2024-07-10 13:37:35,399 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 13:37:35,728 Running on GPU
2024-07-10 13:37:39,651 Found 6 citations for tools or databases
2024-07-10 13:37:39,651 Query 1/1: GRAK_SERC5 (length 687)
2024-07-10 13:37:40,147 Sleeping for 7s. Reason: PENDING
2024-07-10 13:37:48,695 Sleeping for 8s. Reason: RUNNING
2024-07-10 13:37:57,646 Sleeping for 7s. Reason: RUNNING
2024-07-10 13:38:05,059 Sleeping for 6s. Reason: RUNNING
2024-07-10 13:38:11,514 Sleeping for 8s. Reason: RUNNING
2024-07-10 13:38:19,942 Sleeping for 8s. Reason: RUNNING
2024-07-10 13:38:28,366 Sleeping for 9s. Reason: RUNNING
2024-07-10 13:38:38,418 Sleeping for 6s. Reason: RUNNING
2024-07-10 13:38:44,859 Sleeping for 5s. Reason: RUNNING
2024-07-10 13:38:50,282 Sleeping for 7s. Reason: RUNNING
2024-07-10 13:38:57,710 Sleeping for 8s. Reason: RUNNING
2024-07-10 13:39:23,409 Sleeping for 10s. Reason: PENDING
2024-07-10 13:39:34,370 Sleeping for 5s. Reason: RUNNING
2024-07-10 13:39:39,790 Sleeping for 8s. Reason: RUNNING
2024-07-10 13:39:48,217 Sleeping for 7s. Reason: RUNNING
2024-07-10 13:39:56,411 Sleeping for 6s. Reason: RUNNING
2024-07-10 13:40:02,835 Sleeping for 9s. Reason: RUNNING
2024-07-10 13:40:12,263 Sleeping for 9s. Reason: RUNNING
2024-07-10 13:40:24,398 Setting max_seq=508, max_extra_seq=2048
2024-07-10 13:43:15,111 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=72.9 pTM=0.538 ipTM=0.155
2024-07-10 13:43:24,420 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.1 pTM=0.557 ipTM=0.186 tol=1.74
2024-07-10 13:43:33,740 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.1 pTM=0.565 ipTM=0.184 tol=1.62
2024-07-10 13:43:43,065 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.9 pTM=0.562 ipTM=0.183 tol=0.805
2024-07-10 13:43:52,409 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75 pTM=0.561 ipTM=0.181 tol=0.396
2024-07-10 13:43:52,410 alphafold2_multimer_v3_model_1_seed_000 took 202.7s (4 recycles)
2024-07-10 13:44:02,033 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.6 pTM=0.569 ipTM=0.229
2024-07-10 13:44:11,386 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.5 pTM=0.574 ipTM=0.217 tol=3.38
2024-07-10 13:44:20,742 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.6 pTM=0.567 ipTM=0.205 tol=0.734
2024-07-10 13:44:30,105 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74.7 pTM=0.559 ipTM=0.192 tol=0.696
2024-07-10 13:44:39,481 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.8 pTM=0.564 ipTM=0.204 tol=0.675
2024-07-10 13:44:48,858 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75 pTM=0.567 ipTM=0.209 tol=0.539
2024-07-10 13:44:58,238 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.8 pTM=0.568 ipTM=0.22 tol=0.542
2024-07-10 13:45:07,628 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.3 pTM=0.569 ipTM=0.213 tol=0.267
2024-07-10 13:45:07,629 alphafold2_multimer_v3_model_2_seed_000 took 74.9s (7 recycles)
2024-07-10 13:45:17,320 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.2 pTM=0.525 ipTM=0.155
2024-07-10 13:45:26,718 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.4 pTM=0.524 ipTM=0.152 tol=5.67
2024-07-10 13:45:36,125 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.2 pTM=0.538 ipTM=0.216 tol=1.88
2024-07-10 13:45:45,538 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.9 pTM=0.527 ipTM=0.169 tol=0.923
2024-07-10 13:45:54,957 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=72.8 pTM=0.524 ipTM=0.151 tol=1.38
2024-07-10 13:46:04,384 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.7 pTM=0.525 ipTM=0.153 tol=0.675
2024-07-10 13:46:13,801 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.6 pTM=0.523 ipTM=0.154 tol=0.313
2024-07-10 13:46:13,802 alphafold2_multimer_v3_model_3_seed_000 took 65.9s (6 recycles)
2024-07-10 13:46:23,521 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73 pTM=0.598 ipTM=0.322
2024-07-10 13:46:32,953 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.2 pTM=0.567 ipTM=0.2 tol=2.23
2024-07-10 13:46:42,391 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.3 pTM=0.565 ipTM=0.197 tol=1.01
2024-07-10 13:46:51,834 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.4 pTM=0.558 ipTM=0.186 tol=1.04
