2024-07-10 12:25:39,781 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 12:25:40,112 Running on GPU
2024-07-10 12:25:43,898 Found 6 citations for tools or databases
2024-07-10 12:25:43,898 Query 1/1: GON1_UMPS (length 572)
2024-07-10 12:25:44,378 Sleeping for 9s. Reason: PENDING
2024-07-10 12:25:53,819 Sleeping for 6s. Reason: RUNNING
2024-07-10 12:26:00,588 Sleeping for 7s. Reason: RUNNING
2024-07-10 12:26:08,019 Sleeping for 6s. Reason: RUNNING
2024-07-10 12:26:14,455 Sleeping for 9s. Reason: RUNNING
2024-07-10 12:26:23,905 Sleeping for 9s. Reason: RUNNING
2024-07-10 12:26:33,337 Sleeping for 6s. Reason: RUNNING
2024-07-10 12:26:39,762 Sleeping for 7s. Reason: RUNNING
2024-07-10 12:26:47,345 Sleeping for 6s. Reason: RUNNING
2024-07-10 12:27:07,255 Sleeping for 6s. Reason: PENDING
2024-07-10 12:27:13,682 Sleeping for 6s. Reason: RUNNING
2024-07-10 12:27:21,261 Sleeping for 5s. Reason: RUNNING
2024-07-10 12:27:26,683 Sleeping for 10s. Reason: RUNNING
2024-07-10 12:27:37,098 Sleeping for 8s. Reason: RUNNING
2024-07-10 12:27:47,835 Setting max_seq=508, max_extra_seq=2048
2024-07-10 12:30:06,240 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.5 pTM=0.529 ipTM=0.103
2024-07-10 12:30:13,289 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.3 pTM=0.536 ipTM=0.109 tol=3.08
2024-07-10 12:30:20,326 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.6 pTM=0.527 ipTM=0.12 tol=3.92
2024-07-10 12:30:27,372 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.6 pTM=0.526 ipTM=0.133 tol=2.34
2024-07-10 12:30:34,435 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.6 pTM=0.526 ipTM=0.142 tol=1.35
2024-07-10 12:30:41,497 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.3 pTM=0.522 ipTM=0.152 tol=1.01
2024-07-10 12:30:48,564 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.3 pTM=0.521 ipTM=0.154 tol=0.667
2024-07-10 12:30:55,639 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.4 pTM=0.524 ipTM=0.157 tol=0.624
2024-07-10 12:31:02,708 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.3 pTM=0.526 ipTM=0.161 tol=0.511
2024-07-10 12:31:09,778 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.5 pTM=0.528 ipTM=0.161 tol=0.495
2024-07-10 12:31:09,779 alphafold2_multimer_v3_model_1_seed_000 took 196.8s (9 recycles)
2024-07-10 12:31:17,085 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.9 pTM=0.53 ipTM=0.114
2024-07-10 12:31:24,189 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.2 pTM=0.536 ipTM=0.125 tol=3.57
2024-07-10 12:31:31,273 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.8 pTM=0.534 ipTM=0.143 tol=5.71
2024-07-10 12:31:38,349 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.9 pTM=0.534 ipTM=0.162 tol=2.84
2024-07-10 12:31:45,418 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.1 pTM=0.535 ipTM=0.168 tol=0.864
2024-07-10 12:31:52,490 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.1 pTM=0.535 ipTM=0.172 tol=0.521
2024-07-10 12:31:59,558 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.1 pTM=0.535 ipTM=0.17 tol=0.425
2024-07-10 12:31:59,559 alphafold2_multimer_v3_model_2_seed_000 took 49.6s (6 recycles)
2024-07-10 12:32:06,866 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.2 pTM=0.513 ipTM=0.0962
2024-07-10 12:32:13,961 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.6 pTM=0.524 ipTM=0.112 tol=7.82
2024-07-10 12:32:21,033 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.5 pTM=0.515 ipTM=0.115 tol=4.46
2024-07-10 12:32:28,108 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.3 pTM=0.518 ipTM=0.126 tol=2.71
2024-07-10 12:32:35,179 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.4 pTM=0.516 ipTM=0.138 tol=2.03
2024-07-10 12:32:42,262 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.2 pTM=0.517 ipTM=0.141 tol=0.953
2024-07-10 12:32:49,340 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.4 pTM=0.516 ipTM=0.141 tol=1.24
2024-07-10 12:32:56,430 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.2 pTM=0.518 ipTM=0.143 tol=1.68
