2024-07-10 19:12:41,915 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-10 19:12:42,250 Running on GPU
2024-07-10 19:12:45,748 Found 6 citations for tools or databases
2024-07-10 19:12:45,748 Query 1/1: IL32_MAL (length 387)
2024-07-10 19:12:47,019 Sleeping for 7s. Reason: PENDING
2024-07-10 19:12:54,438 Sleeping for 6s. Reason: RUNNING
2024-07-10 19:13:00,853 Sleeping for 10s. Reason: RUNNING
2024-07-10 19:13:11,603 Sleeping for 9s. Reason: RUNNING
2024-07-10 19:13:22,791 Sleeping for 10s. Reason: PENDING
2024-07-10 19:13:34,359 Sleeping for 7s. Reason: RUNNING
2024-07-10 19:13:41,787 Sleeping for 5s. Reason: RUNNING
2024-07-10 19:13:48,046 Setting max_seq=508, max_extra_seq=1708
2024-07-10 19:16:31,406 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=57.1 pTM=0.371 ipTM=0.127
2024-07-10 19:16:35,087 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=64.9 pTM=0.439 ipTM=0.232 tol=8.27
2024-07-10 19:16:38,765 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=64.9 pTM=0.46 ipTM=0.321 tol=0.95
2024-07-10 19:16:42,442 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=64.2 pTM=0.463 ipTM=0.326 tol=0.696
2024-07-10 19:16:46,120 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=64.1 pTM=0.468 ipTM=0.343 tol=0.629
2024-07-10 19:16:49,799 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=65.2 pTM=0.473 ipTM=0.358 tol=0.668
2024-07-10 19:16:53,478 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=64.6 pTM=0.473 ipTM=0.359 tol=0.48
2024-07-10 19:16:53,478 alphafold2_multimer_v3_model_1_seed_000 took 180.3s (6 recycles)
2024-07-10 19:16:57,276 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=48.3 pTM=0.336 ipTM=0.126
2024-07-10 19:17:00,952 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=60.5 pTM=0.406 ipTM=0.209 tol=8.91
2024-07-10 19:17:04,627 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=58.4 pTM=0.385 ipTM=0.233 tol=1.55
2024-07-10 19:17:08,300 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=58.7 pTM=0.39 ipTM=0.224 tol=1.1
2024-07-10 19:17:11,977 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=58.4 pTM=0.396 ipTM=0.229 tol=0.767
2024-07-10 19:17:15,652 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=59.2 pTM=0.392 ipTM=0.224 tol=0.646
2024-07-10 19:17:19,328 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=58.9 pTM=0.394 ipTM=0.246 tol=0.637
2024-07-10 19:17:23,005 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=58.8 pTM=0.391 ipTM=0.228 tol=0.701
2024-07-10 19:17:26,682 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=57.2 pTM=0.377 ipTM=0.227 tol=0.626
2024-07-10 19:17:30,360 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=56.2 pTM=0.373 ipTM=0.213 tol=0.464
2024-07-10 19:17:30,361 alphafold2_multimer_v3_model_2_seed_000 took 36.8s (9 recycles)
2024-07-10 19:17:34,161 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=46 pTM=0.308 ipTM=0.146
2024-07-10 19:17:37,838 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=59.2 pTM=0.442 ipTM=0.263 tol=10.4
2024-07-10 19:17:41,516 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.7 pTM=0.423 ipTM=0.277 tol=0.841
2024-07-10 19:17:45,194 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60 pTM=0.427 ipTM=0.3 tol=0.622
2024-07-10 19:17:48,872 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=59.2 pTM=0.423 ipTM=0.287 tol=0.464
2024-07-10 19:17:48,872 alphafold2_multimer_v3_model_3_seed_000 took 18.4s (4 recycles)
2024-07-10 19:17:52,670 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=63.9 pTM=0.436 ipTM=0.283
2024-07-10 19:17:56,356 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=65.1 pTM=0.433 ipTM=0.24 tol=3.06
2024-07-10 19:18:00,039 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=63.3 pTM=0.435 ipTM=0.244 tol=1.11
2024-07-10 19:18:03,723 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=63.2 pTM=0.437 ipTM=0.242 tol=0.9
2024-07-10 19:18:07,409 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=62.1 pTM=0.44 ipTM=0.247 tol=1.21
2024-07-10 19:18:11,096 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=63.3 pTM=0.446 ipTM=0.249 tol=3.08
2024-07-10 19:18:14,783 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=63.2 pTM=0.442 ipTM=0.252 tol=1.29
2024-07-10 19:18:18,468 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=62.6 pTM=0.429 ipTM=0.221 tol=1.4
2024-07-10 19:18:22,156 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=62.7 pTM=0.425 ipTM=0.218 tol=0.666
2024-07-10 19:18:25,841 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=62.8 pTM=0.429 ipTM=0.218 tol=0.826
2024-07-10 19:18:29,529 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=62.3 pTM=0.422 ipTM=0.207 tol=0.973
2024-07-10 19:18:33,217 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=62.8 pTM=0.427 ipTM=0.217 tol=0.699
2024-07-10 19:18:36,905 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=63.1 pTM=0.428 ipTM=0.214 tol=0.818
