2024-07-10 17:42:24,026 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 17:42:24,341 Running on GPU
2024-07-10 17:42:28,256 Found 6 citations for tools or databases
2024-07-10 17:42:28,256 Query 1/1: HVC05_PPP6 (length 422)
2024-07-10 17:42:28,688 Sleeping for 6s. Reason: PENDING
2024-07-10 17:42:35,102 Sleeping for 5s. Reason: RUNNING
2024-07-10 17:42:40,549 Sleeping for 7s. Reason: RUNNING
2024-07-10 17:42:47,963 Sleeping for 8s. Reason: RUNNING
2024-07-10 17:42:56,405 Sleeping for 8s. Reason: RUNNING
2024-07-10 17:43:04,828 Sleeping for 6s. Reason: RUNNING
2024-07-10 17:43:11,269 Sleeping for 7s. Reason: RUNNING
2024-07-10 17:43:18,892 Sleeping for 10s. Reason: RUNNING
2024-07-10 17:43:29,546 Sleeping for 8s. Reason: RUNNING
2024-07-10 17:43:38,201 Sleeping for 5s. Reason: RUNNING
2024-07-10 17:43:43,612 Sleeping for 9s. Reason: RUNNING
2024-07-10 17:43:53,041 Sleeping for 8s. Reason: RUNNING
2024-07-10 17:44:16,940 Sleeping for 6s. Reason: PENDING
2024-07-10 17:44:23,361 Sleeping for 8s. Reason: RUNNING
2024-07-10 17:44:31,812 Sleeping for 10s. Reason: RUNNING
2024-07-10 17:44:42,236 Sleeping for 6s. Reason: RUNNING
2024-07-10 17:44:48,659 Sleeping for 7s. Reason: RUNNING
2024-07-10 17:44:56,080 Sleeping for 7s. Reason: RUNNING
2024-07-10 17:45:03,502 Sleeping for 10s. Reason: RUNNING
2024-07-10 17:45:17,048 Setting max_seq=508, max_extra_seq=2048
2024-07-10 17:47:51,636 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=81 pTM=0.721 ipTM=0.214
2024-07-10 17:47:56,192 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.2 pTM=0.708 ipTM=0.171 tol=9.99
2024-07-10 17:48:00,750 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.9 pTM=0.708 ipTM=0.178 tol=5.79
2024-07-10 17:48:05,305 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.5 pTM=0.715 ipTM=0.2 tol=4.45
2024-07-10 17:48:09,854 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82.3 pTM=0.704 ipTM=0.154 tol=6.2
2024-07-10 17:48:14,401 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.5 pTM=0.704 ipTM=0.156 tol=4.04
2024-07-10 17:48:18,946 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=82.9 pTM=0.706 ipTM=0.155 tol=6.51
2024-07-10 17:48:23,484 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.2 pTM=0.715 ipTM=0.19 tol=2.42
2024-07-10 17:48:28,025 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83.8 pTM=0.715 ipTM=0.188 tol=0.721
2024-07-10 17:48:32,559 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=84.4 pTM=0.715 ipTM=0.193 tol=0.584
2024-07-10 17:48:37,097 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=84.5 pTM=0.708 ipTM=0.166 tol=0.858
2024-07-10 17:48:41,630 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=84.6 pTM=0.706 ipTM=0.157 tol=1.78
2024-07-10 17:48:46,167 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=84.6 pTM=0.706 ipTM=0.16 tol=1.89
2024-07-10 17:48:50,700 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=84.5 pTM=0.707 ipTM=0.16 tol=1.94
2024-07-10 17:48:55,236 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=84.9 pTM=0.709 ipTM=0.165 tol=0.378
2024-07-10 17:48:55,236 alphafold2_multimer_v3_model_1_seed_000 took 212.8s (14 recycles)
2024-07-10 17:48:59,915 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=82.9 pTM=0.706 ipTM=0.164
2024-07-10 17:49:04,469 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85.3 pTM=0.717 ipTM=0.215 tol=8.65
2024-07-10 17:49:09,023 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=86.4 pTM=0.717 ipTM=0.219 tol=1.26
2024-07-10 17:49:13,578 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.4 pTM=0.706 ipTM=0.159 tol=5.4
2024-07-10 17:49:18,124 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=86.3 pTM=0.708 ipTM=0.169 tol=3.92
2024-07-10 17:49:22,673 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=86.2 pTM=0.707 ipTM=0.165 tol=0.309
2024-07-10 17:49:22,673 alphafold2_multimer_v3_model_2_seed_000 took 27.3s (5 recycles)
2024-07-10 17:49:27,345 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.5 pTM=0.725 ipTM=0.273
2024-07-10 17:49:31,905 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=82.6 pTM=0.709 ipTM=0.17 tol=8.82