2024-07-10 12:33:03,513 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.2 pTM=0.518 ipTM=0.146 tol=0.88
2024-07-10 12:33:10,604 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.5 pTM=0.519 ipTM=0.144 tol=3.72
2024-07-10 12:33:17,690 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.4 pTM=0.514 ipTM=0.144 tol=1.53
2024-07-10 12:33:24,779 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.5 pTM=0.518 ipTM=0.141 tol=0.447
2024-07-10 12:33:24,779 alphafold2_multimer_v3_model_3_seed_000 took 85.0s (11 recycles)
2024-07-10 12:33:32,127 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.4 pTM=0.511 ipTM=0.103
2024-07-10 12:33:39,251 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.8 pTM=0.522 ipTM=0.105 tol=6.57
2024-07-10 12:33:46,338 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.3 pTM=0.516 ipTM=0.103 tol=3.85
2024-07-10 12:33:53,417 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.3 pTM=0.516 ipTM=0.112 tol=3.73
2024-07-10 12:34:00,490 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.5 pTM=0.519 ipTM=0.124 tol=1.88
2024-07-10 12:34:07,562 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.3 pTM=0.52 ipTM=0.134 tol=1.36
2024-07-10 12:34:14,621 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.3 pTM=0.52 ipTM=0.132 tol=0.771
2024-07-10 12:34:21,687 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.3 pTM=0.523 ipTM=0.133 tol=0.584
2024-07-10 12:34:28,740 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.1 pTM=0.521 ipTM=0.135 tol=0.56
2024-07-10 12:34:35,826 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.4 pTM=0.525 ipTM=0.134 tol=0.671
2024-07-10 12:34:42,911 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.3 pTM=0.521 ipTM=0.135 tol=0.553
2024-07-10 12:34:49,983 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.2 pTM=0.521 ipTM=0.137 tol=0.548
2024-07-10 12:34:57,042 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79 pTM=0.522 ipTM=0.138 tol=0.569
2024-07-10 12:35:04,098 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.2 pTM=0.524 ipTM=0.132 tol=0.589
2024-07-10 12:35:11,158 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.2 pTM=0.52 ipTM=0.132 tol=0.494
2024-07-10 12:35:11,159 alphafold2_multimer_v3_model_4_seed_000 took 106.2s (14 recycles)
2024-07-10 12:35:18,503 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79.1 pTM=0.514 ipTM=0.0975
2024-07-10 12:35:25,627 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.7 pTM=0.512 ipTM=0.119 tol=5.42
2024-07-10 12:35:32,720 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.7 pTM=0.511 ipTM=0.123 tol=1.83
2024-07-10 12:35:39,825 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80 pTM=0.512 ipTM=0.126 tol=1.34
2024-07-10 12:35:46,924 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.7 pTM=0.512 ipTM=0.13 tol=0.839
2024-07-10 12:35:54,018 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.8 pTM=0.51 ipTM=0.132 tol=0.289
2024-07-10 12:35:54,019 alphafold2_multimer_v3_model_5_seed_000 took 42.6s (5 recycles)
2024-07-10 12:35:54,237 reranking models by 'multimer' metric
2024-07-10 12:35:54,974 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 12:36:24,672 Relaxation took 30.4s
2024-07-10 12:36:24,673 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.1 pTM=0.535 ipTM=0.17
2024-07-10 12:36:37,431 Relaxation took 12.8s
2024-07-10 12:36:37,432 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.5 pTM=0.528 ipTM=0.161
2024-07-10 12:36:59,435 Relaxation took 22.0s
2024-07-10 12:36:59,435 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.5 pTM=0.518 ipTM=0.141
2024-07-10 12:37:11,646 Relaxation took 12.2s
2024-07-10 12:37:11,646 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.2 pTM=0.52 ipTM=0.132
2024-07-10 12:37:40,328 Relaxation took 28.7s
2024-07-10 12:37:40,328 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.8 pTM=0.51 ipTM=0.132
2024-07-10 12:37:41,484 Done