2024-07-10 19:18:40,594 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=62.3 pTM=0.431 ipTM=0.217 tol=1.81
2024-07-10 19:18:44,283 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=62.3 pTM=0.424 ipTM=0.207 tol=1.82
2024-07-10 19:18:47,972 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=62.6 pTM=0.429 ipTM=0.218 tol=3.29
2024-07-10 19:18:51,661 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=62.7 pTM=0.423 ipTM=0.21 tol=0.794
2024-07-10 19:18:55,349 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=63 pTM=0.42 ipTM=0.208 tol=1.09
2024-07-10 19:18:59,040 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=62.7 pTM=0.42 ipTM=0.203 tol=1.23
2024-07-10 19:19:02,728 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=63.3 pTM=0.423 ipTM=0.212 tol=0.943
2024-07-10 19:19:06,417 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=61.9 pTM=0.419 ipTM=0.203 tol=2.08
2024-07-10 19:19:10,107 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=62.9 pTM=0.428 ipTM=0.216 tol=1.85
2024-07-10 19:19:13,794 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=62.1 pTM=0.423 ipTM=0.211 tol=1.73
2024-07-10 19:19:17,484 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=62.9 pTM=0.428 ipTM=0.213 tol=2.25
2024-07-10 19:19:21,173 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=62.5 pTM=0.424 ipTM=0.208 tol=2.63
2024-07-10 19:19:24,862 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=62.6 pTM=0.421 ipTM=0.212 tol=0.646
2024-07-10 19:19:28,551 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=63 pTM=0.424 ipTM=0.208 tol=1.04
2024-07-10 19:19:32,242 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=63.4 pTM=0.43 ipTM=0.219 tol=0.941
2024-07-10 19:19:35,931 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=62.5 pTM=0.425 ipTM=0.213 tol=1.67
2024-07-10 19:19:39,620 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=62.8 pTM=0.416 ipTM=0.204 tol=1.29
2024-07-10 19:19:43,310 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=62.8 pTM=0.424 ipTM=0.21 tol=0.908
2024-07-10 19:19:43,310 alphafold2_multimer_v3_model_4_seed_000 took 114.3s (30 recycles)
2024-07-10 19:19:47,129 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=47.7 pTM=0.352 ipTM=0.164
2024-07-10 19:19:50,832 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=50.9 pTM=0.387 ipTM=0.157 tol=4.66
2024-07-10 19:19:54,532 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=48.8 pTM=0.388 ipTM=0.161 tol=12.7
2024-07-10 19:19:58,229 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=50.6 pTM=0.389 ipTM=0.162 tol=4.95
2024-07-10 19:20:01,928 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=50 pTM=0.389 ipTM=0.162 tol=3.82
2024-07-10 19:20:05,626 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=50.2 pTM=0.393 ipTM=0.172 tol=2.77
2024-07-10 19:20:09,321 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=50.3 pTM=0.4 ipTM=0.173 tol=2.52
2024-07-10 19:20:13,011 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=48.1 pTM=0.394 ipTM=0.174 tol=2.8
2024-07-10 19:20:16,698 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=53.8 pTM=0.394 ipTM=0.185 tol=16.1
2024-07-10 19:20:20,384 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=58 pTM=0.416 ipTM=0.201 tol=3.65
2024-07-10 19:20:24,069 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=57.9 pTM=0.421 ipTM=0.222 tol=1.05
2024-07-10 19:20:27,754 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=57.1 pTM=0.42 ipTM=0.228 tol=0.893
2024-07-10 19:20:31,438 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=57.8 pTM=0.429 ipTM=0.251 tol=0.58
2024-07-10 19:20:35,122 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=56.1 pTM=0.417 ipTM=0.24 tol=0.741
2024-07-10 19:20:38,806 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57 pTM=0.426 ipTM=0.246 tol=0.311
2024-07-10 19:20:38,807 alphafold2_multimer_v3_model_5_seed_000 took 55.4s (14 recycles)
2024-07-10 19:20:38,916 reranking models by 'multimer' metric
2024-07-10 19:20:41,982 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-10 19:21:05,084 Relaxation took 26.2s
2024-07-10 19:21:05,085 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=64.6 pTM=0.473 ipTM=0.359
2024-07-10 19:21:19,122 Relaxation took 14.0s
2024-07-10 19:21:19,123 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=59.2 pTM=0.423 ipTM=0.287
2024-07-10 19:21:38,597 Relaxation took 19.5s
2024-07-10 19:21:38,597 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=57 pTM=0.426 ipTM=0.246
2024-07-10 19:21:57,887 Relaxation took 19.3s
2024-07-10 19:21:57,887 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=62.8 pTM=0.424 ipTM=0.21
2024-07-10 19:22:16,193 Relaxation took 18.3s
2024-07-10 19:22:16,194 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=56.2 pTM=0.373 ipTM=0.213
2024-07-10 19:22:17,105 Done