2024-07-10 15:49:29,278 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 15:49:29,623 Running on GPU
2024-07-10 15:49:33,478 Found 6 citations for tools or databases
2024-07-10 15:49:33,478 Query 1/1: HERC6_RSLBA (length 1264)
2024-07-10 15:49:33,933 Sleeping for 10s. Reason: PENDING
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2024-07-10 15:54:45,131 Sleeping for 5s. Reason: RUNNING
2024-07-10 15:54:58,721 Setting max_seq=508, max_extra_seq=2048
2024-07-10 15:57:31,615 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.8 pTM=0.727 ipTM=0.233
2024-07-10 15:58:09,191 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.4 pTM=0.73 ipTM=0.244 tol=2.91
2024-07-10 15:58:46,846 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.2 pTM=0.729 ipTM=0.243 tol=1.99
2024-07-10 15:59:24,555 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.5 pTM=0.729 ipTM=0.248 tol=1.43
2024-07-10 16:00:02,282 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.4 pTM=0.725 ipTM=0.252 tol=1.59
2024-07-10 16:00:40,008 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.8 pTM=0.737 ipTM=0.293 tol=3.23
2024-07-10 16:01:17,752 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.1 pTM=0.736 ipTM=0.284 tol=1.55
2024-07-10 16:01:55,525 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=78.8 pTM=0.731 ipTM=0.282 tol=0.573
2024-07-10 16:02:33,312 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.2 pTM=0.74 ipTM=0.303 tol=0.733
2024-07-10 16:03:11,104 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=78.9 pTM=0.733 ipTM=0.288 tol=0.399
2024-07-10 16:03:11,105 alphafold2_multimer_v3_model_1_seed_000 took 487.5s (9 recycles)
2024-07-10 16:03:49,940 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.2 pTM=0.726 ipTM=0.255
2024-07-10 16:04:27,784 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.6 pTM=0.736 ipTM=0.289 tol=5.37
2024-07-10 16:05:05,660 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.6 pTM=0.744 ipTM=0.303 tol=3.69
2024-07-10 16:05:43,542 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.8 pTM=0.742 ipTM=0.29 tol=1
2024-07-10 16:06:21,433 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.7 pTM=0.738 ipTM=0.28 tol=0.83
2024-07-10 16:06:59,311 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.5 pTM=0.734 ipTM=0.271 tol=1.09
2024-07-10 16:07:37,196 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=79.6 pTM=0.737 ipTM=0.27 tol=0.918
2024-07-10 16:08:15,072 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=79.5 pTM=0.733 ipTM=0.261 tol=0.777
2024-07-10 16:08:52,963 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=79.8 pTM=0.736 ipTM=0.27 tol=0.692
2024-07-10 16:09:30,811 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=79.6 pTM=0.735 ipTM=0.271 tol=0.538
2024-07-10 16:10:08,653 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=79.8 pTM=0.735 ipTM=0.267 tol=0.781
2024-07-10 16:10:46,492 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=79.6 pTM=0.735 ipTM=0.266 tol=0.823
2024-07-10 16:11:24,314 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=79.6 pTM=0.735 ipTM=0.271 tol=0.63
2024-07-10 16:12:02,127 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=79.3 pTM=0.732 ipTM=0.269 tol=0.453
2024-07-10 16:12:02,128 alphafold2_multimer_v3_model_2_seed_000 took 530.1s (13 recycles)
2024-07-10 16:12:40,948 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.7 pTM=0.722 ipTM=0.268
2024-07-10 16:13:18,767 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80 pTM=0.734 ipTM=0.396 tol=13.9
2024-07-10 16:13:56,607 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.4 pTM=0.718 ipTM=0.239 tol=3.86
2024-07-10 16:14:34,495 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.4 pTM=0.731 ipTM=0.24 tol=14.1
2024-07-10 16:15:12,341 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.5 pTM=0.726 ipTM=0.228 tol=3.35
2024-07-10 16:15:50,184 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.6 pTM=0.732 ipTM=0.259 tol=1.66