2024-07-10 13:47:01,277 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=74.5 pTM=0.56 ipTM=0.193 tol=0.99
2024-07-10 13:47:10,724 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=74.7 pTM=0.565 ipTM=0.202 tol=0.744
2024-07-10 13:47:20,166 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=74.6 pTM=0.563 ipTM=0.2 tol=0.443
2024-07-10 13:47:20,166 alphafold2_multimer_v3_model_4_seed_000 took 66.1s (6 recycles)
2024-07-10 13:47:29,882 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.2 pTM=0.558 ipTM=0.224
2024-07-10 13:47:39,314 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.8 pTM=0.551 ipTM=0.218 tol=1.58
2024-07-10 13:47:48,756 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.8 pTM=0.573 ipTM=0.428 tol=1.06
2024-07-10 13:47:58,181 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.3 pTM=0.63 ipTM=0.519 tol=1.92
2024-07-10 13:48:07,600 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=73.9 pTM=0.604 ipTM=0.396 tol=0.993
2024-07-10 13:48:17,023 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=74.3 pTM=0.616 ipTM=0.47 tol=0.991
2024-07-10 13:48:26,439 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=73.9 pTM=0.604 ipTM=0.449 tol=0.799
2024-07-10 13:48:35,880 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=74.9 pTM=0.646 ipTM=0.554 tol=0.784
2024-07-10 13:48:45,303 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=74.7 pTM=0.629 ipTM=0.508 tol=0.673
2024-07-10 13:48:54,727 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=75 pTM=0.646 ipTM=0.552 tol=0.699
2024-07-10 13:49:04,149 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=74.7 pTM=0.631 ipTM=0.5 tol=0.684
2024-07-10 13:49:13,567 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=74.8 pTM=0.647 ipTM=0.557 tol=0.916
2024-07-10 13:49:22,981 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=74.3 pTM=0.631 ipTM=0.496 tol=0.769
2024-07-10 13:49:32,396 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=74.7 pTM=0.648 ipTM=0.541 tol=0.813
2024-07-10 13:49:41,812 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=74.4 pTM=0.629 ipTM=0.492 tol=0.916
2024-07-10 13:49:51,225 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=74.8 pTM=0.65 ipTM=0.544 tol=0.952
2024-07-10 13:50:00,642 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=74.6 pTM=0.637 ipTM=0.513 tol=0.516
2024-07-10 13:50:10,060 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=74.8 pTM=0.646 ipTM=0.531 tol=0.651
2024-07-10 13:50:19,480 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=74.4 pTM=0.627 ipTM=0.483 tol=0.625
2024-07-10 13:50:28,893 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=74.8 pTM=0.646 ipTM=0.519 tol=0.654
2024-07-10 13:50:38,311 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=74.3 pTM=0.626 ipTM=0.486 tol=0.656
2024-07-10 13:50:47,723 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=74.2 pTM=0.631 ipTM=0.482 tol=0.623
2024-07-10 13:50:57,139 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=73.9 pTM=0.614 ipTM=0.441 tol=0.511
2024-07-10 13:51:06,546 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=74 pTM=0.619 ipTM=0.461 tol=0.408
2024-07-10 13:51:06,547 alphafold2_multimer_v3_model_5_seed_000 took 226.1s (23 recycles)
2024-07-10 13:51:06,850 reranking models by 'multimer' metric
2024-07-10 13:51:07,897 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 13:51:52,265 Relaxation took 45.4s
2024-07-10 13:51:52,266 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=74 pTM=0.619 ipTM=0.461
2024-07-10 13:52:30,404 Relaxation took 38.1s
2024-07-10 13:52:30,404 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.3 pTM=0.569 ipTM=0.213
2024-07-10 13:53:07,792 Relaxation took 37.4s
2024-07-10 13:53:07,792 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=74.6 pTM=0.563 ipTM=0.2
2024-07-10 13:53:28,583 Relaxation took 20.8s
2024-07-10 13:53:28,583 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75 pTM=0.561 ipTM=0.181
2024-07-10 13:54:20,563 Relaxation took 52.0s
2024-07-10 13:54:20,564 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.6 pTM=0.523 ipTM=0.154
2024-07-10 13:54:22,124 Done