2024-07-11 00:45:55,278 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 00:45:55,593 Running on GPU
2024-07-11 00:45:59,110 Found 6 citations for tools or databases
2024-07-11 00:45:59,110 Query 1/1: KLDC9_ODPA (length 739)
2024-07-11 00:45:59,548 Sleeping for 7s. Reason: PENDING
2024-07-11 00:46:06,961 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:46:13,399 Sleeping for 10s. Reason: RUNNING
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2024-07-11 00:46:30,009 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:46:36,421 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:46:42,845 Sleeping for 7s. Reason: RUNNING
2024-07-11 00:46:50,284 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:46:56,716 Sleeping for 7s. Reason: RUNNING
2024-07-11 00:47:04,151 Sleeping for 9s. Reason: RUNNING
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2024-07-11 00:47:21,487 Sleeping for 10s. Reason: RUNNING
2024-07-11 00:47:31,922 Sleeping for 9s. Reason: RUNNING
2024-07-11 00:47:41,350 Sleeping for 7s. Reason: RUNNING
2024-07-11 00:47:48,767 Sleeping for 9s. Reason: RUNNING
2024-07-11 00:48:01,442 Sleeping for 5s. Reason: PENDING
2024-07-11 00:48:06,851 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:48:13,310 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:48:19,725 Sleeping for 10s. Reason: RUNNING
2024-07-11 00:48:30,148 Sleeping for 7s. Reason: RUNNING
2024-07-11 00:48:37,565 Sleeping for 7s. Reason: RUNNING
2024-07-11 00:48:45,868 Sleeping for 10s. Reason: RUNNING
2024-07-11 00:48:56,278 Sleeping for 9s. Reason: RUNNING
2024-07-11 00:49:05,696 Sleeping for 6s. Reason: RUNNING
2024-07-11 00:49:12,128 Sleeping for 9s. Reason: RUNNING
2024-07-11 00:49:24,429 Setting max_seq=508, max_extra_seq=2036
2024-07-11 00:52:10,429 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=87.2 pTM=0.567 ipTM=0.221
2024-07-11 00:52:21,429 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=88.3 pTM=0.563 ipTM=0.212 tol=3.22
2024-07-11 00:52:32,413 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=88.5 pTM=0.549 ipTM=0.182 tol=1.74
2024-07-11 00:52:43,386 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=88.3 pTM=0.541 ipTM=0.176 tol=1.6
2024-07-11 00:52:54,364 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=88.4 pTM=0.544 ipTM=0.179 tol=1.66
2024-07-11 00:53:05,359 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=88.1 pTM=0.538 ipTM=0.168 tol=1.59
2024-07-11 00:53:16,381 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=88.4 pTM=0.54 ipTM=0.173 tol=0.701
2024-07-11 00:53:27,389 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=88.2 pTM=0.539 ipTM=0.173 tol=0.576
2024-07-11 00:53:38,441 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=88.4 pTM=0.542 ipTM=0.18 tol=1
2024-07-11 00:53:49,486 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=88.4 pTM=0.544 ipTM=0.183 tol=0.539
2024-07-11 00:54:00,528 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=88.4 pTM=0.547 ipTM=0.187 tol=0.464
2024-07-11 00:54:00,529 alphafold2_multimer_v3_model_1_seed_000 took 271.2s (10 recycles)
2024-07-11 00:54:11,995 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=87.6 pTM=0.581 ipTM=0.247
2024-07-11 00:54:23,084 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=88.3 pTM=0.574 ipTM=0.235 tol=2.3
2024-07-11 00:54:34,171 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=88.7 pTM=0.571 ipTM=0.222 tol=1.11
2024-07-11 00:54:45,245 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=88.4 pTM=0.562 ipTM=0.208 tol=1.63
2024-07-11 00:54:56,319 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=88.4 pTM=0.556 ipTM=0.195 tol=1.08
2024-07-11 00:55:07,377 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=88.4 pTM=0.556 ipTM=0.195 tol=1.2
2024-07-11 00:55:18,437 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=88.6 pTM=0.554 ipTM=0.19 tol=1.17
2024-07-11 00:55:29,498 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=88.5 pTM=0.557 ipTM=0.195 tol=0.81
2024-07-11 00:55:40,550 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=88.6 pTM=0.555 ipTM=0.193 tol=0.858
2024-07-11 00:55:51,603 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=88.6 pTM=0.561 ipTM=0.207 tol=0.525
2024-07-11 00:56:02,661 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=88.6 pTM=0.561 ipTM=0.209 tol=0.73
2024-07-11 00:56:13,729 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=88.6 pTM=0.558 ipTM=0.202 tol=0.467
2024-07-11 00:56:13,730 alphafold2_multimer_v3_model_2_seed_000 took 132.9s (11 recycles)
2024-07-11 00:56:25,224 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.8 pTM=0.548 ipTM=0.163
2024-07-11 00:56:36,319 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=88.3 pTM=0.548 ipTM=0.171 tol=3.23