2024-07-10 16:16:28,033 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.9 pTM=0.735 ipTM=0.259 tol=1.43
2024-07-10 16:17:05,901 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.9 pTM=0.734 ipTM=0.261 tol=1.26
2024-07-10 16:17:43,746 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.8 pTM=0.735 ipTM=0.265 tol=1.27
2024-07-10 16:18:21,595 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.9 pTM=0.736 ipTM=0.263 tol=1.27
2024-07-10 16:18:59,454 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.1 pTM=0.736 ipTM=0.263 tol=0.99
2024-07-10 16:19:37,312 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.1 pTM=0.738 ipTM=0.27 tol=0.916
2024-07-10 16:20:15,139 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79.6 pTM=0.733 ipTM=0.267 tol=0.956
2024-07-10 16:20:52,993 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=79.8 pTM=0.735 ipTM=0.268 tol=1.02
2024-07-10 16:21:30,856 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.7 pTM=0.734 ipTM=0.268 tol=1.08
2024-07-10 16:22:08,738 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=79.7 pTM=0.733 ipTM=0.271 tol=0.699
2024-07-10 16:22:46,621 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=79.8 pTM=0.738 ipTM=0.274 tol=1.17
2024-07-10 16:23:24,493 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=79.7 pTM=0.732 ipTM=0.267 tol=0.896
2024-07-10 16:24:02,361 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=79.4 pTM=0.733 ipTM=0.269 tol=0.715
2024-07-10 16:24:40,230 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=79.8 pTM=0.735 ipTM=0.274 tol=0.718
2024-07-10 16:25:18,100 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=79.4 pTM=0.734 ipTM=0.274 tol=0.798
2024-07-10 16:25:55,965 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=79.7 pTM=0.732 ipTM=0.27 tol=0.809
2024-07-10 16:26:33,849 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=79.7 pTM=0.736 ipTM=0.273 tol=0.856
2024-07-10 16:27:11,740 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=79.6 pTM=0.734 ipTM=0.275 tol=0.8
2024-07-10 16:27:49,620 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=79.7 pTM=0.738 ipTM=0.279 tol=0.695
2024-07-10 16:28:27,505 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=79.6 pTM=0.736 ipTM=0.277 tol=0.57
2024-07-10 16:29:05,392 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80 pTM=0.741 ipTM=0.277 tol=0.53
2024-07-10 16:29:43,296 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=79.7 pTM=0.735 ipTM=0.279 tol=0.402
2024-07-10 16:29:43,297 alphafold2_multimer_v3_model_3_seed_000 took 1060.2s (27 recycles)
2024-07-10 16:30:22,161 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.8 pTM=0.721 ipTM=0.228
2024-07-10 16:31:00,141 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.9 pTM=0.745 ipTM=0.265 tol=5.04
2024-07-10 16:31:38,074 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.4 pTM=0.747 ipTM=0.279 tol=4.61
2024-07-10 16:32:16,049 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.6 pTM=0.747 ipTM=0.27 tol=1.85
2024-07-10 16:32:54,008 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.7 pTM=0.748 ipTM=0.279 tol=1.29
2024-07-10 16:33:31,980 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.9 pTM=0.75 ipTM=0.281 tol=0.58
2024-07-10 16:34:09,911 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.8 pTM=0.749 ipTM=0.283 tol=0.78
2024-07-10 16:34:47,840 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.9 pTM=0.749 ipTM=0.278 tol=0.728
2024-07-10 16:35:25,791 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.8 pTM=0.748 ipTM=0.279 tol=0.502
2024-07-10 16:36:03,770 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79 pTM=0.75 ipTM=0.281 tol=0.554
2024-07-10 16:36:41,688 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.9 pTM=0.748 ipTM=0.281 tol=0.691
2024-07-10 16:37:19,615 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.8 pTM=0.749 ipTM=0.287 tol=0.806
2024-07-10 16:37:57,537 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.9 pTM=0.75 ipTM=0.288 tol=1.26
2024-07-10 16:38:35,439 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.6 pTM=0.745 ipTM=0.281 tol=0.932