2024-07-10 17:49:36,460 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=83.1 pTM=0.705 ipTM=0.164 tol=4.19
2024-07-10 17:49:41,015 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=83.5 pTM=0.731 ipTM=0.266 tol=9.32
2024-07-10 17:49:45,561 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.9 pTM=0.708 ipTM=0.166 tol=7.99
2024-07-10 17:49:50,110 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=82.6 pTM=0.707 ipTM=0.172 tol=2.94
2024-07-10 17:49:54,661 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=83.4 pTM=0.727 ipTM=0.263 tol=8.95
2024-07-10 17:49:59,205 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=84.1 pTM=0.708 ipTM=0.167 tol=6.43
2024-07-10 17:50:03,751 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.4 pTM=0.707 ipTM=0.17 tol=1.69
2024-07-10 17:50:08,295 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=84.4 pTM=0.724 ipTM=0.26 tol=6.55
2024-07-10 17:50:12,847 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=85.3 pTM=0.712 ipTM=0.189 tol=1.74
2024-07-10 17:50:17,394 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=84.8 pTM=0.708 ipTM=0.172 tol=3.42
2024-07-10 17:50:21,939 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=84.5 pTM=0.711 ipTM=0.176 tol=1.39
2024-07-10 17:50:26,480 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=84.5 pTM=0.707 ipTM=0.169 tol=0.371
2024-07-10 17:50:26,481 alphafold2_multimer_v3_model_3_seed_000 took 63.7s (13 recycles)
2024-07-10 17:50:31,156 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.1 pTM=0.724 ipTM=0.237
2024-07-10 17:50:35,727 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=82.9 pTM=0.717 ipTM=0.168 tol=7.58
2024-07-10 17:50:40,288 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.8 pTM=0.712 ipTM=0.169 tol=4.71
2024-07-10 17:50:44,854 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.8 pTM=0.712 ipTM=0.161 tol=4.18
2024-07-10 17:50:49,414 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.9 pTM=0.713 ipTM=0.167 tol=3.21
2024-07-10 17:50:53,971 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83 pTM=0.714 ipTM=0.167 tol=5.58
2024-07-10 17:50:58,535 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.2 pTM=0.713 ipTM=0.169 tol=4.66
2024-07-10 17:51:03,087 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=83.1 pTM=0.712 ipTM=0.167 tol=4.55
2024-07-10 17:51:07,646 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.3 pTM=0.712 ipTM=0.167 tol=4.19
2024-07-10 17:51:12,202 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=83.4 pTM=0.712 ipTM=0.17 tol=2.86
2024-07-10 17:51:16,760 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.4 pTM=0.713 ipTM=0.168 tol=3.06
2024-07-10 17:51:21,320 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.6 pTM=0.713 ipTM=0.171 tol=2.37
2024-07-10 17:51:25,873 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.6 pTM=0.712 ipTM=0.165 tol=2.44
2024-07-10 17:51:30,423 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=84.6 pTM=0.712 ipTM=0.168 tol=2.47
2024-07-10 17:51:34,978 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=84.7 pTM=0.712 ipTM=0.163 tol=1.48
2024-07-10 17:51:39,531 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=85.2 pTM=0.712 ipTM=0.169 tol=1.06
2024-07-10 17:51:44,088 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=84.9 pTM=0.713 ipTM=0.165 tol=1.54
2024-07-10 17:51:48,669 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=85.2 pTM=0.713 ipTM=0.172 tol=1.53
2024-07-10 17:51:53,234 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=84.8 pTM=0.713 ipTM=0.165 tol=1.46
2024-07-10 17:51:57,788 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=85.1 pTM=0.712 ipTM=0.171 tol=1.13
2024-07-10 17:52:02,347 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=84.8 pTM=0.714 ipTM=0.167 tol=1.12
2024-07-10 17:52:06,906 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=85.1 pTM=0.712 ipTM=0.171 tol=1.58
2024-07-10 17:52:11,461 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=84.8 pTM=0.713 ipTM=0.166 tol=1.36
2024-07-10 17:52:16,031 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=85 pTM=0.712 ipTM=0.166 tol=1.22
2024-07-10 17:52:20,586 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=84.8 pTM=0.711 ipTM=0.164 tol=0.861