2024-07-11 00:56:47,399 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=88.2 pTM=0.539 ipTM=0.165 tol=1.25
2024-07-11 00:56:58,455 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=87.8 pTM=0.535 ipTM=0.163 tol=1.55
2024-07-11 00:57:09,523 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.9 pTM=0.54 ipTM=0.168 tol=1.04
2024-07-11 00:57:20,608 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=87.9 pTM=0.54 ipTM=0.173 tol=0.797
2024-07-11 00:57:31,665 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=87.9 pTM=0.541 ipTM=0.175 tol=0.606
2024-07-11 00:57:42,728 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=87.9 pTM=0.538 ipTM=0.172 tol=0.445
2024-07-11 00:57:42,729 alphafold2_multimer_v3_model_3_seed_000 took 88.7s (7 recycles)
2024-07-11 00:57:54,223 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=87.7 pTM=0.571 ipTM=0.217
2024-07-11 00:58:05,361 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=88.7 pTM=0.557 ipTM=0.187 tol=3.29
2024-07-11 00:58:16,498 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=88.5 pTM=0.547 ipTM=0.165 tol=1.15
2024-07-11 00:58:27,617 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=88.2 pTM=0.538 ipTM=0.146 tol=1.55
2024-07-11 00:58:38,747 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=88.2 pTM=0.539 ipTM=0.149 tol=0.551
2024-07-11 00:58:49,874 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=88.2 pTM=0.539 ipTM=0.149 tol=0.655
2024-07-11 00:59:01,002 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=88.2 pTM=0.536 ipTM=0.144 tol=0.744
2024-07-11 00:59:12,125 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=88.1 pTM=0.539 ipTM=0.15 tol=0.907
2024-07-11 00:59:23,244 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=88.4 pTM=0.541 ipTM=0.154 tol=0.561
2024-07-11 00:59:34,361 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=88.4 pTM=0.542 ipTM=0.154 tol=0.392
2024-07-11 00:59:34,362 alphafold2_multimer_v3_model_4_seed_000 took 111.3s (9 recycles)
2024-07-11 00:59:45,871 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=87.2 pTM=0.554 ipTM=0.19
2024-07-11 00:59:57,017 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=88 pTM=0.543 ipTM=0.17 tol=2.25
2024-07-11 01:00:08,153 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=88.1 pTM=0.542 ipTM=0.165 tol=1.57
2024-07-11 01:00:19,276 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=88 pTM=0.54 ipTM=0.165 tol=0.791
2024-07-11 01:00:30,406 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=88.1 pTM=0.542 ipTM=0.166 tol=0.81
2024-07-11 01:00:41,519 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=88 pTM=0.542 ipTM=0.167 tol=1.13
2024-07-11 01:00:52,641 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=88 pTM=0.541 ipTM=0.168 tol=0.908
2024-07-11 01:01:03,746 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=87.9 pTM=0.542 ipTM=0.174 tol=0.817
2024-07-11 01:01:14,874 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=88.1 pTM=0.542 ipTM=0.173 tol=0.821
2024-07-11 01:01:25,993 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=88 pTM=0.546 ipTM=0.181 tol=0.681
2024-07-11 01:01:37,118 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=88.1 pTM=0.552 ipTM=0.188 tol=0.618
2024-07-11 01:01:48,237 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=87.9 pTM=0.551 ipTM=0.188 tol=0.891
2024-07-11 01:01:59,350 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=87.8 pTM=0.552 ipTM=0.185 tol=1.22
2024-07-11 01:02:10,470 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=87.9 pTM=0.547 ipTM=0.179 tol=0.81
2024-07-11 01:02:21,582 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=87.9 pTM=0.548 ipTM=0.181 tol=0.391
2024-07-11 01:02:21,582 alphafold2_multimer_v3_model_5_seed_000 took 166.9s (14 recycles)
2024-07-11 01:02:21,926 reranking models by 'multimer' metric
2024-07-11 01:02:25,116 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 01:03:09,107 Relaxation took 47.2s
2024-07-11 01:03:09,107 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=88.6 pTM=0.558 ipTM=0.202
2024-07-11 01:03:29,198 Relaxation took 20.1s
2024-07-11 01:03:29,199 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=88.4 pTM=0.547 ipTM=0.187
2024-07-11 01:03:52,744 Relaxation took 23.5s
2024-07-11 01:03:52,744 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=87.9 pTM=0.548 ipTM=0.181
2024-07-11 01:05:03,415 Relaxation took 70.7s
2024-07-11 01:05:03,415 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=87.9 pTM=0.538 ipTM=0.172
2024-07-11 01:05:53,939 Relaxation took 50.5s
2024-07-11 01:05:53,939 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=88.4 pTM=0.542 ipTM=0.154
2024-07-11 01:05:55,259 Done