2024-07-10 16:39:13,336 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.9 pTM=0.748 ipTM=0.281 tol=0.51
2024-07-10 16:39:51,237 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.6 pTM=0.747 ipTM=0.281 tol=0.708
2024-07-10 16:40:29,135 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.8 pTM=0.749 ipTM=0.287 tol=0.539
2024-07-10 16:41:07,014 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.7 pTM=0.747 ipTM=0.284 tol=0.567
2024-07-10 16:41:44,899 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=78.4 pTM=0.744 ipTM=0.281 tol=0.585
2024-07-10 16:42:22,802 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=78.7 pTM=0.749 ipTM=0.292 tol=0.797
2024-07-10 16:43:00,694 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=78.4 pTM=0.746 ipTM=0.286 tol=0.378
2024-07-10 16:43:00,695 alphafold2_multimer_v3_model_4_seed_000 took 796.4s (20 recycles)
2024-07-10 16:43:39,527 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.4 pTM=0.724 ipTM=0.237
2024-07-10 16:44:17,430 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.7 pTM=0.73 ipTM=0.221 tol=3.62
2024-07-10 16:44:55,361 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.8 pTM=0.732 ipTM=0.228 tol=3.07
2024-07-10 16:45:33,317 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.4 pTM=0.738 ipTM=0.26 tol=3.73
2024-07-10 16:46:11,262 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.7 pTM=0.744 ipTM=0.298 tol=5.73
2024-07-10 16:46:49,196 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.5 pTM=0.74 ipTM=0.252 tol=1.37
2024-07-10 16:47:27,132 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.4 pTM=0.732 ipTM=0.223 tol=1.18
2024-07-10 16:48:05,082 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.6 pTM=0.735 ipTM=0.225 tol=0.834
2024-07-10 16:48:43,013 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.5 pTM=0.732 ipTM=0.216 tol=0.732
2024-07-10 16:49:20,952 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.7 pTM=0.731 ipTM=0.207 tol=0.871
2024-07-10 16:49:58,874 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.4 pTM=0.728 ipTM=0.195 tol=1.55
2024-07-10 16:50:36,750 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.2 pTM=0.73 ipTM=0.213 tol=1.19
2024-07-10 16:51:14,605 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.2 pTM=0.735 ipTM=0.235 tol=1.47
2024-07-10 16:51:52,461 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.2 pTM=0.731 ipTM=0.226 tol=1.27
2024-07-10 16:52:30,302 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.4 pTM=0.733 ipTM=0.227 tol=0.708
2024-07-10 16:53:08,129 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.2 pTM=0.73 ipTM=0.218 tol=0.875
2024-07-10 16:53:45,974 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.4 pTM=0.734 ipTM=0.237 tol=1.22
2024-07-10 16:54:23,817 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=79.2 pTM=0.73 ipTM=0.216 tol=0.809
2024-07-10 16:55:01,661 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.3 pTM=0.728 ipTM=0.209 tol=0.458
2024-07-10 16:55:01,663 alphafold2_multimer_v3_model_5_seed_000 took 720.0s (18 recycles)
2024-07-10 16:55:02,634 reranking models by 'multimer' metric
2024-07-10 16:55:03,941 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 16:57:14,553 Relaxation took 131.9s
2024-07-10 16:57:14,553 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.4 pTM=0.746 ipTM=0.286
2024-07-10 16:58:51,042 Relaxation took 96.5s
2024-07-10 16:58:51,042 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.9 pTM=0.733 ipTM=0.288
2024-07-10 17:01:36,376 Relaxation took 165.3s
2024-07-10 17:01:36,376 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.7 pTM=0.735 ipTM=0.279
2024-07-10 17:02:41,519 Relaxation took 65.1s
2024-07-10 17:02:41,519 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.3 pTM=0.732 ipTM=0.269
2024-07-10 17:05:14,413 Relaxation took 152.9s
2024-07-10 17:05:14,413 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.3 pTM=0.728 ipTM=0.209
2024-07-10 17:05:17,103 Done