM=0.702 ipTM=0.169 tol=2.92
2024-07-10 12:14:41,906 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=87.3 pTM=0.702 ipTM=0.168 tol=1.55
2024-07-10 12:14:53,406 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=87.4 pTM=0.704 ipTM=0.173 tol=1.62
2024-07-10 12:15:04,914 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=87.4 pTM=0.703 ipTM=0.169 tol=2.33
2024-07-10 12:15:16,403 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=87.2 pTM=0.704 ipTM=0.175 tol=2.69
2024-07-10 12:15:27,901 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=87.6 pTM=0.704 ipTM=0.173 tol=4.73
2024-07-10 12:15:39,390 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=87.2 pTM=0.711 ipTM=0.205 tol=6.56
2024-07-10 12:15:50,890 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=88 pTM=0.708 ipTM=0.193 tol=5.61
2024-07-10 12:16:02,379 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=87.1 pTM=0.71 ipTM=0.201 tol=5.94
2024-07-10 12:16:13,891 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=88 pTM=0.708 ipTM=0.199 tol=6.07
2024-07-10 12:16:25,374 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=87.2 pTM=0.71 ipTM=0.201 tol=5.73
2024-07-10 12:16:36,855 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=87.8 pTM=0.708 ipTM=0.198 tol=5.23
2024-07-10 12:16:48,320 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=87.2 pTM=0.711 ipTM=0.205 tol=5.66
2024-07-10 12:16:59,804 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=88 pTM=0.709 ipTM=0.2 tol=5.98
2024-07-10 12:17:11,282 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=87.3 pTM=0.71 ipTM=0.2 tol=5.83
2024-07-10 12:17:22,763 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=88 pTM=0.709 ipTM=0.197 tol=6.23
2024-07-10 12:17:34,226 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=87.2 pTM=0.71 ipTM=0.206 tol=6.2
2024-07-10 12:17:45,707 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=87.8 pTM=0.71 ipTM=0.201 tol=6.07
2024-07-10 12:17:57,186 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=87.2 pTM=0.714 ipTM=0.218 tol=6.59
2024-07-10 12:18:08,669 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=88.1 pTM=0.714 ipTM=0.224 tol=6.67
2024-07-10 12:18:20,139 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=87.2 pTM=0.713 ipTM=0.213 tol=6.3
2024-07-10 12:18:31,624 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=87.9 pTM=0.708 ipTM=0.194 tol=6.51
2024-07-10 12:18:43,082 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=87.1 pTM=0.709 ipTM=0.203 tol=6.34
2024-07-10 12:18:54,607 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=87.9 pTM=0.711 ipTM=0.212 tol=6.43
2024-07-10 12:19:06,109 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=87.1 pTM=0.709 ipTM=0.203 tol=6.64
2024-07-10 12:19:17,596 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=87.9 pTM=0.707 ipTM=0.188 tol=6.68
2024-07-10 12:19:17,596 alphafold2_multimer_v3_model_5_seed_000 took 356.2s (30 recycles)
2024-07-10 12:19:17,939 reranking models by 'multimer' metric
2024-07-10 12:19:18,961 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 12:19:40,494 Relaxation took 22.6s
2024-07-10 12:19:40,495 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=87.8 pTM=0.735 ipTM=0.299
2024-07-10 12:19:57,794 Relaxation took 17.3s
2024-07-10 12:19:57,794 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=86.8 pTM=0.716 ipTM=0.222
2024-07-10 12:20:39,227 Relaxation took 41.4s
2024-07-10 12:20:39,227 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=86.6 pTM=0.707 ipTM=0.204
2024-07-10 12:20:58,498 Relaxation took 19.3s
2024-07-10 12:20:58,498 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=88.9 pTM=0.708 ipTM=0.2
2024-07-10 12:21:16,398 Relaxation took 17.9s
2024-07-10 12:21:16,398 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=87.9 pTM=0.707 ipTM=0.188
2024-07-10 12:21:17,753 Done