2024-07-10 17:52:25,138 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=84.9 pTM=0.712 ipTM=0.168 tol=0.978
2024-07-10 17:52:29,695 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=85.1 pTM=0.712 ipTM=0.163 tol=1.09
2024-07-10 17:52:34,247 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=84.8 pTM=0.713 ipTM=0.169 tol=0.521
2024-07-10 17:52:38,798 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=84.9 pTM=0.712 ipTM=0.167 tol=1.17
2024-07-10 17:52:43,350 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=84.9 pTM=0.713 ipTM=0.174 tol=0.923
2024-07-10 17:52:47,905 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=84.8 pTM=0.712 ipTM=0.165 tol=0.538
2024-07-10 17:52:47,906 alphafold2_multimer_v3_model_4_seed_000 took 141.3s (30 recycles)
2024-07-10 17:52:52,582 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.4 pTM=0.714 ipTM=0.242
2024-07-10 17:52:57,141 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=83.6 pTM=0.726 ipTM=0.214 tol=9.2
2024-07-10 17:53:01,714 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=84.2 pTM=0.715 ipTM=0.182 tol=4.57
2024-07-10 17:53:06,276 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.3 pTM=0.719 ipTM=0.196 tol=1.35
2024-07-10 17:53:10,839 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.6 pTM=0.709 ipTM=0.17 tol=0.849
2024-07-10 17:53:15,408 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.4 pTM=0.755 ipTM=0.327 tol=9.55
2024-07-10 17:53:19,985 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=86.1 pTM=0.708 ipTM=0.162 tol=4.53
2024-07-10 17:53:24,554 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.9 pTM=0.707 ipTM=0.156 tol=2.11
2024-07-10 17:53:29,129 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=85.3 pTM=0.708 ipTM=0.158 tol=4.66
2024-07-10 17:53:33,708 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=85.1 pTM=0.809 ipTM=0.531 tol=8.95
2024-07-10 17:53:38,278 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=86 pTM=0.707 ipTM=0.154 tol=6.35
2024-07-10 17:53:42,844 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=85.8 pTM=0.708 ipTM=0.159 tol=0.839
2024-07-10 17:53:47,408 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=85.4 pTM=0.708 ipTM=0.162 tol=5.68
2024-07-10 17:53:51,967 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=85.6 pTM=0.714 ipTM=0.181 tol=2.84
2024-07-10 17:53:56,533 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=85.7 pTM=0.706 ipTM=0.167 tol=4.28
2024-07-10 17:54:01,097 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=85.2 pTM=0.716 ipTM=0.229 tol=6.74
2024-07-10 17:54:05,666 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=86.1 pTM=0.708 ipTM=0.161 tol=4.81
2024-07-10 17:54:10,233 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=85.8 pTM=0.708 ipTM=0.159 tol=0.697
2024-07-10 17:54:14,800 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=85.6 pTM=0.708 ipTM=0.161 tol=3.37
2024-07-10 17:54:19,361 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=85.6 pTM=0.712 ipTM=0.174 tol=4.37
2024-07-10 17:54:23,927 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=85.7 pTM=0.712 ipTM=0.174 tol=0.353
2024-07-10 17:54:23,927 alphafold2_multimer_v3_model_5_seed_000 took 95.9s (20 recycles)
2024-07-10 17:54:24,055 reranking models by 'multimer' metric
2024-07-10 17:54:24,728 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 17:54:37,032 Relaxation took 13.0s
2024-07-10 17:54:37,032 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.7 pTM=0.712 ipTM=0.174
2024-07-10 17:54:59,316 Relaxation took 22.3s
2024-07-10 17:54:59,316 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=84.5 pTM=0.707 ipTM=0.169
2024-07-10 17:55:08,914 Relaxation took 9.6s
2024-07-10 17:55:08,914 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.8 pTM=0.712 ipTM=0.165
2024-07-10 17:55:29,565 Relaxation took 20.7s
2024-07-10 17:55:29,565 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=84.9 pTM=0.709 ipTM=0.165
2024-07-10 17:55:38,223 Relaxation took 8.7s
2024-07-10 17:55:38,223 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=86.2 pTM=0.707 ipTM=0.165
2024-07-10 17:55:39,235 Done